Wall clock time and date at job start Tue Mar 31 2020 21:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 5 5 C 1.34779 * 119.99965 * 85.00573 * 4 2 1 6 6 O 1.21701 * 119.99841 * 359.97438 * 5 4 2 7 7 C 1.46582 * 119.99962 * 179.97438 * 5 4 2 8 8 C 1.36646 * 125.45912 * 179.97438 * 7 5 4 9 9 C 1.37476 * 113.29668 * 180.02562 * 8 7 5 10 10 C 1.33812 * 115.10197 * 359.97438 * 9 8 7 11 11 S 1.70621 * 110.95576 * 359.72834 * 10 9 8 12 12 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 13 13 O 1.21280 * 120.00255 * 119.99948 * 12 2 1 14 14 N 1.34779 * 120.00378 * 299.99920 * 12 2 1 15 15 C 1.46497 * 120.00488 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47188 * 179.97438 * 15 14 12 17 17 C 1.53008 * 109.47280 * 300.00108 * 16 15 14 18 18 C 1.52996 * 109.46947 * 60.00215 * 16 15 14 19 19 C 1.53002 * 109.47143 * 180.02562 * 16 15 14 20 20 C 1.50703 * 109.47292 * 180.02562 * 19 16 15 21 21 H 1.08003 * 119.99742 * 359.97438 * 20 19 16 22 22 C 1.37873 * 119.99873 * 179.97438 * 20 19 16 23 23 N 1.31520 * 119.99883 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00328 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47102 * 89.99993 * 24 22 20 26 26 H 1.48494 * 109.47205 * 210.00004 * 24 22 20 27 27 H 1.48503 * 109.46783 * 329.99706 * 24 22 20 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 0.97003 * 119.99991 * 264.99646 * 4 2 1 32 32 H 1.08003 * 123.35087 * 359.97438 * 8 7 5 33 33 H 1.08000 * 122.44463 * 180.02562 * 9 8 7 34 34 H 1.07994 * 124.52295 * 180.02562 * 10 9 8 35 35 H 0.97003 * 119.99556 * 0.02562 * 14 12 2 36 36 H 1.08988 * 109.47204 * 300.00557 * 15 14 12 37 37 H 1.09002 * 109.46725 * 60.00113 * 15 14 12 38 38 H 1.09001 * 109.46630 * 60.00000 * 17 16 15 39 39 H 1.09004 * 109.46943 * 179.97438 * 17 16 15 40 40 H 1.08992 * 109.47290 * 300.00245 * 17 16 15 41 41 H 1.08996 * 109.47261 * 60.00229 * 18 16 15 42 42 H 1.09000 * 109.46870 * 179.97438 * 18 16 15 43 43 H 1.08992 * 109.47554 * 299.99696 * 18 16 15 44 44 H 1.09004 * 109.46930 * 300.00065 * 19 16 15 45 45 H 1.09002 * 109.47067 * 59.99982 * 19 16 15 46 46 H 0.96998 * 120.00300 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8574 1.1625 -2.4118 7 6 2.6363 -0.7091 -3.5538 8 6 2.8087 -0.1389 -4.7835 9 6 3.2806 -1.0181 -5.7292 10 6 3.4885 -2.2653 -5.2912 11 16 3.1025 -2.4026 -3.6349 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7068 -0.2500 2.4546 15 6 2.1945 -0.9409 3.6508 16 6 1.6852 -0.2191 4.9000 17 6 2.1963 1.2230 4.8999 18 6 0.1552 -0.2180 4.9000 19 6 2.1951 -0.9404 6.1493 20 6 1.6929 -0.2298 7.3798 21 1 1.0724 0.6486 7.2806 22 6 2.0256 -0.7012 8.6320 23 7 1.5877 -0.0808 9.7058 24 14 3.0994 -2.2200 8.8035 25 1 4.5271 -1.8142 8.8494 26 1 2.7477 -2.9360 10.0560 27 1 2.8769 -3.1173 7.6412 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2491 -1.6318 -1.1525 32 1 2.5948 0.8990 -4.9920 33 1 3.4704 -0.7234 -6.7508 34 1 3.8565 -3.0755 -5.9031 35 1 1.1488 0.5385 2.5436 36 1 1.8309 -1.9683 3.6506 37 1 3.2846 -0.9413 3.6510 38 1 1.8333 1.7370 4.0099 39 1 1.8330 1.7373 5.7897 40 1 3.2862 1.2222 4.8998 41 1 -0.2089 -1.2453 4.9001 42 1 -0.2077 0.2958 5.7902 43 1 -0.2078 0.2961 4.0101 44 1 1.8313 -1.9679 6.1496 45 1 3.2851 -0.9408 6.1490 46 1 1.8213 -0.4126 10.5868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345888768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:27 Heat of formation + Delta-G solvation = -54.838337 kcal Electronic energy + Delta-G solvation = -26479.249283 eV Core-core repulsion = 22688.140310 eV Total energy + Delta-G solvation = -3791.108972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.62610 -39.50447 -37.90390 -37.31878 -35.18792 -33.89361 -32.27191 -31.46096 -29.70534 -27.87510 -26.61140 -26.50905 -25.66371 -24.24927 -22.53326 -21.50304 -20.43398 -19.80882 -19.21301 -18.27669 -17.12435 -16.73776 -16.71299 -16.06945 -15.87175 -15.55294 -15.12027 -14.87604 -14.22083 -14.10463 -13.91570 -13.73080 -13.48609 -13.37877 -13.17943 -12.89764 -12.78681 -12.74192 -12.55341 -12.31883 -12.30918 -11.89051 -11.37364 -11.29464 -11.17565 -11.04275 -10.66150 -10.55168 -10.44314 -10.09366 -10.02476 -9.78552 -9.64613 -9.45539 -9.26070 -9.03503 -9.01757 -8.96558 -8.56419 -6.06976 -4.04563 0.09612 1.05560 1.46809 1.98738 2.49118 2.55448 2.86502 3.29016 3.29897 3.37413 3.40593 4.36540 4.42807 4.53001 4.60167 4.75974 4.85458 4.89189 5.05146 5.24970 5.25173 5.32676 5.45204 5.46388 5.53644 5.57729 5.74385 5.83288 5.88969 5.95944 6.03999 6.04851 6.10740 6.25239 6.36287 6.54736 6.59402 6.83754 6.97310 7.00746 7.09296 7.15169 7.31760 7.45430 7.75211 7.79150 8.10973 8.49580 8.96848 9.55458 11.05643 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025890 B = 0.002028 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.219965 B =13800.147011 C =14485.500702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 H 0.117 0.883 4 N -0.708 5.708 5 C 0.596 3.404 6 O -0.529 6.529 7 C -0.269 4.269 8 C -0.054 4.054 9 C -0.152 4.152 10 C -0.231 4.231 11 S 0.212 5.788 12 C 0.506 3.494 13 O -0.542 6.542 14 N -0.712 5.712 15 C 0.125 3.875 16 C -0.063 4.063 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.002 4.002 20 C -0.512 4.512 21 H 0.078 0.922 22 C 0.066 3.934 23 N -0.903 5.903 24 Si 0.875 3.125 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.266 1.266 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.408 0.592 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.402 0.598 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.018 0.982 45 H 0.014 0.986 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 -2.581 -29.604 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.135 0.865 4 N -0.361 5.361 5 C 0.382 3.618 6 O -0.407 6.407 7 C -0.389 4.389 8 C -0.088 4.088 9 C -0.183 4.183 10 C -0.369 4.369 11 S 0.479 5.521 12 C 0.291 3.709 13 O -0.420 6.420 14 N -0.363 5.363 15 C 0.003 3.997 16 C -0.064 4.064 17 C -0.187 4.187 18 C -0.187 4.187 19 C -0.039 4.039 20 C -0.549 4.549 21 H 0.096 0.904 22 C -0.135 4.135 23 N -0.542 5.542 24 Si 0.703 3.297 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.190 1.190 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.245 0.755 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.187 0.813 35 H 0.239 0.761 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.036 0.964 45 H 0.032 0.968 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.543 -3.672 -28.430 28.671 hybrid contribution 0.538 0.177 -0.808 0.986 sum 1.081 -3.495 -29.237 29.465 Atomic orbital electron populations 1.22149 0.92455 1.03406 1.03870 1.20823 0.95940 0.98198 0.83368 0.86493 1.45599 1.67428 1.14646 1.08465 1.16893 0.77230 0.86029 0.81660 1.90837 1.50461 1.14816 1.84634 1.24585 1.16422 0.98983 0.98922 1.20819 0.96264 1.01470 0.90213 1.20064 1.04115 0.92457 1.01645 1.25399 1.08269 1.02380 1.00813 1.83295 1.58324 1.05903 1.04561 1.20449 0.80663 0.84896 0.84932 1.90694 1.38203 1.26460 1.86650 1.46099 1.52784 1.31977 1.05469 1.21705 0.99050 0.96086 0.82908 1.20705 0.95920 0.95936 0.93822 1.21794 1.00510 0.95546 1.00898 1.21780 0.94684 1.01314 1.00878 1.19591 0.95922 0.95853 0.92576 1.21068 1.31999 1.13290 0.88590 0.90369 1.25007 0.95752 0.96719 0.96004 1.69900 1.45910 1.40480 0.97890 0.86853 0.81177 0.84045 0.77653 1.20380 1.21498 1.19021 0.90679 0.91557 0.90500 0.75499 0.82784 0.83622 0.81286 0.76147 0.91562 0.91612 0.94961 0.90758 0.93348 0.93349 0.90770 0.94970 0.96356 0.96807 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.38 37.16 0.35 -1.07 16 2 C 0.13 1.35 2.98 -69.08 -0.21 1.14 16 3 H 0.12 1.26 7.58 -51.93 -0.39 0.86 16 4 N -0.71 -7.79 4.95 -56.27 -0.28 -8.07 16 5 C 0.60 7.01 7.75 -12.90 -0.10 6.91 16 6 O -0.53 -7.56 16.50 5.19 0.09 -7.47 16 7 C -0.27 -2.62 6.45 -36.79 -0.24 -2.86 16 8 C -0.05 -0.46 10.01 -40.43 -0.40 -0.86 16 9 C -0.15 -0.99 10.15 -41.41 -0.42 -1.41 16 10 C -0.23 -1.41 10.92 29.18 0.32 -1.09 16 11 S 0.21 1.57 22.16 -107.50 -2.38 -0.81 16 12 C 0.51 6.61 7.22 -10.98 -0.08 6.53 16 13 O -0.54 -8.79 15.84 5.56 0.09 -8.70 16 14 N -0.71 -9.00 4.85 -60.30 -0.29 -9.30 16 15 C 0.13 1.95 4.56 -4.04 -0.02 1.94 16 16 C -0.06 -1.10 0.54 -154.51 -0.08 -1.18 16 17 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 18 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 19 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 20 C -0.51 -13.40 8.20 -34.44 -0.28 -13.69 16 21 H 0.08 2.17 5.92 -52.48 -0.31 1.86 16 22 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 23 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 24 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.57 7.56 -51.93 -0.39 0.18 16 31 H 0.41 4.33 6.90 -40.82 -0.28 4.05 16 32 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 33 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.40 4.28 5.58 -40.82 -0.23 4.05 16 36 H 0.07 1.08 8.14 -51.94 -0.42 0.66 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 39 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 43 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 44 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 45 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -32.23 385.93 -8.36 -40.59 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.75 Total: 5.20 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.75 Total: -7.69 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.20 Total: -43.46 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.17 Total: -16.17 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.38 Total: -0.81 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.23 -8.36 -40.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345888768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.252 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds