Wall clock time and date at job start Tue Mar 31 2020 20:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47281 * 2 1 4 4 C 1.50708 * 109.46767 * 120.00175 * 2 1 3 5 5 H 1.07995 * 120.00088 * 120.00065 * 4 2 1 6 6 C 1.37875 * 119.99900 * 299.99804 * 4 2 1 7 7 N 1.31513 * 120.00269 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99833 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47109 * 90.00065 * 8 6 4 10 10 H 1.48505 * 109.46923 * 209.99887 * 8 6 4 11 11 H 1.48501 * 109.47566 * 329.99840 * 8 6 4 12 12 N 1.46505 * 109.47299 * 239.99448 * 2 1 3 13 13 C 1.46501 * 120.00135 * 300.00594 * 12 2 1 14 14 S 1.65600 * 119.99390 * 120.00243 * 12 2 1 15 15 O 1.42099 * 106.40625 * 336.46524 * 14 12 2 16 16 O 1.42104 * 106.39826 * 203.54269 * 14 12 2 17 17 N 1.65594 * 107.21703 * 90.00522 * 14 12 2 18 18 C 1.46500 * 120.00104 * 64.99551 * 17 14 12 19 19 C 1.53003 * 109.47124 * 165.00176 * 18 17 14 20 20 C 1.54347 * 110.82281 * 185.00253 * 19 18 17 21 21 C 1.51370 * 105.25432 * 215.37532 * 20 19 18 22 22 C 1.38309 * 130.55124 * 197.14857 * 21 20 19 23 23 C 1.38105 * 120.28108 * 180.02562 * 22 21 20 24 24 C 1.38256 * 119.93490 * 0.03279 * 23 22 21 25 25 C 1.38107 * 119.93596 * 359.97438 * 24 23 22 26 26 C 1.38451 * 109.62635 * 17.23355 * 21 20 19 27 27 C 1.51365 * 109.79657 * 359.95699 * 26 21 20 28 28 H 1.09003 * 109.47430 * 299.99987 * 1 2 3 29 29 H 1.09006 * 109.46766 * 60.00131 * 1 2 3 30 30 H 1.08996 * 109.47281 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99880 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47023 * 269.99860 * 13 12 2 33 33 H 1.08995 * 109.46924 * 29.99707 * 13 12 2 34 34 H 1.08996 * 109.46668 * 149.99767 * 13 12 2 35 35 H 0.97007 * 120.00211 * 244.99436 * 17 14 12 36 36 H 1.08996 * 109.47085 * 45.00498 * 18 17 14 37 37 H 1.08994 * 109.47153 * 284.99685 * 18 17 14 38 38 H 1.09008 * 110.88241 * 308.51640 * 19 18 17 39 39 H 1.09002 * 110.30226 * 334.34973 * 20 19 18 40 40 H 1.08997 * 110.30441 * 96.40533 * 20 19 18 41 41 H 1.07991 * 119.82817 * 0.06382 * 22 21 20 42 42 H 1.07992 * 120.03227 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.03517 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.89218 * 180.02562 * 25 24 23 45 45 H 1.08994 * 110.30543 * 223.91072 * 27 26 21 46 46 H 1.09006 * 110.38145 * 101.80589 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2394 2.4828 7 7 2.1378 -0.8591 3.5566 8 14 0.6246 1.2790 2.6541 9 1 -0.8029 0.8727 2.6997 10 1 0.9758 1.9951 3.9068 11 1 0.8469 2.1765 1.4920 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9705 0.1141 -2.2861 15 8 2.6905 1.4972 -2.1191 16 8 2.8228 -0.5647 -3.5258 17 7 4.5437 -0.1044 -1.8178 18 6 5.1357 -1.4443 -1.8413 19 6 6.6577 -1.3314 -1.7332 20 6 7.3224 -2.7166 -1.8801 21 6 8.5152 -2.6868 -0.9486 22 6 9.6330 -3.4994 -0.8927 23 6 10.6076 -3.2784 0.0605 24 6 10.4667 -2.2413 0.9638 25 6 9.3517 -1.4281 0.9109 26 6 8.3729 -1.6485 -0.0439 27 6 7.0770 -0.9122 -0.3082 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.9031 -0.5278 4.4376 32 1 2.4156 -2.7378 -0.9715 33 1 0.6904 -2.3002 -0.9846 34 1 1.6238 -2.2853 -2.5001 35 1 5.0734 0.6548 -1.5280 36 1 4.8737 -1.9409 -2.7755 37 1 4.7539 -2.0249 -1.0016 38 1 7.0491 -0.6333 -2.4733 39 1 6.6287 -3.5026 -1.5814 40 1 7.6493 -2.8722 -2.9082 41 1 9.7439 -4.3096 -1.5980 42 1 11.4790 -3.9151 0.1002 43 1 11.2281 -2.0668 1.7096 44 1 9.2425 -0.6179 1.6167 45 1 7.2378 0.1648 -0.2626 46 1 6.3165 -1.2113 0.4132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337970868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:06 Heat of formation + Delta-G solvation = -50.455529 kcal Electronic energy + Delta-G solvation = -27906.907849 eV Core-core repulsion = 24115.988929 eV Total energy + Delta-G solvation = -3790.918920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.21856 -37.00531 -36.70470 -36.39718 -35.38375 -33.93832 -32.54397 -31.47127 -30.03780 -29.41098 -27.32839 -25.83058 -25.13952 -25.02031 -21.95832 -21.04789 -20.91693 -20.39799 -18.79801 -17.44312 -17.00240 -16.58964 -16.46135 -16.18814 -15.60897 -15.30573 -15.03027 -14.58151 -14.13683 -13.77922 -13.63156 -13.42576 -13.26569 -13.04297 -12.84177 -12.78364 -12.42036 -12.32279 -12.23938 -12.11815 -11.99743 -11.65871 -11.43245 -11.25791 -11.24878 -11.15775 -11.06618 -10.99677 -10.90780 -10.79259 -10.49323 -10.16021 -9.63228 -9.47165 -9.18742 -8.86385 -8.68553 -8.52788 -8.13217 -6.18971 -4.20009 1.13885 1.30327 1.34369 3.21110 3.33827 3.34964 3.37906 3.70667 4.00948 4.30405 4.31131 4.45002 4.72593 4.92267 4.94754 4.96136 5.00220 5.12656 5.17446 5.30181 5.43822 5.51600 5.56439 5.61741 5.65758 5.73195 5.78931 5.92019 5.98073 6.08787 6.08881 6.17396 6.18155 6.25636 6.30695 6.37992 6.39316 6.44726 6.52512 6.54081 6.62998 6.82979 6.95508 7.15364 7.29921 7.40152 7.61576 8.40265 8.83871 9.42232 10.93293 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.003754 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.751826 B = 7456.374723 C = 8972.409585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.239 3.761 3 H 0.057 0.943 4 C -0.525 4.525 5 H 0.082 0.918 6 C 0.076 3.924 7 N -0.893 5.893 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.984 5.984 13 C 0.097 3.903 14 S 2.787 3.213 15 O -0.985 6.985 16 O -0.995 6.995 17 N -1.126 6.126 18 C 0.130 3.870 19 C -0.092 4.092 20 C -0.076 4.076 21 C -0.097 4.097 22 C -0.109 4.109 23 C -0.126 4.126 24 C -0.122 4.122 25 C -0.108 4.108 26 C -0.088 4.088 27 C -0.084 4.084 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.265 0.735 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.413 0.587 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.076 0.924 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.404 -4.065 -8.852 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.564 4.564 5 H 0.100 0.900 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.706 3.294 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.826 5.826 13 C -0.049 4.049 14 S 2.795 3.205 15 O -0.969 6.969 16 O -0.979 6.979 17 N -0.885 5.885 18 C 0.004 3.996 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.097 4.097 22 C -0.127 4.127 23 C -0.144 4.144 24 C -0.140 4.140 25 C -0.126 4.126 26 C -0.088 4.088 27 C -0.121 4.121 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.246 0.754 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.095 0.905 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.986 -3.744 -9.493 15.742 hybrid contribution -0.160 0.790 1.037 1.313 sum 11.827 -2.954 -8.456 14.836 Atomic orbital electron populations 1.22433 0.98943 1.01311 0.99231 1.19075 0.90898 0.93363 0.83189 0.92569 1.21198 1.32688 1.14292 0.88254 0.89980 1.24886 0.95557 0.96499 0.95774 1.69871 1.45145 1.40102 0.97967 0.87036 0.80836 0.84014 0.77540 1.20336 1.22203 1.18622 1.57406 1.64797 1.21599 1.38791 1.21331 1.02153 0.81410 0.99992 1.01642 0.72625 0.72944 0.73290 1.93587 1.83794 1.32556 1.86936 1.93540 1.86052 1.76349 1.41923 1.55918 1.32115 1.15095 1.85360 1.21255 0.92451 0.83617 1.02287 1.22050 0.94444 0.97179 0.97512 1.21046 0.94204 0.97512 0.98585 1.20597 0.95533 0.95973 0.97621 1.20540 0.93561 0.99378 0.99211 1.20990 0.99064 0.98389 0.95935 1.21025 0.97878 0.95818 0.99273 1.20689 0.93617 1.00037 0.98267 1.20735 0.95824 0.96811 0.95407 1.21230 0.94037 1.00018 0.96847 0.93269 0.94664 0.92228 0.92479 0.93391 0.90589 0.91770 0.75384 0.90509 0.90862 0.89392 0.89518 0.90459 0.86439 0.86163 0.86103 0.86182 0.90534 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 8.65 37.16 0.32 -3.06 16 2 C 0.24 5.38 2.21 -69.08 -0.15 5.23 16 3 H 0.06 1.34 5.97 -51.93 -0.31 1.03 16 4 C -0.53 -13.42 8.95 -34.44 -0.31 -13.72 16 5 H 0.08 2.23 7.89 -52.49 -0.41 1.81 16 6 C 0.08 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.89 -25.66 13.96 55.43 0.77 -24.89 16 8 Si 0.88 20.95 24.37 -169.99 -4.14 16.81 16 9 H -0.28 -6.42 6.87 56.52 0.39 -6.04 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.26 -6.13 6.53 56.52 0.37 -5.76 16 12 N -0.98 -18.83 3.12 -115.85 -0.36 -19.19 16 13 C 0.10 1.60 9.90 59.85 0.59 2.19 16 14 S 2.79 50.25 6.14 -107.50 -0.66 49.59 16 15 O -0.98 -20.72 16.70 -57.17 -0.95 -21.67 16 16 O -1.00 -18.78 16.21 -57.17 -0.93 -19.71 16 17 N -1.13 -16.38 6.00 -10.61 -0.06 -16.44 16 18 C 0.13 1.65 5.54 -4.04 -0.02 1.62 16 19 C -0.09 -1.01 3.14 -89.21 -0.28 -1.29 16 20 C -0.08 -0.77 6.31 -26.85 -0.17 -0.94 16 21 C -0.10 -1.12 6.15 -104.19 -0.64 -1.76 16 22 C -0.11 -1.14 10.03 -39.60 -0.40 -1.54 16 23 C -0.13 -1.25 10.05 -39.62 -0.40 -1.65 16 24 C -0.12 -1.27 10.05 -39.62 -0.40 -1.67 16 25 C -0.11 -1.27 10.04 -39.53 -0.40 -1.66 16 26 C -0.09 -1.09 6.14 -104.12 -0.64 -1.73 16 27 C -0.08 -1.03 6.11 -26.86 -0.16 -1.19 16 28 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.17 6.66 -51.93 -0.35 0.83 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.24 6.43 -51.93 -0.33 0.91 16 34 H 0.06 0.95 7.02 -51.93 -0.36 0.58 16 35 H 0.41 5.40 8.51 -34.47 -0.29 5.10 16 36 H 0.08 0.91 7.75 -51.93 -0.40 0.51 16 37 H 0.07 0.98 7.93 -51.93 -0.41 0.57 16 38 H 0.09 0.90 8.14 -51.92 -0.42 0.47 16 39 H 0.09 0.85 7.89 -51.93 -0.41 0.44 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.10 1.34 7.75 -51.93 -0.40 0.94 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -32.14 374.05 -10.69 -42.84 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.84 Total: 6.23 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -3.15 Total: -19.20 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.35 Total: -60.52 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -1.88 Total: -41.38 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.14 Total: 16.81 kcal Atomic # 16 Polarization: 50.25 SS G_CDS: -0.66 Total: 49.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.14 -10.69 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337970868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.616 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds