Wall clock time and date at job start Tue Mar 31 2020 21:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.47104 * 2 1 4 4 C 1.46897 * 111.00203 * 299.33185 * 3 2 1 5 5 C 1.50700 * 109.47253 * 287.53323 * 4 3 2 6 6 O 1.21295 * 119.99803 * 4.31515 * 5 4 3 7 7 N 1.34774 * 120.00062 * 184.32091 * 5 4 3 8 8 C 1.39939 * 119.99817 * 183.78050 * 7 5 4 9 9 C 1.38679 * 120.11289 * 333.82192 * 8 7 5 10 10 C 1.38220 * 120.01910 * 179.97438 * 9 8 7 11 11 C 1.38400 * 120.24948 * 0.02562 * 10 9 8 12 12 C 1.38084 * 120.22956 * 359.97438 * 11 10 9 13 13 C 1.38992 * 119.97392 * 359.74361 * 12 11 10 14 14 S 1.76203 * 120.12516 * 180.25451 * 13 12 11 15 15 C 1.76205 * 99.99770 * 8.20297 * 14 13 12 16 16 H 1.07995 * 119.99819 * 4.84741 * 15 14 13 17 17 C 1.38682 * 120.00105 * 184.84410 * 15 14 13 18 18 N 1.31653 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47270 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47217 * 120.00055 * 19 17 15 22 22 H 1.48501 * 109.47436 * 239.99990 * 19 17 15 23 23 C 1.46901 * 110.99686 * 63.28460 * 3 2 1 24 24 C 1.52997 * 109.47093 * 75.58432 * 23 3 2 25 25 H 1.09002 * 109.47244 * 52.17306 * 24 23 3 26 26 C 1.53005 * 109.46942 * 172.16938 * 24 23 3 27 27 O 1.42898 * 109.47461 * 292.17077 * 24 23 3 28 28 H 1.09003 * 109.46890 * 185.09743 * 1 2 3 29 29 H 1.08992 * 109.46981 * 305.10374 * 1 2 3 30 30 H 1.09005 * 109.47230 * 65.10267 * 1 2 3 31 31 H 1.09002 * 109.47028 * 240.00298 * 2 1 3 32 32 H 1.09000 * 109.47193 * 120.00496 * 2 1 3 33 33 H 1.09006 * 109.47353 * 47.53056 * 4 3 2 34 34 H 1.08995 * 109.47219 * 167.52744 * 4 3 2 35 35 H 0.96994 * 120.00200 * 3.77350 * 7 5 4 36 36 H 1.08000 * 119.99544 * 359.95350 * 9 8 7 37 37 H 1.07999 * 119.87617 * 179.97438 * 10 9 8 38 38 H 1.08002 * 119.88451 * 179.97438 * 11 10 9 39 39 H 1.07999 * 120.01133 * 180.02562 * 12 11 10 40 40 H 0.96992 * 120.00458 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.46986 * 315.58648 * 23 3 2 42 42 H 1.08996 * 109.46961 * 195.58450 * 23 3 2 43 43 H 1.08992 * 109.47334 * 60.00110 * 26 24 23 44 44 H 1.09003 * 109.46776 * 180.02562 * 26 24 23 45 45 H 1.09003 * 109.47202 * 299.99679 * 26 24 23 46 46 H 0.96699 * 113.99986 * 300.00252 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5618 2.1053 -1.1956 5 6 2.3147 1.6062 -2.4018 6 8 3.0936 0.6829 -2.2914 7 7 2.1228 2.1859 -3.6033 8 6 2.7612 1.6724 -4.7378 9 6 3.9522 0.9736 -4.6096 10 6 4.5809 0.4669 -5.7314 11 6 4.0267 0.6543 -6.9857 12 6 2.8412 1.3485 -7.1253 13 6 2.1980 1.8570 -6.0030 14 16 0.6816 2.7377 -6.1759 15 6 0.3539 2.4502 -7.8831 16 1 0.9971 1.7969 -8.4539 17 6 -0.7301 3.0628 -8.4938 18 7 -1.5140 3.8596 -7.7982 19 14 -1.0772 2.7587 -10.3039 20 1 -0.0561 1.8318 -10.8548 21 1 -2.4256 2.1551 -10.4548 22 1 -1.0262 4.0468 -11.0411 23 6 1.6139 2.0868 1.2251 24 6 2.4832 1.6176 2.3934 25 1 3.5352 1.7081 2.1227 26 6 2.1965 2.4831 3.6221 27 8 2.1839 0.2526 2.6918 28 1 -0.3633 -1.0236 0.0913 29 1 -0.3633 0.5909 0.8407 30 1 -0.3634 0.4327 -0.9322 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.4947 1.9336 -1.3368 34 1 1.7445 3.1723 -1.0691 35 1 1.5421 2.9588 -3.6817 36 1 4.3888 0.8256 -3.6330 37 1 5.5085 -0.0766 -5.6289 38 1 4.5231 0.2561 -7.8583 39 1 2.4116 1.4923 -8.1057 40 1 -2.2719 4.2884 -8.2253 41 1 0.5679 1.8678 1.4397 42 1 1.7394 3.1606 1.0871 43 1 1.1446 2.3926 3.8928 44 1 2.8162 2.1491 4.4543 45 1 2.4249 3.5243 3.3945 46 1 1.2627 0.0974 2.9414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352196163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:30 Heat of formation + Delta-G solvation = -47.284218 kcal Electronic energy + Delta-G solvation = -26906.741031 eV Core-core repulsion = 23115.959630 eV Total energy + Delta-G solvation = -3790.781401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.29527 -38.98675 -37.66729 -36.18786 -34.29198 -32.76547 -31.91617 -30.58739 -30.26750 -29.24402 -27.50874 -25.89280 -25.22639 -22.89667 -22.33687 -21.83654 -20.70464 -19.72097 -18.33989 -17.05508 -16.80146 -16.74469 -16.33386 -16.04227 -15.56109 -15.43118 -15.07193 -14.59611 -14.43863 -14.14928 -13.80915 -13.73760 -13.44576 -13.00479 -12.90901 -12.80303 -12.58708 -12.45114 -12.32933 -12.07929 -11.76027 -11.66279 -11.55449 -11.31042 -11.25672 -11.23554 -11.05315 -10.83736 -10.43678 -10.10015 -10.02007 -9.77775 -9.55922 -9.15909 -8.80508 -8.63501 -8.32720 -7.63467 -6.55234 -6.51543 -4.24610 1.89507 2.12741 2.93330 3.01288 3.07769 3.15564 3.19107 3.36546 3.90703 3.97181 4.11232 4.48074 4.61559 4.76395 4.80124 4.86765 4.89370 5.03208 5.05236 5.09602 5.20267 5.24536 5.27988 5.29201 5.40653 5.44136 5.68622 5.71396 5.72998 5.84513 5.92536 5.95336 5.98180 6.21610 6.26950 6.37369 6.61773 6.80160 6.93263 6.96001 6.98208 7.15910 7.25592 7.38204 7.43892 7.73217 7.83880 8.12377 8.47553 8.94578 10.53032 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.002681 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.655810 B =10439.433681 C =11575.565873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.032 3.968 3 N -0.510 5.510 4 C 0.027 3.973 5 C 0.513 3.487 6 O -0.509 6.509 7 N -0.658 5.658 8 C 0.127 3.873 9 C -0.115 4.115 10 C -0.147 4.147 11 C -0.119 4.119 12 C -0.128 4.128 13 C -0.107 4.107 14 S 0.025 5.975 15 C -0.541 4.541 16 H 0.095 0.905 17 C 0.076 3.924 18 N -0.866 5.866 19 Si 0.925 3.075 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.016 3.984 24 C 0.108 3.892 25 H 0.108 0.892 26 C -0.184 4.184 27 O -0.555 6.555 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.410 0.590 36 H 0.145 0.855 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.272 0.728 41 H 0.047 0.953 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -1.787 17.534 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.096 4.096 3 N -0.233 5.233 4 C -0.104 4.104 5 C 0.300 3.700 6 O -0.384 6.384 7 N -0.302 5.302 8 C 0.025 3.975 9 C -0.137 4.137 10 C -0.170 4.170 11 C -0.140 4.140 12 C -0.154 4.154 13 C -0.224 4.224 14 S 0.278 5.722 15 C -0.688 4.688 16 H 0.112 0.888 17 C -0.134 4.134 18 N -0.500 5.500 19 Si 0.750 3.250 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.112 4.112 24 C 0.049 3.951 25 H 0.125 0.875 26 C -0.242 4.242 27 O -0.360 6.360 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.246 0.754 36 H 0.162 0.838 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.155 0.845 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.601 -1.637 18.264 18.906 hybrid contribution -1.477 -0.131 -2.089 2.562 sum 3.124 -1.768 16.175 16.569 Atomic orbital electron populations 1.22475 0.99037 1.02408 1.01486 1.22633 0.91880 0.89366 1.05677 1.61834 1.59341 1.02523 0.99590 1.22077 0.98600 0.99655 0.90048 1.20508 0.82939 0.82874 0.83697 1.90592 1.35004 1.28366 1.84465 1.43383 1.47941 1.32677 1.06245 1.17227 0.93750 1.02047 0.84474 1.21332 0.93438 0.98860 1.00022 1.20803 1.00468 1.03322 0.92417 1.20974 0.96331 0.99819 0.96873 1.21262 0.95672 0.99865 0.98615 1.22462 1.02164 1.03898 0.93908 1.83011 1.14517 1.59176 1.15464 1.23271 1.16722 1.34228 0.94583 0.88779 1.25087 0.94733 0.93723 0.99812 1.70000 1.15470 1.27740 1.36821 0.85998 0.78637 0.78520 0.81832 1.19138 1.20301 1.20259 1.22990 0.97986 0.99064 0.91188 1.21949 1.00608 0.81025 0.91501 0.87463 1.22480 1.02085 1.00814 0.98838 1.86631 1.32757 1.26564 1.90076 0.91865 0.92857 0.92642 0.89373 0.87851 0.90772 0.88118 0.75395 0.83809 0.87045 0.87193 0.84526 0.91781 0.93531 0.90073 0.92491 0.91599 0.91446 0.78468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.93 9.28 37.16 0.34 -1.58 16 2 C 0.03 0.37 5.54 -3.82 -0.02 0.35 16 3 N -0.51 -5.78 4.29 -236.07 -1.01 -6.79 16 4 C 0.03 0.32 5.31 -4.98 -0.03 0.29 16 5 C 0.51 8.08 7.52 -10.99 -0.08 8.00 16 6 O -0.51 -9.37 11.62 5.54 0.06 -9.31 16 7 N -0.66 -11.18 5.15 -9.70 -0.05 -11.23 16 8 C 0.13 2.53 6.46 -83.44 -0.54 1.99 16 9 C -0.11 -2.19 8.78 -39.43 -0.35 -2.54 16 10 C -0.15 -2.60 10.04 -39.53 -0.40 -3.00 16 11 C -0.12 -2.19 10.03 -39.58 -0.40 -2.58 16 12 C -0.13 -2.71 9.21 -39.36 -0.36 -3.08 16 13 C -0.11 -2.35 6.11 -38.75 -0.24 -2.59 16 14 S 0.02 0.60 20.39 -107.50 -2.19 -1.59 16 15 C -0.54 -14.29 8.98 30.90 0.28 -14.01 16 16 H 0.09 2.41 5.00 -52.49 -0.26 2.15 16 17 C 0.08 2.01 5.49 -17.46 -0.10 1.91 16 18 N -0.87 -23.69 13.22 55.48 0.73 -22.96 16 19 Si 0.92 20.19 29.55 -169.99 -5.02 15.16 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 C 0.02 0.13 4.67 -3.82 -0.02 0.11 16 24 C 0.11 0.86 3.79 -26.73 -0.10 0.75 16 25 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 26 C -0.18 -1.06 9.53 37.16 0.35 -0.71 16 27 O -0.56 -4.82 10.50 -35.23 -0.37 -5.19 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.43 5.98 -51.93 -0.31 0.12 16 30 H 0.05 0.62 6.44 -51.93 -0.33 0.28 16 31 H 0.09 1.31 6.30 -51.93 -0.33 0.98 16 32 H 0.10 1.18 5.36 -51.93 -0.28 0.90 16 33 H 0.07 0.81 5.87 -51.93 -0.30 0.51 16 34 H 0.10 0.95 7.67 -51.93 -0.40 0.55 16 35 H 0.41 6.45 7.70 -40.82 -0.31 6.13 16 36 H 0.14 2.74 5.57 -52.49 -0.29 2.45 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.14 2.99 5.06 -52.49 -0.27 2.72 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.05 0.34 5.72 -51.93 -0.30 0.04 16 42 H 0.08 0.58 7.63 -51.93 -0.40 0.19 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.37 2.00 9.05 45.56 0.41 2.41 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -30.99 375.29 -9.31 -40.30 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -5.46 Total: 12.63 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -1.65 Total: -16.68 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: -0.33 Total: -40.98 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.31 Total: -14.50 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.19 Total: -1.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.99 -9.31 -40.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352196163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.984 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds