Wall clock time and date at job start Tue Mar 31 2020 21:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 5 5 C 1.34779 * 119.99965 * 85.00573 * 4 2 1 6 6 O 1.21701 * 119.99841 * 359.97438 * 5 4 2 7 7 C 1.46582 * 119.99962 * 179.97438 * 5 4 2 8 8 C 1.36646 * 125.45912 * 179.97438 * 7 5 4 9 9 C 1.37476 * 113.29668 * 180.02562 * 8 7 5 10 10 C 1.33812 * 115.10197 * 359.97438 * 9 8 7 11 11 S 1.70621 * 110.95576 * 359.72834 * 10 9 8 12 12 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 13 13 O 1.21280 * 120.00255 * 119.99948 * 12 2 1 14 14 N 1.34779 * 120.00378 * 299.99920 * 12 2 1 15 15 C 1.46497 * 120.00488 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47188 * 179.97438 * 15 14 12 17 17 C 1.53008 * 109.47280 * 300.00108 * 16 15 14 18 18 C 1.52996 * 109.46947 * 60.00215 * 16 15 14 19 19 C 1.53002 * 109.47143 * 180.02562 * 16 15 14 20 20 C 1.50703 * 109.47292 * 180.02562 * 19 16 15 21 21 H 1.08003 * 119.99742 * 359.97438 * 20 19 16 22 22 C 1.37873 * 119.99873 * 179.97438 * 20 19 16 23 23 N 1.31520 * 119.99883 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00328 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47102 * 89.99993 * 24 22 20 26 26 H 1.48494 * 109.47205 * 210.00004 * 24 22 20 27 27 H 1.48503 * 109.46783 * 329.99706 * 24 22 20 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 0.97003 * 119.99991 * 264.99646 * 4 2 1 32 32 H 1.08003 * 123.35087 * 359.97438 * 8 7 5 33 33 H 1.08000 * 122.44463 * 180.02562 * 9 8 7 34 34 H 1.07994 * 124.52295 * 180.02562 * 10 9 8 35 35 H 0.97003 * 119.99556 * 0.02562 * 14 12 2 36 36 H 1.08988 * 109.47204 * 300.00557 * 15 14 12 37 37 H 1.09002 * 109.46725 * 60.00113 * 15 14 12 38 38 H 1.09001 * 109.46630 * 60.00000 * 17 16 15 39 39 H 1.09004 * 109.46943 * 179.97438 * 17 16 15 40 40 H 1.08992 * 109.47290 * 300.00245 * 17 16 15 41 41 H 1.08996 * 109.47261 * 60.00229 * 18 16 15 42 42 H 1.09000 * 109.46870 * 179.97438 * 18 16 15 43 43 H 1.08992 * 109.47554 * 299.99696 * 18 16 15 44 44 H 1.09004 * 109.46930 * 300.00065 * 19 16 15 45 45 H 1.09002 * 109.47067 * 59.99982 * 19 16 15 46 46 H 0.96998 * 120.00300 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8574 1.1625 -2.4118 7 6 2.6363 -0.7091 -3.5538 8 6 2.8087 -0.1389 -4.7835 9 6 3.2806 -1.0181 -5.7292 10 6 3.4885 -2.2653 -5.2912 11 16 3.1025 -2.4026 -3.6349 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7068 -0.2500 2.4546 15 6 2.1945 -0.9409 3.6508 16 6 1.6852 -0.2191 4.9000 17 6 2.1963 1.2230 4.8999 18 6 0.1552 -0.2180 4.9000 19 6 2.1951 -0.9404 6.1493 20 6 1.6929 -0.2298 7.3798 21 1 1.0724 0.6486 7.2806 22 6 2.0256 -0.7012 8.6320 23 7 1.5877 -0.0808 9.7058 24 14 3.0994 -2.2200 8.8035 25 1 4.5271 -1.8142 8.8494 26 1 2.7477 -2.9360 10.0560 27 1 2.8769 -3.1173 7.6412 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.2491 -1.6318 -1.1525 32 1 2.5948 0.8990 -4.9920 33 1 3.4704 -0.7234 -6.7508 34 1 3.8565 -3.0755 -5.9031 35 1 1.1488 0.5385 2.5436 36 1 1.8309 -1.9683 3.6506 37 1 3.2846 -0.9413 3.6510 38 1 1.8333 1.7370 4.0099 39 1 1.8330 1.7373 5.7897 40 1 3.2862 1.2222 4.8998 41 1 -0.2089 -1.2453 4.9001 42 1 -0.2077 0.2958 5.7902 43 1 -0.2078 0.2961 4.0101 44 1 1.8313 -1.9679 6.1496 45 1 3.2851 -0.9408 6.1490 46 1 1.8213 -0.4126 10.5868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345888768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:26 Heat of formation + Delta-G solvation = -76.302265 kcal Electronic energy + Delta-G solvation = -26480.180028 eV Core-core repulsion = 22688.140310 eV Total energy + Delta-G solvation = -3792.039718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60032 -40.49365 -38.83610 -38.37383 -36.11976 -35.31409 -34.09020 -32.35842 -30.38670 -29.67549 -27.97468 -27.71964 -26.36266 -25.24535 -24.10622 -22.41072 -21.41745 -20.63529 -19.93203 -19.59564 -18.89449 -17.91636 -17.67400 -16.93123 -16.71249 -16.50992 -16.24458 -16.09704 -15.62536 -15.32590 -15.27650 -14.81875 -14.66873 -14.27958 -14.16403 -14.10887 -13.86055 -13.70503 -13.54802 -13.40407 -13.18424 -12.92380 -12.83540 -12.70690 -12.58756 -12.29177 -12.15570 -11.93388 -11.77308 -11.51022 -11.34599 -11.30960 -10.97964 -10.88901 -10.69989 -10.43828 -10.11937 -9.87651 -9.56393 -8.21701 -6.21829 -0.52066 0.47406 0.92891 1.36380 1.37158 1.39094 1.45779 1.48725 1.66459 2.09348 2.31301 2.39406 3.13736 3.48761 3.72770 3.91776 3.97345 4.04098 4.08495 4.14096 4.16904 4.34805 4.53799 4.57582 4.64618 4.71853 4.73999 4.79262 4.96216 5.00891 5.02086 5.11261 5.14283 5.15351 5.20661 5.29792 5.34287 5.35794 5.42598 5.44016 5.57236 5.70647 5.77694 6.24879 6.38083 6.43718 6.85436 6.93327 7.08026 7.40851 8.93780 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025890 B = 0.002028 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.219965 B =13800.147011 C =14485.500702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 H 0.120 0.880 4 N -0.707 5.707 5 C 0.595 3.405 6 O -0.563 6.563 7 C -0.305 4.305 8 C -0.053 4.053 9 C -0.159 4.159 10 C -0.217 4.217 11 S 0.219 5.781 12 C 0.511 3.489 13 O -0.573 6.573 14 N -0.701 5.701 15 C 0.138 3.862 16 C -0.059 4.059 17 C -0.127 4.127 18 C -0.125 4.125 19 C -0.004 4.004 20 C -0.501 4.501 21 H 0.052 0.948 22 C 0.003 3.997 23 N -0.951 5.951 24 Si 0.935 3.065 25 H -0.273 1.273 26 H -0.290 1.290 27 H -0.250 1.250 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.410 0.590 32 H 0.153 0.847 33 H 0.171 0.829 34 H 0.199 0.801 35 H 0.415 0.585 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.017 0.983 45 H 0.013 0.987 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 -3.726 -32.523 32.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 H 0.137 0.863 4 N -0.360 5.360 5 C 0.383 3.617 6 O -0.444 6.444 7 C -0.425 4.425 8 C -0.088 4.088 9 C -0.189 4.189 10 C -0.355 4.355 11 S 0.486 5.514 12 C 0.297 3.703 13 O -0.453 6.453 14 N -0.354 5.354 15 C 0.015 3.985 16 C -0.059 4.059 17 C -0.184 4.184 18 C -0.182 4.182 19 C -0.041 4.041 20 C -0.539 4.539 21 H 0.070 0.930 22 C -0.193 4.193 23 N -0.593 5.593 24 Si 0.760 3.240 25 H -0.199 1.199 26 H -0.216 1.216 27 H -0.173 1.173 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.247 0.753 32 H 0.170 0.830 33 H 0.189 0.811 34 H 0.216 0.784 35 H 0.253 0.747 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.035 0.965 45 H 0.031 0.969 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.953 -4.818 -31.365 31.747 hybrid contribution 0.400 0.558 0.013 0.686 sum 1.353 -4.261 -31.352 31.669 Atomic orbital electron populations 1.22138 0.90704 1.03798 1.04691 1.20850 0.97175 0.97749 0.82151 0.86251 1.45631 1.67235 1.14691 1.08433 1.17169 0.76592 0.85712 0.82226 1.90804 1.52199 1.16152 1.85243 1.24531 1.18776 1.00535 0.98654 1.21048 0.95565 1.01859 0.90328 1.20290 1.03963 0.92228 1.02452 1.25808 1.06481 1.03026 1.00141 1.83260 1.58112 1.04187 1.05812 1.20764 0.79839 0.84348 0.85353 1.90686 1.39577 1.27953 1.87073 1.45889 1.52777 1.32132 1.04579 1.21340 0.98477 0.95757 0.82959 1.20564 0.96643 0.95991 0.92703 1.21735 1.00276 0.95051 1.01323 1.21717 0.93735 1.01421 1.01371 1.19570 0.95750 0.95747 0.93078 1.21379 1.30250 1.12180 0.90108 0.92988 1.25858 0.97564 0.99922 0.95953 1.70045 1.48228 1.42605 0.98421 0.85887 0.79437 0.80737 0.77947 1.19861 1.21610 1.17331 0.90929 0.91364 0.88611 0.75292 0.82957 0.81138 0.78394 0.74688 0.91992 0.92419 0.91227 0.93636 0.93698 0.93434 0.93716 0.91037 0.96517 0.96890 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.38 71.98 0.68 -1.73 16 2 C 0.13 2.57 2.98 44.25 0.13 2.70 16 3 H 0.12 2.37 7.58 -2.39 -0.02 2.36 16 4 N -0.71 -14.99 4.95 -450.16 -2.23 -17.21 16 5 C 0.59 13.81 7.75 86.42 0.67 14.48 16 6 O -0.56 -16.05 16.50 -4.35 -0.07 -16.12 16 7 C -0.30 -5.74 6.45 24.08 0.16 -5.58 16 8 C -0.05 -0.85 10.01 21.72 0.22 -0.63 16 9 C -0.16 -1.70 10.15 21.08 0.21 -1.49 16 10 C -0.22 -2.04 10.92 66.81 0.73 -1.31 16 11 S 0.22 2.91 22.16 -56.49 -1.25 1.66 16 12 C 0.51 12.37 7.22 87.66 0.63 13.00 16 13 O -0.57 -17.77 15.84 -3.03 -0.05 -17.82 16 14 N -0.70 -15.92 4.85 -463.08 -2.25 -18.16 16 15 C 0.14 4.04 4.56 86.38 0.39 4.43 16 16 C -0.06 -1.96 0.54 -52.18 -0.03 -1.98 16 17 C -0.13 -4.04 8.05 71.98 0.58 -3.46 16 18 C -0.13 -3.89 8.05 71.98 0.58 -3.31 16 19 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 20 C -0.50 -26.70 8.20 25.60 0.21 -26.49 16 21 H 0.05 2.99 5.92 -2.91 -0.02 2.97 16 22 C 0.00 0.18 5.47 84.65 0.46 0.64 16 23 N -0.95 -58.24 13.96 21.45 0.30 -57.94 16 24 Si 0.93 43.84 27.47 68.60 1.88 45.72 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.11 7.56 -2.39 -0.02 1.09 16 31 H 0.41 8.39 6.90 -92.71 -0.64 7.75 16 32 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 34 H 0.20 0.66 8.06 -2.91 -0.02 0.63 16 35 H 0.41 7.35 5.58 -92.71 -0.52 6.84 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.67 6.86 -2.39 -0.02 1.66 16 39 H 0.04 1.72 6.62 -2.39 -0.02 1.70 16 40 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.04 1.66 6.62 -2.39 -0.02 1.64 16 43 H 0.07 1.63 6.86 -2.39 -0.02 1.62 16 44 H 0.02 0.73 7.20 -2.38 -0.02 0.71 16 45 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 46 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -71.57 385.93 1.85 -69.72 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.20 Total: 20.97 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 5.72 Total: -10.81 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -4.17 Total: -93.32 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.12 Total: -33.95 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -1.25 Total: 1.66 kcal Total: -71.57 1.85 -69.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345888768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.584 kcal (2) G-P(sol) polarization free energy of solvation -71.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds