Wall clock time and date at job start Tue Mar 31 2020 21:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.47104 * 2 1 4 4 C 1.46897 * 111.00203 * 299.33185 * 3 2 1 5 5 C 1.50700 * 109.47253 * 287.53323 * 4 3 2 6 6 O 1.21295 * 119.99803 * 4.31515 * 5 4 3 7 7 N 1.34774 * 120.00062 * 184.32091 * 5 4 3 8 8 C 1.39939 * 119.99817 * 183.78050 * 7 5 4 9 9 C 1.38679 * 120.11289 * 333.82192 * 8 7 5 10 10 C 1.38220 * 120.01910 * 179.97438 * 9 8 7 11 11 C 1.38400 * 120.24948 * 0.02562 * 10 9 8 12 12 C 1.38084 * 120.22956 * 359.97438 * 11 10 9 13 13 C 1.38992 * 119.97392 * 359.74361 * 12 11 10 14 14 S 1.76203 * 120.12516 * 180.25451 * 13 12 11 15 15 C 1.76205 * 99.99770 * 8.20297 * 14 13 12 16 16 H 1.07995 * 119.99819 * 4.84741 * 15 14 13 17 17 C 1.38682 * 120.00105 * 184.84410 * 15 14 13 18 18 N 1.31653 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00105 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47270 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47217 * 120.00055 * 19 17 15 22 22 H 1.48501 * 109.47436 * 239.99990 * 19 17 15 23 23 C 1.46901 * 110.99686 * 63.28460 * 3 2 1 24 24 C 1.52997 * 109.47093 * 75.58432 * 23 3 2 25 25 H 1.09002 * 109.47244 * 52.17306 * 24 23 3 26 26 C 1.53005 * 109.46942 * 172.16938 * 24 23 3 27 27 O 1.42898 * 109.47461 * 292.17077 * 24 23 3 28 28 H 1.09003 * 109.46890 * 185.09743 * 1 2 3 29 29 H 1.08992 * 109.46981 * 305.10374 * 1 2 3 30 30 H 1.09005 * 109.47230 * 65.10267 * 1 2 3 31 31 H 1.09002 * 109.47028 * 240.00298 * 2 1 3 32 32 H 1.09000 * 109.47193 * 120.00496 * 2 1 3 33 33 H 1.09006 * 109.47353 * 47.53056 * 4 3 2 34 34 H 1.08995 * 109.47219 * 167.52744 * 4 3 2 35 35 H 0.96994 * 120.00200 * 3.77350 * 7 5 4 36 36 H 1.08000 * 119.99544 * 359.95350 * 9 8 7 37 37 H 1.07999 * 119.87617 * 179.97438 * 10 9 8 38 38 H 1.08002 * 119.88451 * 179.97438 * 11 10 9 39 39 H 1.07999 * 120.01133 * 180.02562 * 12 11 10 40 40 H 0.96992 * 120.00458 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.46986 * 315.58648 * 23 3 2 42 42 H 1.08996 * 109.46961 * 195.58450 * 23 3 2 43 43 H 1.08992 * 109.47334 * 60.00110 * 26 24 23 44 44 H 1.09003 * 109.46776 * 180.02562 * 26 24 23 45 45 H 1.09003 * 109.47202 * 299.99679 * 26 24 23 46 46 H 0.96699 * 113.99986 * 300.00252 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5618 2.1053 -1.1956 5 6 2.3147 1.6062 -2.4018 6 8 3.0936 0.6829 -2.2914 7 7 2.1228 2.1859 -3.6033 8 6 2.7612 1.6724 -4.7378 9 6 3.9522 0.9736 -4.6096 10 6 4.5809 0.4669 -5.7314 11 6 4.0267 0.6543 -6.9857 12 6 2.8412 1.3485 -7.1253 13 6 2.1980 1.8570 -6.0030 14 16 0.6816 2.7377 -6.1759 15 6 0.3539 2.4502 -7.8831 16 1 0.9971 1.7969 -8.4539 17 6 -0.7301 3.0628 -8.4938 18 7 -1.5140 3.8596 -7.7982 19 14 -1.0772 2.7587 -10.3039 20 1 -0.0561 1.8318 -10.8548 21 1 -2.4256 2.1551 -10.4548 22 1 -1.0262 4.0468 -11.0411 23 6 1.6139 2.0868 1.2251 24 6 2.4832 1.6176 2.3934 25 1 3.5352 1.7081 2.1227 26 6 2.1965 2.4831 3.6221 27 8 2.1839 0.2526 2.6918 28 1 -0.3633 -1.0236 0.0913 29 1 -0.3633 0.5909 0.8407 30 1 -0.3634 0.4327 -0.9322 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 0.4947 1.9336 -1.3368 34 1 1.7445 3.1723 -1.0691 35 1 1.5421 2.9588 -3.6817 36 1 4.3888 0.8256 -3.6330 37 1 5.5085 -0.0766 -5.6289 38 1 4.5231 0.2561 -7.8583 39 1 2.4116 1.4923 -8.1057 40 1 -2.2719 4.2884 -8.2253 41 1 0.5679 1.8678 1.4397 42 1 1.7394 3.1606 1.0871 43 1 1.1446 2.3926 3.8928 44 1 2.8162 2.1491 4.4543 45 1 2.4249 3.5243 3.3945 46 1 1.2627 0.0974 2.9414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352196163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:29 Heat of formation + Delta-G solvation = -68.846205 kcal Electronic energy + Delta-G solvation = -26907.676029 eV Core-core repulsion = 23115.959630 eV Total energy + Delta-G solvation = -3791.716399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57142 -39.95481 -38.94692 -37.03219 -35.70606 -34.72614 -32.55001 -31.89296 -31.58714 -30.38464 -28.46445 -27.85378 -26.02905 -24.06908 -23.73496 -22.94649 -21.70149 -20.92009 -20.09950 -18.35210 -18.17246 -17.57456 -17.49963 -17.18556 -16.99657 -16.53904 -16.33103 -15.69225 -15.62378 -15.47978 -14.96040 -14.86202 -14.62887 -14.56376 -14.30044 -13.91382 -13.59311 -13.38109 -13.30307 -13.03648 -12.99391 -12.86375 -12.84037 -12.81556 -12.43143 -12.34744 -12.13204 -11.95908 -11.66053 -11.54917 -11.40165 -11.32159 -10.86791 -10.66075 -10.43043 -10.31014 -9.21722 -9.13005 -8.50141 -8.33986 -6.23316 0.38706 0.54615 1.26830 1.36704 1.45252 1.58821 1.65682 2.02195 2.17189 2.85757 2.98338 2.98438 3.16860 3.55277 3.71287 3.97277 4.07233 4.11176 4.14734 4.27399 4.31245 4.36327 4.39564 4.47029 4.50367 4.54437 4.65690 4.67809 4.70665 4.72288 4.93705 5.05409 5.09516 5.14240 5.24975 5.32465 5.34250 5.44304 5.47758 5.49479 5.65773 5.72953 5.97799 6.12606 6.16805 6.23097 6.50607 6.92302 6.95681 7.17132 8.59029 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.002681 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.655810 B =10439.433681 C =11575.565873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.038 3.962 3 N -0.526 5.526 4 C 0.034 3.966 5 C 0.511 3.489 6 O -0.537 6.537 7 N -0.659 5.659 8 C 0.128 3.872 9 C -0.127 4.127 10 C -0.131 4.131 11 C -0.118 4.118 12 C -0.142 4.142 13 C -0.129 4.129 14 S -0.013 6.013 15 C -0.561 4.561 16 H 0.094 0.906 17 C 0.027 3.973 18 N -0.901 5.901 19 Si 0.991 3.009 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.270 1.270 23 C 0.018 3.982 24 C 0.111 3.889 25 H 0.086 0.914 26 C -0.176 4.176 27 O -0.573 6.573 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.415 0.585 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.276 0.724 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 -1.986 18.319 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.090 4.090 3 N -0.250 5.250 4 C -0.097 4.097 5 C 0.299 3.701 6 O -0.413 6.413 7 N -0.304 5.304 8 C 0.026 3.974 9 C -0.148 4.148 10 C -0.153 4.153 11 C -0.139 4.139 12 C -0.168 4.168 13 C -0.246 4.246 14 S 0.238 5.762 15 C -0.708 4.708 16 H 0.112 0.888 17 C -0.180 4.180 18 N -0.536 5.536 19 Si 0.813 3.187 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.195 1.195 23 C -0.109 4.109 24 C 0.051 3.949 25 H 0.104 0.896 26 C -0.234 4.234 27 O -0.381 6.381 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.251 0.749 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.141 0.859 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 5.063 -1.848 19.089 19.835 hybrid contribution -1.445 -0.173 -2.203 2.640 sum 3.618 -2.021 16.886 17.387 Atomic orbital electron populations 1.22397 0.97519 1.03051 1.01649 1.22468 0.93041 0.89597 1.03860 1.61787 1.60094 1.02531 1.00547 1.22095 0.98232 1.00922 0.88407 1.21318 0.82493 0.82127 0.84120 1.90570 1.36373 1.29531 1.84856 1.43502 1.47886 1.32917 1.06088 1.17434 0.93879 1.01355 0.84735 1.21525 0.93353 0.99209 1.00759 1.21254 1.01025 1.01508 0.91538 1.21276 0.95229 0.98902 0.98465 1.21350 0.96923 1.00664 0.97858 1.22426 1.01681 1.05272 0.95200 1.82836 1.17171 1.61198 1.15009 1.23593 1.17116 1.34470 0.95603 0.88848 1.25994 0.94405 0.93405 1.04148 1.70094 1.16113 1.28803 1.38597 0.84997 0.78543 0.78635 0.76499 1.18578 1.19733 1.19510 1.23081 0.98773 0.99517 0.89571 1.21883 0.99408 0.81192 0.92385 0.89638 1.22390 1.02868 1.00647 0.97466 1.86590 1.34184 1.27126 1.90188 0.91463 0.90536 0.94068 0.93153 0.87608 0.89778 0.85406 0.74858 0.83679 0.83448 0.83870 0.85853 0.91476 0.91989 0.88616 0.91133 0.91977 0.90656 0.76831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.46 9.28 71.98 0.67 -2.79 16 2 C 0.04 0.87 5.54 86.30 0.48 1.35 16 3 N -0.53 -11.32 4.29 -900.80 -3.87 -15.19 16 4 C 0.03 0.76 5.31 85.56 0.45 1.21 16 5 C 0.51 16.05 7.52 87.66 0.66 16.71 16 6 O -0.54 -19.92 11.62 -3.08 -0.04 -19.96 16 7 N -0.66 -22.62 5.15 -302.99 -1.56 -24.18 16 8 C 0.13 5.14 6.46 38.31 0.25 5.38 16 9 C -0.13 -4.73 8.78 22.37 0.20 -4.53 16 10 C -0.13 -4.34 10.04 22.30 0.22 -4.11 16 11 C -0.12 -4.12 10.03 22.27 0.22 -3.89 16 12 C -0.14 -6.05 9.21 22.41 0.21 -5.84 16 13 C -0.13 -5.78 6.11 22.81 0.14 -5.64 16 14 S -0.01 -0.65 20.39 -56.49 -1.15 -1.80 16 15 C -0.56 -30.38 8.98 67.93 0.61 -29.77 16 16 H 0.09 4.92 5.00 -2.91 -0.01 4.90 16 17 C 0.03 1.42 5.49 84.83 0.47 1.88 16 18 N -0.90 -50.25 13.22 21.63 0.29 -49.96 16 19 Si 0.99 41.64 29.55 68.60 2.03 43.67 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 C 0.02 0.25 4.67 86.30 0.40 0.65 16 24 C 0.11 1.57 3.79 30.59 0.12 1.69 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 C -0.18 -1.62 9.53 71.98 0.69 -0.93 16 27 O -0.57 -9.15 10.50 -148.98 -1.56 -10.71 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.04 5.98 -2.39 -0.01 1.03 16 30 H 0.04 0.88 6.44 -2.38 -0.02 0.86 16 31 H 0.05 1.54 6.30 -2.39 -0.02 1.52 16 32 H 0.11 2.36 5.36 -2.39 -0.01 2.35 16 33 H 0.08 1.74 5.87 -2.38 -0.01 1.73 16 34 H 0.13 2.14 7.67 -2.39 -0.02 2.12 16 35 H 0.41 13.30 7.70 -92.71 -0.71 12.58 16 36 H 0.15 5.44 5.57 -2.91 -0.02 5.42 16 37 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 38 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 39 H 0.12 5.51 5.06 -2.91 -0.01 5.50 16 40 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.06 0.70 5.72 -2.39 -0.01 0.68 16 42 H 0.10 1.08 7.63 -2.39 -0.02 1.07 16 43 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.38 3.37 9.05 -74.06 -0.67 2.70 16 Total: -1.00 -68.79 375.29 -0.43 -69.22 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.34 Total: 37.55 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: 5.78 Total: -28.64 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -5.14 Total: -89.33 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -1.60 Total: -30.67 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -1.15 Total: -1.80 kcal Total: -68.79 -0.43 -69.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352196163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.373 kcal (2) G-P(sol) polarization free energy of solvation -68.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds