Wall clock time and date at job start Tue Mar 31 2020 20:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 C 1.54343 * 110.82146 * 287.96770 * 19 18 17 21 21 C 1.51369 * 105.17257 * 215.42509 * 20 19 18 22 22 C 1.38489 * 130.39032 * 197.19029 * 21 20 19 23 23 C 1.38109 * 120.21730 * 180.02562 * 22 21 20 24 24 C 1.38263 * 119.92678 * 0.02562 * 23 22 21 25 25 C 1.38094 * 119.93805 * 0.02562 * 24 23 22 26 26 C 1.38222 * 109.75646 * 17.19288 * 21 20 19 27 27 C 1.51373 * 109.75702 * 359.97438 * 26 21 20 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 36 36 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 37 37 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 38 38 H 1.08995 * 110.72855 * 51.59220 * 19 18 17 39 39 H 1.09002 * 110.30660 * 334.35274 * 20 19 18 40 40 H 1.09007 * 110.30077 * 96.49990 * 20 19 18 41 41 H 1.07998 * 119.89527 * 0.02562 * 22 21 20 42 42 H 1.07992 * 120.03829 * 180.02562 * 23 22 21 43 43 H 1.08007 * 120.02523 * 179.97438 * 24 23 22 44 44 H 1.08007 * 119.89294 * 180.02562 * 25 24 23 45 45 H 1.09004 * 110.30012 * 223.89010 * 27 26 21 46 46 H 1.08996 * 110.38382 * 101.78556 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 6 1.7356 1.1714 6.4275 21 6 1.0841 1.1538 7.7937 22 6 1.5068 1.6946 8.9966 23 6 0.7349 1.5509 10.1327 24 6 -0.4637 0.8645 10.0700 25 6 -0.8863 0.3237 8.8718 26 6 -0.1146 0.4686 7.7309 27 6 -0.3509 -0.0207 6.3180 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9053 1.7753 3.4681 36 1 0.3187 -0.4565 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 0.1138 1.7037 5.0630 39 1 2.5344 0.4312 6.3798 40 1 2.1262 2.1651 6.2075 41 1 2.4431 2.2305 9.0463 42 1 1.0671 1.9741 11.0691 43 1 -1.0685 0.7508 10.9577 44 1 -1.8230 -0.2120 8.8235 45 1 -1.3850 0.1588 6.0237 46 1 -0.1146 -1.0818 6.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337970867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:03 Heat of formation + Delta-G solvation = -58.019870 kcal Electronic energy + Delta-G solvation = -27459.657616 eV Core-core repulsion = 23668.410682 eV Total energy + Delta-G solvation = -3791.246934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39343 -37.08405 -36.58620 -36.15148 -35.21526 -34.04692 -32.57720 -31.63639 -29.54472 -29.09622 -27.49616 -25.62074 -25.26984 -25.09942 -22.11628 -21.16344 -20.86439 -20.54904 -18.72711 -17.25220 -16.90433 -16.65862 -16.36090 -16.06683 -15.75583 -15.18003 -15.12782 -14.60406 -14.19499 -13.80460 -13.46581 -13.45681 -13.25845 -13.12306 -13.03355 -12.83639 -12.48793 -12.29393 -11.99358 -11.73781 -11.49126 -11.41450 -11.35683 -11.31771 -11.23554 -11.15473 -11.02232 -10.97161 -10.91255 -10.80953 -10.46421 -10.26634 -10.01849 -9.32955 -9.22370 -9.02989 -8.70896 -8.45171 -7.97695 -6.07231 -4.13524 1.13520 1.16818 1.22142 3.29439 3.35867 3.38476 3.48873 3.54262 4.05633 4.20774 4.30994 4.40714 4.60807 4.78161 4.78761 4.82633 5.01236 5.04644 5.21156 5.24401 5.29318 5.39003 5.44044 5.49981 5.52160 5.57499 5.65705 5.73756 5.86556 5.93143 6.00029 6.11869 6.16513 6.22659 6.28167 6.36870 6.45572 6.62302 6.76644 6.78486 6.79050 7.01532 7.15540 7.48922 7.63923 7.79368 8.04453 8.28011 8.88823 9.52255 10.98489 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027316 B = 0.002530 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.794843 B =11066.036844 C =11417.558033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.780 3.220 15 O -0.997 6.997 16 O -0.975 6.975 17 N -1.133 6.133 18 C 0.130 3.870 19 C -0.093 4.093 20 C -0.081 4.081 21 C -0.093 4.093 22 C -0.109 4.109 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.108 4.108 26 C -0.095 4.095 27 C -0.077 4.077 28 H 0.011 0.989 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.412 0.588 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.079 0.921 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.233 -0.097 22.003 22.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.789 3.211 15 O -0.980 6.980 16 O -0.959 6.959 17 N -0.892 5.892 18 C 0.003 3.997 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.093 4.093 22 C -0.127 4.127 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.126 4.126 26 C -0.095 4.095 27 C -0.115 4.115 28 H 0.030 0.970 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.245 0.755 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.098 0.902 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.338 -0.146 21.839 22.266 hybrid contribution -0.220 -0.015 -0.755 0.786 sum -4.558 -0.161 21.084 21.571 Atomic orbital electron populations 1.22115 0.98292 0.99671 1.00630 1.18724 0.91256 0.92997 0.80502 0.92352 1.21338 1.31493 1.12985 0.90054 0.91966 1.24913 0.94973 0.95039 0.99014 1.69859 1.36566 1.22775 1.23753 0.86497 0.78659 0.79957 0.82285 1.20569 1.19892 1.21205 1.57683 1.70030 1.19759 1.35813 1.21160 1.01751 0.82211 0.98644 1.01925 0.73636 0.73167 0.72413 1.93534 1.69129 1.60784 1.74568 1.93616 1.74367 1.56000 1.71882 1.56199 1.62618 1.17353 1.53023 1.21236 0.94960 0.92927 0.90562 1.22066 0.95731 0.99191 0.94259 1.21193 0.97932 1.02951 0.89757 1.20674 0.95732 0.97723 0.95160 1.20659 1.00012 1.00250 0.91774 1.21033 0.95144 0.99778 0.98083 1.21023 0.96825 0.98817 0.97525 1.20630 0.99686 1.00434 0.91849 1.20606 0.95282 0.98341 0.95286 1.21063 1.00210 1.00247 0.89958 0.97020 0.88912 0.94791 0.92723 0.93276 0.93419 0.90969 0.75515 0.91335 0.90446 0.89109 0.89460 0.90432 0.86279 0.86053 0.86054 0.86276 0.90194 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.95 37.16 0.33 -2.92 16 2 C 0.27 6.44 2.62 -69.09 -0.18 6.26 16 3 H 0.06 1.56 6.91 -51.92 -0.36 1.20 16 4 C -0.52 -13.88 8.37 -34.44 -0.29 -14.17 16 5 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.65 11.32 55.43 0.63 -24.03 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.99 -19.95 3.12 -115.86 -0.36 -20.31 16 13 C 0.11 1.87 9.53 59.85 0.57 2.45 16 14 S 2.78 52.76 6.09 -107.50 -0.66 52.11 16 15 O -1.00 -20.14 16.68 -57.17 -0.95 -21.10 16 16 O -0.97 -22.37 16.70 -57.17 -0.95 -23.32 16 17 N -1.13 -15.62 5.98 -10.61 -0.06 -15.68 16 18 C 0.13 1.46 5.54 -4.04 -0.02 1.44 16 19 C -0.09 -0.88 3.11 -89.22 -0.28 -1.16 16 20 C -0.08 -0.80 6.25 -26.85 -0.17 -0.97 16 21 C -0.09 -0.95 6.14 -104.21 -0.64 -1.59 16 22 C -0.11 -1.02 10.04 -39.54 -0.40 -1.42 16 23 C -0.12 -1.03 10.05 -39.62 -0.40 -1.43 16 24 C -0.12 -1.02 10.05 -39.62 -0.40 -1.42 16 25 C -0.11 -0.96 10.04 -39.54 -0.40 -1.35 16 26 C -0.10 -0.93 6.14 -104.20 -0.64 -1.57 16 27 C -0.08 -0.67 6.32 -26.86 -0.17 -0.84 16 28 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 30 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 34 H 0.07 1.20 6.43 -51.93 -0.33 0.86 16 35 H 0.41 4.98 8.65 -34.47 -0.30 4.68 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.89 7.54 -51.93 -0.39 0.49 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.91 7.75 -51.93 -0.40 0.50 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 44 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.69 7.89 -51.93 -0.41 0.28 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -32.65 381.93 -11.82 -44.47 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.02 Total: 3.12 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -3.17 Total: -17.08 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.20 Total: -60.02 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -1.91 Total: -44.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 52.76 SS G_CDS: -0.66 Total: 52.11 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.65 -11.82 -44.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337970867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.552 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds