Wall clock time and date at job start Tue Mar 31 2020 20:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47281 * 2 1 4 4 C 1.50708 * 109.46767 * 120.00175 * 2 1 3 5 5 H 1.07995 * 120.00088 * 120.00065 * 4 2 1 6 6 C 1.37875 * 119.99900 * 299.99804 * 4 2 1 7 7 N 1.31513 * 120.00269 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99833 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47109 * 90.00065 * 8 6 4 10 10 H 1.48505 * 109.46923 * 209.99887 * 8 6 4 11 11 H 1.48501 * 109.47566 * 329.99840 * 8 6 4 12 12 N 1.46505 * 109.47299 * 239.99448 * 2 1 3 13 13 C 1.46501 * 120.00135 * 300.00594 * 12 2 1 14 14 S 1.65600 * 119.99390 * 120.00243 * 12 2 1 15 15 O 1.42099 * 106.40625 * 336.46524 * 14 12 2 16 16 O 1.42104 * 106.39826 * 203.54269 * 14 12 2 17 17 N 1.65594 * 107.21703 * 90.00522 * 14 12 2 18 18 C 1.46500 * 120.00104 * 64.99551 * 17 14 12 19 19 C 1.53003 * 109.47124 * 165.00176 * 18 17 14 20 20 C 1.54347 * 110.82281 * 185.00253 * 19 18 17 21 21 C 1.51370 * 105.25432 * 215.37532 * 20 19 18 22 22 C 1.38309 * 130.55124 * 197.14857 * 21 20 19 23 23 C 1.38105 * 120.28108 * 180.02562 * 22 21 20 24 24 C 1.38256 * 119.93490 * 0.03279 * 23 22 21 25 25 C 1.38107 * 119.93596 * 359.97438 * 24 23 22 26 26 C 1.38451 * 109.62635 * 17.23355 * 21 20 19 27 27 C 1.51365 * 109.79657 * 359.95699 * 26 21 20 28 28 H 1.09003 * 109.47430 * 299.99987 * 1 2 3 29 29 H 1.09006 * 109.46766 * 60.00131 * 1 2 3 30 30 H 1.08996 * 109.47281 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99880 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47023 * 269.99860 * 13 12 2 33 33 H 1.08995 * 109.46924 * 29.99707 * 13 12 2 34 34 H 1.08996 * 109.46668 * 149.99767 * 13 12 2 35 35 H 0.97007 * 120.00211 * 244.99436 * 17 14 12 36 36 H 1.08996 * 109.47085 * 45.00498 * 18 17 14 37 37 H 1.08994 * 109.47153 * 284.99685 * 18 17 14 38 38 H 1.09008 * 110.88241 * 308.51640 * 19 18 17 39 39 H 1.09002 * 110.30226 * 334.34973 * 20 19 18 40 40 H 1.08997 * 110.30441 * 96.40533 * 20 19 18 41 41 H 1.07991 * 119.82817 * 0.06382 * 22 21 20 42 42 H 1.07992 * 120.03227 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.03517 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.89218 * 180.02562 * 25 24 23 45 45 H 1.08994 * 110.30543 * 223.91072 * 27 26 21 46 46 H 1.09006 * 110.38145 * 101.80589 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6991 -0.2394 2.4828 7 7 2.1378 -0.8591 3.5566 8 14 0.6246 1.2790 2.6541 9 1 -0.8029 0.8727 2.6997 10 1 0.9758 1.9951 3.9068 11 1 0.8469 2.1765 1.4920 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9705 0.1141 -2.2861 15 8 2.6905 1.4972 -2.1191 16 8 2.8228 -0.5647 -3.5258 17 7 4.5437 -0.1044 -1.8178 18 6 5.1357 -1.4443 -1.8413 19 6 6.6577 -1.3314 -1.7332 20 6 7.3224 -2.7166 -1.8801 21 6 8.5152 -2.6868 -0.9486 22 6 9.6330 -3.4994 -0.8927 23 6 10.6076 -3.2784 0.0605 24 6 10.4667 -2.2413 0.9638 25 6 9.3517 -1.4281 0.9109 26 6 8.3729 -1.6485 -0.0439 27 6 7.0770 -0.9122 -0.3082 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.9031 -0.5278 4.4376 32 1 2.4156 -2.7378 -0.9715 33 1 0.6904 -2.3002 -0.9846 34 1 1.6238 -2.2853 -2.5001 35 1 5.0734 0.6548 -1.5280 36 1 4.8737 -1.9409 -2.7755 37 1 4.7539 -2.0249 -1.0016 38 1 7.0491 -0.6333 -2.4733 39 1 6.6287 -3.5026 -1.5814 40 1 7.6493 -2.8722 -2.9082 41 1 9.7439 -4.3096 -1.5980 42 1 11.4790 -3.9151 0.1002 43 1 11.2281 -2.0668 1.7096 44 1 9.2425 -0.6179 1.6167 45 1 7.2378 0.1648 -0.2626 46 1 6.3165 -1.2113 0.4132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337970868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:06 Heat of formation + Delta-G solvation = -71.778764 kcal Electronic energy + Delta-G solvation = -27907.832494 eV Core-core repulsion = 24115.988929 eV Total energy + Delta-G solvation = -3791.843564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.06670 -38.39756 -38.09170 -37.74236 -36.91771 -34.99665 -34.50093 -32.29741 -31.77086 -30.34760 -28.19074 -27.35070 -26.89647 -26.13336 -22.84931 -22.65795 -21.83156 -21.35417 -20.21969 -19.05166 -18.46744 -18.30311 -17.69142 -17.16784 -16.95728 -16.56138 -16.09116 -15.82081 -15.33931 -15.12019 -14.96139 -14.82843 -14.46181 -14.18883 -14.12763 -13.85759 -13.81934 -13.73688 -13.52509 -13.46348 -13.29640 -13.18941 -13.04897 -12.94252 -12.76310 -12.23166 -12.09725 -12.06268 -12.01025 -11.91283 -11.82809 -11.62606 -11.46488 -11.31069 -10.74073 -10.42307 -9.72944 -9.69575 -9.37459 -8.27720 -6.30665 -0.30296 0.47041 0.50890 1.31033 1.39995 1.47007 1.95988 2.32441 2.59497 2.87529 3.07466 3.37477 3.44509 3.56847 3.91575 4.01165 4.10640 4.18495 4.20066 4.25766 4.41037 4.46258 4.60821 4.63553 4.66479 4.72221 4.74563 4.77129 4.82787 4.83640 4.86347 4.91452 5.01311 5.03740 5.13617 5.19923 5.24403 5.27111 5.39184 5.49669 5.58088 5.59178 5.63874 5.77590 5.83226 6.14774 6.15577 6.36358 6.74808 7.34567 8.87478 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.003754 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.751826 B = 7456.374723 C = 8972.409585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.241 3.759 3 H 0.044 0.956 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.027 3.973 7 N -0.938 5.938 8 Si 0.923 3.077 9 H -0.263 1.263 10 H -0.299 1.299 11 H -0.254 1.254 12 N -0.991 5.991 13 C 0.092 3.908 14 S 2.802 3.198 15 O -1.014 7.014 16 O -1.000 7.000 17 N -1.119 6.119 18 C 0.128 3.872 19 C -0.084 4.084 20 C -0.072 4.072 21 C -0.109 4.109 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.129 4.129 25 C -0.128 4.128 26 C -0.114 4.114 27 C -0.084 4.084 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.265 0.735 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.420 0.580 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.141 0.859 44 H 0.121 0.879 45 H 0.078 0.922 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.932 -4.553 -10.470 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.135 3.865 3 H 0.062 0.938 4 C -0.551 4.551 5 H 0.075 0.925 6 C -0.172 4.172 7 N -0.578 5.578 8 Si 0.751 3.249 9 H -0.188 1.188 10 H -0.227 1.227 11 H -0.178 1.178 12 N -0.831 5.831 13 C -0.053 4.053 14 S 2.810 3.190 15 O -0.999 6.999 16 O -0.984 6.984 17 N -0.881 5.881 18 C 0.002 3.998 19 C -0.103 4.103 20 C -0.110 4.110 21 C -0.109 4.109 22 C -0.134 4.134 23 C -0.145 4.145 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.114 4.114 27 C -0.121 4.121 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.255 0.745 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.158 0.842 42 H 0.165 0.835 43 H 0.159 0.841 44 H 0.139 0.861 45 H 0.096 0.904 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.501 -4.239 -11.136 17.270 hybrid contribution -0.195 0.854 1.511 1.747 sum 12.305 -3.385 -9.625 15.985 Atomic orbital electron populations 1.22396 0.97465 1.02345 0.99851 1.18833 0.92068 0.92500 0.83062 0.93847 1.21377 1.31176 1.13100 0.89487 0.92467 1.25542 0.96996 0.99016 0.95669 1.69992 1.47263 1.42024 0.98472 0.86251 0.80089 0.81176 0.77353 1.18839 1.22691 1.17837 1.57373 1.65545 1.22592 1.37615 1.21510 1.02348 0.80067 1.01413 1.01077 0.72930 0.71963 0.72986 1.93542 1.84604 1.34446 1.87287 1.93529 1.86453 1.76280 1.42090 1.55678 1.30991 1.16328 1.85073 1.21404 0.93512 0.82378 1.02537 1.21993 0.93155 0.98303 0.96887 1.21057 0.93704 0.96690 0.99549 1.20843 0.96369 0.95962 0.97724 1.20882 0.93129 0.99659 0.99712 1.21377 0.99727 0.98213 0.95162 1.21336 0.97812 0.95639 0.99884 1.20911 0.94359 1.00785 0.98532 1.20874 0.96121 0.97830 0.96532 1.21170 0.93638 1.00220 0.97079 0.94053 0.92566 0.91111 0.92582 0.92960 0.90490 0.89707 0.74516 0.89097 0.91969 0.88111 0.89322 0.88347 0.84217 0.83499 0.84092 0.86113 0.90382 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.52 8.65 71.98 0.62 -5.89 16 2 C 0.24 10.67 2.21 44.25 0.10 10.77 16 3 H 0.04 2.06 5.97 -2.39 -0.01 2.04 16 4 C -0.51 -26.36 8.95 25.60 0.23 -26.13 16 5 H 0.06 3.18 7.89 -2.91 -0.02 3.15 16 6 C 0.03 1.45 5.45 84.65 0.46 1.91 16 7 N -0.94 -55.01 13.96 21.45 0.30 -54.71 16 8 Si 0.92 42.91 24.37 68.60 1.67 44.58 16 9 H -0.26 -11.53 6.87 99.48 0.68 -10.84 16 10 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 11 H -0.25 -11.40 6.53 99.48 0.65 -10.75 16 12 N -0.99 -36.91 3.12 -520.45 -1.62 -38.53 16 13 C 0.09 2.90 9.90 127.77 1.27 4.16 16 14 S 2.80 98.02 6.14 -56.49 -0.35 97.67 16 15 O -1.01 -41.92 16.70 -128.00 -2.14 -44.06 16 16 O -1.00 -35.85 16.21 -128.00 -2.08 -37.92 16 17 N -1.12 -31.80 6.00 -187.50 -1.13 -32.92 16 18 C 0.13 3.11 5.54 86.38 0.48 3.59 16 19 C -0.08 -1.76 3.14 -9.88 -0.03 -1.79 16 20 C -0.07 -1.36 6.31 30.52 0.19 -1.16 16 21 C -0.11 -2.40 6.15 -19.58 -0.12 -2.52 16 22 C -0.12 -2.20 10.03 22.25 0.22 -1.98 16 23 C -0.13 -2.26 10.05 22.24 0.22 -2.04 16 24 C -0.13 -2.54 10.05 22.24 0.22 -2.31 16 25 C -0.13 -3.01 10.04 22.30 0.22 -2.79 16 26 C -0.11 -2.83 6.14 -19.54 -0.12 -2.95 16 27 C -0.08 -2.09 6.11 30.51 0.19 -1.91 16 28 H 0.04 1.72 3.27 -2.39 -0.01 1.72 16 29 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.07 2.65 6.66 -2.39 -0.02 2.63 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 2.40 6.43 -2.39 -0.02 2.38 16 34 H 0.08 2.32 7.02 -2.39 -0.02 2.31 16 35 H 0.42 10.82 8.51 -96.74 -0.82 10.00 16 36 H 0.09 1.98 7.75 -2.39 -0.02 1.97 16 37 H 0.06 1.67 7.93 -2.39 -0.02 1.65 16 38 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.09 1.62 7.89 -2.39 -0.02 1.60 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.14 1.95 8.06 -2.92 -0.02 1.92 16 42 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 44 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.07 2.05 7.75 -2.38 -0.02 2.03 16 Total: -1.00 -68.25 374.05 -1.09 -69.35 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.09 Total: 27.59 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 4.16 Total: -31.04 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -2.45 Total: -126.17 kcal Atomic # 8 Polarization: -77.77 SS G_CDS: -4.21 Total: -81.98 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.67 Total: 44.58 kcal Atomic # 16 Polarization: 98.02 SS G_CDS: -0.35 Total: 97.67 kcal Total: -68.25 -1.09 -69.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337970868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.434 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds