Wall clock time and date at job start Tue Mar 31 2020 20:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 C 1.54343 * 110.82146 * 287.96770 * 19 18 17 21 21 C 1.51369 * 105.17257 * 215.42509 * 20 19 18 22 22 C 1.38489 * 130.39032 * 197.19029 * 21 20 19 23 23 C 1.38109 * 120.21730 * 180.02562 * 22 21 20 24 24 C 1.38263 * 119.92678 * 0.02562 * 23 22 21 25 25 C 1.38094 * 119.93805 * 0.02562 * 24 23 22 26 26 C 1.38222 * 109.75646 * 17.19288 * 21 20 19 27 27 C 1.51373 * 109.75702 * 359.97438 * 26 21 20 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 36 36 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 37 37 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 38 38 H 1.08995 * 110.72855 * 51.59220 * 19 18 17 39 39 H 1.09002 * 110.30660 * 334.35274 * 20 19 18 40 40 H 1.09007 * 110.30077 * 96.49990 * 20 19 18 41 41 H 1.07998 * 119.89527 * 0.02562 * 22 21 20 42 42 H 1.07992 * 120.03829 * 180.02562 * 23 22 21 43 43 H 1.08007 * 120.02523 * 179.97438 * 24 23 22 44 44 H 1.08007 * 119.89294 * 180.02562 * 25 24 23 45 45 H 1.09004 * 110.30012 * 223.89010 * 27 26 21 46 46 H 1.08996 * 110.38382 * 101.78556 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 6 1.7356 1.1714 6.4275 21 6 1.0841 1.1538 7.7937 22 6 1.5068 1.6946 8.9966 23 6 0.7349 1.5509 10.1327 24 6 -0.4637 0.8645 10.0700 25 6 -0.8863 0.3237 8.8718 26 6 -0.1146 0.4686 7.7309 27 6 -0.3509 -0.0207 6.3180 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9053 1.7753 3.4681 36 1 0.3187 -0.4565 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 0.1138 1.7037 5.0630 39 1 2.5344 0.4312 6.3798 40 1 2.1262 2.1651 6.2075 41 1 2.4431 2.2305 9.0463 42 1 1.0671 1.9741 11.0691 43 1 -1.0685 0.7508 10.9577 44 1 -1.8230 -0.2120 8.8235 45 1 -1.3850 0.1588 6.0237 46 1 -0.1146 -1.0818 6.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337970867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:03 Heat of formation + Delta-G solvation = -78.677925 kcal Electronic energy + Delta-G solvation = -27460.553416 eV Core-core repulsion = 23668.410682 eV Total energy + Delta-G solvation = -3792.142735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07055 -38.34049 -37.92650 -37.70024 -36.85827 -35.01189 -34.50395 -32.28516 -30.88677 -30.34194 -28.17473 -27.26244 -26.97965 -26.11179 -22.83889 -22.56721 -21.79440 -21.42165 -20.17371 -18.75510 -18.54997 -18.12712 -17.40798 -17.11898 -16.87500 -16.58195 -16.00061 -15.88580 -15.30555 -15.11544 -14.76789 -14.69347 -14.44233 -14.11941 -13.90710 -13.73362 -13.72314 -13.44845 -13.37823 -13.26126 -13.14039 -13.08016 -12.96282 -12.79678 -12.57160 -12.28539 -12.21329 -12.12131 -12.05342 -11.95499 -11.87391 -11.72681 -11.61917 -11.12243 -10.50254 -10.40412 -9.68565 -9.64450 -9.37571 -8.10644 -6.23650 -0.28841 0.47834 0.51131 1.42498 1.44826 1.53521 2.07913 2.44254 2.66857 2.88086 3.17764 3.39725 3.48399 3.59904 3.87252 4.07845 4.13246 4.20279 4.20858 4.32814 4.42615 4.53004 4.64861 4.71267 4.76561 4.80307 4.82708 4.86289 4.87863 4.99636 5.01852 5.04958 5.08518 5.18692 5.22671 5.25342 5.27266 5.39459 5.58653 5.63765 5.64906 5.74008 5.77821 5.90727 6.08885 6.15863 6.23437 6.33178 6.84137 7.45160 8.93348 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027316 B = 0.002530 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.794843 B =11066.036844 C =11417.558033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.273 3.727 3 H 0.025 0.975 4 C -0.537 4.537 5 H 0.055 0.945 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.284 1.284 10 H -0.267 1.267 11 H -0.279 1.279 12 N -0.996 5.996 13 C 0.102 3.898 14 S 2.797 3.203 15 O -1.010 7.010 16 O -1.020 7.020 17 N -1.117 6.117 18 C 0.123 3.877 19 C -0.086 4.086 20 C -0.083 4.083 21 C -0.114 4.114 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.118 4.118 26 C -0.109 4.109 27 C -0.073 4.073 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.422 0.578 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.126 0.874 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.136 0.864 45 H 0.092 0.908 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.528 -0.953 23.500 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.042 0.958 4 C -0.577 4.577 5 H 0.073 0.927 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.210 1.210 10 H -0.191 1.191 11 H -0.204 1.204 12 N -0.838 5.838 13 C -0.044 4.044 14 S 2.806 3.194 15 O -0.993 6.993 16 O -1.004 7.004 17 N -0.881 5.881 18 C -0.002 4.002 19 C -0.105 4.105 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.136 4.136 26 C -0.109 4.109 27 C -0.111 4.111 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.257 0.743 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.144 0.856 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.154 0.846 45 H 0.111 0.889 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.632 -1.019 23.345 24.036 hybrid contribution 0.191 0.264 -1.075 1.123 sum -5.441 -0.755 22.270 22.937 Atomic orbital electron populations 1.21902 0.96635 1.00306 1.00569 1.18396 0.92378 0.91280 0.81126 0.95770 1.21666 1.31494 1.12968 0.91569 0.92673 1.25624 0.95274 0.95762 1.01614 1.69973 1.37291 1.23710 1.24287 0.85629 0.77914 0.79202 0.79309 1.20976 1.19146 1.20404 1.57553 1.69994 1.21027 1.35248 1.21373 1.01722 0.80357 1.00924 1.01178 0.73612 0.72292 0.72325 1.93513 1.69879 1.61311 1.74601 1.93551 1.75975 1.57478 1.73404 1.55731 1.62305 1.18102 1.51924 1.21505 0.94983 0.92909 0.90828 1.21996 0.95775 0.99289 0.93484 1.21189 0.97881 1.02762 0.90167 1.20818 0.96362 0.98749 0.95436 1.20905 1.00688 1.00578 0.92067 1.21344 0.95162 0.99600 0.98591 1.21373 0.96918 0.98076 0.98240 1.20924 1.00311 1.00538 0.91801 1.20824 0.95372 0.98597 0.96096 1.21059 1.00550 1.00353 0.89135 0.94293 0.91676 0.93704 0.92679 0.94318 0.90000 0.90195 0.74301 0.89897 0.90370 0.88518 0.90398 0.90319 0.85567 0.84093 0.83823 0.84597 0.88905 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.95 71.98 0.64 -5.18 16 2 C 0.27 13.15 2.62 44.24 0.12 13.27 16 3 H 0.02 1.34 6.91 -2.38 -0.02 1.32 16 4 C -0.54 -28.96 8.37 25.60 0.21 -28.74 16 5 H 0.06 2.97 7.65 -2.91 -0.02 2.95 16 6 C 0.02 0.93 5.30 84.66 0.45 1.37 16 7 N -0.91 -51.06 11.32 21.45 0.24 -50.82 16 8 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 9 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 N -1.00 -39.54 3.12 -520.46 -1.62 -41.16 16 13 C 0.10 3.34 9.53 127.77 1.22 4.56 16 14 S 2.80 105.32 6.09 -56.49 -0.34 104.98 16 15 O -1.01 -40.07 16.68 -128.00 -2.14 -42.20 16 16 O -1.02 -47.81 16.70 -128.00 -2.14 -49.95 16 17 N -1.12 -29.45 5.98 -187.47 -1.12 -30.57 16 18 C 0.12 2.52 5.54 86.38 0.48 3.00 16 19 C -0.09 -1.46 3.11 -9.89 -0.03 -1.49 16 20 C -0.08 -1.56 6.25 30.52 0.19 -1.37 16 21 C -0.11 -2.20 6.14 -19.60 -0.12 -2.32 16 22 C -0.12 -2.22 10.04 22.30 0.22 -1.99 16 23 C -0.13 -1.96 10.05 22.24 0.22 -1.73 16 24 C -0.13 -1.84 10.05 22.24 0.22 -1.62 16 25 C -0.12 -1.85 10.04 22.30 0.22 -1.62 16 26 C -0.11 -1.94 6.14 -19.59 -0.12 -2.06 16 27 C -0.07 -1.10 6.32 30.51 0.19 -0.91 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 30 H 0.04 1.79 6.66 -2.39 -0.02 1.78 16 31 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 2.10 7.79 -2.38 -0.02 2.08 16 34 H 0.08 2.49 6.43 -2.39 -0.02 2.47 16 35 H 0.42 9.77 8.65 -96.74 -0.84 8.93 16 36 H 0.08 1.50 8.14 -2.38 -0.02 1.49 16 37 H 0.08 1.62 7.54 -2.38 -0.02 1.60 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.58 7.75 -2.39 -0.02 1.56 16 40 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 44 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 45 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.09 1.26 7.89 -2.39 -0.02 1.24 16 Total: -1.00 -70.36 381.93 -0.82 -71.19 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.14 Total: 20.07 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 4.13 Total: -26.84 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -2.50 Total: -122.55 kcal Atomic # 8 Polarization: -87.88 SS G_CDS: -4.27 Total: -92.15 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 105.32 SS G_CDS: -0.34 Total: 104.98 kcal Total: -70.36 -0.82 -71.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337970867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.491 kcal (2) G-P(sol) polarization free energy of solvation -70.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds