Wall clock time and date at job start Tue Mar 31 2020 21:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46903 * 109.46736 * 2 1 4 4 C 1.46904 * 110.99468 * 195.65438 * 3 2 1 5 5 C 1.50701 * 109.47189 * 66.04752 * 4 3 2 6 6 O 1.21292 * 119.99637 * 359.97438 * 5 4 3 7 7 N 1.34769 * 119.99959 * 179.97438 * 5 4 3 8 8 C 1.39934 * 120.00390 * 185.21237 * 7 5 4 9 9 C 1.38690 * 120.11162 * 24.39921 * 8 7 5 10 10 C 1.38215 * 120.02067 * 180.02562 * 9 8 7 11 11 C 1.38393 * 120.24866 * 359.95558 * 10 9 8 12 12 C 1.38080 * 120.23431 * 0.02562 * 11 10 9 13 13 C 1.38997 * 119.97052 * 0.02802 * 12 11 10 14 14 S 1.76203 * 120.12221 * 179.97438 * 13 12 11 15 15 C 1.76209 * 99.99977 * 7.27270 * 14 13 12 16 16 H 1.07995 * 119.99635 * 5.61962 * 15 14 13 17 17 C 1.38682 * 119.99881 * 185.62351 * 15 14 13 18 18 N 1.31648 * 120.00390 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99608 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47538 * 59.99884 * 19 17 15 21 21 H 1.48506 * 109.46795 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47133 * 299.99437 * 19 17 15 23 23 C 1.46903 * 111.00045 * 71.70429 * 3 2 1 24 24 C 1.52995 * 109.46951 * 190.09039 * 23 3 2 25 25 H 1.09001 * 109.46852 * 304.82514 * 24 23 3 26 26 C 1.53007 * 109.47168 * 184.82996 * 24 23 3 27 27 O 1.42897 * 109.47437 * 64.82744 * 24 23 3 28 28 H 1.09004 * 109.47149 * 184.87884 * 1 2 3 29 29 H 1.08999 * 109.47338 * 304.87728 * 1 2 3 30 30 H 1.08997 * 109.47256 * 64.87993 * 1 2 3 31 31 H 1.08993 * 109.47005 * 239.99933 * 2 1 3 32 32 H 1.08994 * 109.47055 * 119.99775 * 2 1 3 33 33 H 1.08997 * 109.47392 * 306.04365 * 4 3 2 34 34 H 1.09003 * 109.46562 * 186.04604 * 4 3 2 35 35 H 0.97004 * 120.00467 * 5.21492 * 7 5 4 36 36 H 1.07997 * 119.98866 * 0.02562 * 9 8 7 37 37 H 1.07998 * 119.87309 * 179.97438 * 10 9 8 38 38 H 1.08010 * 119.88545 * 179.74305 * 11 10 9 39 39 H 1.07998 * 120.01717 * 179.97438 * 12 11 10 40 40 H 0.97004 * 120.00180 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.46757 * 310.08908 * 23 3 2 42 42 H 1.08997 * 109.46842 * 70.08514 * 23 3 2 43 43 H 1.09001 * 109.46646 * 300.00042 * 26 24 23 44 44 H 1.09005 * 109.46776 * 59.99381 * 26 24 23 45 45 H 1.09001 * 109.47056 * 179.97438 * 26 24 23 46 46 H 0.96698 * 114.00212 * 185.02798 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4402 1.4412 -0.3701 5 6 3.6037 1.0031 -1.8027 6 8 2.6325 0.6758 -2.4514 7 7 4.8291 0.9749 -2.3630 8 6 4.9703 0.6739 -3.7223 9 6 3.9174 0.8963 -4.5972 10 6 4.0587 0.5978 -5.9393 11 6 5.2491 0.0775 -6.4162 12 6 6.3042 -0.1477 -5.5544 13 6 6.1720 0.1480 -4.2027 14 16 7.5157 -0.1384 -3.0994 15 6 8.7738 -0.5705 -4.2550 16 1 8.5799 -0.5014 -5.3151 17 6 10.0128 -0.9993 -3.8030 18 7 10.2492 -1.0831 -2.5107 19 14 11.3467 -1.4566 -5.0282 20 1 11.6623 -0.2807 -5.8784 21 1 12.5675 -1.8792 -4.2958 22 1 10.8711 -2.5730 -5.8840 23 6 1.7892 2.0249 1.3021 24 6 2.0754 3.5238 1.1916 25 1 3.0850 3.6735 0.8090 26 6 1.9525 4.1697 2.5731 27 8 1.1341 4.1240 0.2996 28 1 -0.3634 -1.0240 0.0874 29 1 -0.3634 0.5876 0.8431 30 1 -0.3633 0.4362 -0.9304 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.0115 0.7786 0.2800 34 1 3.8045 2.4624 -0.2586 35 1 5.6134 1.1633 -1.8241 36 1 2.9868 1.3028 -4.2296 37 1 3.2371 0.7715 -6.6184 38 1 5.3517 -0.1576 -7.4654 39 1 7.2315 -0.5543 -5.9303 40 1 11.1160 -1.3827 -2.1946 41 1 0.7523 1.8742 1.6025 42 1 2.4510 1.5824 2.0465 43 1 0.9429 4.0199 2.9557 44 1 2.6706 3.7118 3.2535 45 1 2.1569 5.2375 2.4944 46 1 1.3023 5.0594 0.1214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352196164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:33 Heat of formation + Delta-G solvation = -48.977612 kcal Electronic energy + Delta-G solvation = -26899.162505 eV Core-core repulsion = 23108.307673 eV Total energy + Delta-G solvation = -3790.854832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.27900 -38.67935 -37.58981 -36.23624 -34.30535 -32.76764 -31.87614 -31.01351 -30.29172 -29.21076 -27.43672 -25.89510 -25.13334 -22.50025 -22.10178 -21.83548 -20.78607 -19.83208 -18.38503 -17.74807 -16.94457 -16.76595 -16.06590 -15.69378 -15.59585 -15.13286 -15.09622 -14.63664 -14.16513 -14.07025 -13.89741 -13.57661 -13.37669 -13.07611 -12.92356 -12.80444 -12.76751 -12.45781 -12.21923 -12.07451 -11.73693 -11.69895 -11.66812 -11.32910 -11.21860 -11.10238 -10.84980 -10.75231 -10.39927 -10.12479 -10.06802 -9.83199 -9.54420 -9.22814 -8.79077 -8.65782 -8.36631 -7.61867 -6.55562 -6.50973 -4.25084 1.88449 2.11320 2.93616 3.00232 3.10671 3.14218 3.17863 3.35905 3.85066 3.97248 4.02500 4.48585 4.61923 4.72487 4.82007 4.86489 4.89209 5.05769 5.08439 5.12050 5.22392 5.24999 5.39516 5.46441 5.54355 5.56765 5.62123 5.67775 5.70955 5.77094 5.89936 5.92125 6.06658 6.22226 6.25627 6.29640 6.60440 6.80495 6.92847 6.94251 6.97659 7.15130 7.24774 7.43391 7.54400 7.71631 7.82601 8.11592 8.45321 8.94505 10.53193 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.002806 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.685185 B = 9975.088275 C =10998.065388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.046 3.954 3 N -0.509 5.509 4 C 0.031 3.969 5 C 0.512 3.488 6 O -0.506 6.506 7 N -0.659 5.659 8 C 0.129 3.871 9 C -0.113 4.113 10 C -0.145 4.145 11 C -0.120 4.120 12 C -0.127 4.127 13 C -0.108 4.108 14 S 0.027 5.973 15 C -0.544 4.544 16 H 0.094 0.906 17 C 0.078 3.922 18 N -0.866 5.866 19 Si 0.924 3.076 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.270 1.270 23 C 0.059 3.941 24 C 0.102 3.898 25 H 0.055 0.945 26 C -0.186 4.186 27 O -0.549 6.549 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.410 0.590 36 H 0.139 0.861 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.138 0.862 40 H 0.274 0.726 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.554 7.677 8.103 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.081 4.081 3 N -0.234 5.234 4 C -0.100 4.100 5 C 0.298 3.702 6 O -0.381 6.381 7 N -0.304 5.304 8 C 0.027 3.973 9 C -0.134 4.134 10 C -0.168 4.168 11 C -0.141 4.141 12 C -0.153 4.153 13 C -0.225 4.225 14 S 0.281 5.719 15 C -0.691 4.691 16 H 0.111 0.889 17 C -0.132 4.132 18 N -0.500 5.500 19 Si 0.749 3.251 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.195 1.195 23 C -0.069 4.069 24 C 0.042 3.958 25 H 0.073 0.927 26 C -0.244 4.244 27 O -0.354 6.354 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.247 0.753 36 H 0.156 0.844 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.155 0.845 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -14.353 7.076 8.880 18.301 hybrid contribution 2.041 -0.180 -1.098 2.325 sum -12.311 6.896 7.782 16.115 Atomic orbital electron populations 1.21690 0.94719 1.00800 1.02508 1.22238 0.96604 0.87899 1.01364 1.61607 1.14675 1.18259 1.28843 1.22028 0.91105 1.03119 0.93722 1.20454 0.82705 0.77926 0.89096 1.90630 1.38467 1.45830 1.63177 1.43439 1.09279 1.68498 1.09157 1.17201 0.94795 1.02656 0.82651 1.21139 0.98714 1.01094 0.92498 1.20772 0.97522 1.03570 0.94962 1.20965 0.93592 1.00671 0.98841 1.21266 0.99807 1.02114 0.92094 1.22441 0.98925 1.01736 0.99432 1.83037 0.99208 1.79372 1.10325 1.23194 0.98371 1.52604 0.94906 0.88868 1.25079 0.98217 0.93828 0.96121 1.69984 1.24056 1.43046 1.12904 0.86115 0.79452 0.79332 0.80185 1.19487 1.20602 1.19488 1.22224 1.02653 0.92326 0.89691 1.21820 0.92355 0.92695 0.88880 0.92740 1.22495 1.02912 1.01171 0.97788 1.86661 1.53602 1.28154 1.66940 0.92727 0.93181 0.91580 0.89010 0.95493 0.91655 0.87686 0.75307 0.84351 0.87025 0.87160 0.84501 0.91659 0.89326 0.93400 0.91743 0.91647 0.92113 0.78249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 10.04 37.16 0.37 -1.19 16 2 C 0.05 0.57 5.25 -3.82 -0.02 0.55 16 3 N -0.51 -6.23 4.15 -236.07 -0.98 -7.21 16 4 C 0.03 0.38 5.32 -4.97 -0.03 0.35 16 5 C 0.51 8.13 7.21 -10.99 -0.08 8.05 16 6 O -0.51 -9.39 11.60 5.55 0.06 -9.33 16 7 N -0.66 -11.22 5.17 -9.71 -0.05 -11.27 16 8 C 0.13 2.57 6.45 -83.45 -0.54 2.03 16 9 C -0.11 -2.15 8.72 -39.42 -0.34 -2.49 16 10 C -0.14 -2.56 10.04 -39.53 -0.40 -2.96 16 11 C -0.12 -2.19 10.03 -39.58 -0.40 -2.58 16 12 C -0.13 -2.67 9.22 -39.36 -0.36 -3.04 16 13 C -0.11 -2.37 6.11 -38.75 -0.24 -2.61 16 14 S 0.03 0.66 20.36 -107.50 -2.19 -1.53 16 15 C -0.54 -14.30 8.98 30.90 0.28 -14.03 16 16 H 0.09 2.36 4.99 -52.49 -0.26 2.10 16 17 C 0.08 2.03 5.49 -17.47 -0.10 1.94 16 18 N -0.87 -23.67 13.22 55.48 0.73 -22.94 16 19 Si 0.92 20.09 29.55 -169.99 -5.02 15.07 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 C 0.06 0.57 4.48 -3.82 -0.02 0.55 16 24 C 0.10 0.87 3.54 -26.73 -0.09 0.78 16 25 H 0.05 0.45 6.18 -51.93 -0.32 0.13 16 26 C -0.19 -1.19 9.56 37.16 0.36 -0.83 16 27 O -0.55 -5.60 13.25 -35.23 -0.47 -6.07 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.51 6.44 -51.93 -0.33 0.17 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 1.37 5.80 -51.93 -0.30 1.07 16 32 H 0.03 0.30 8.06 -51.93 -0.42 -0.12 16 33 H 0.07 0.70 8.12 -51.93 -0.42 0.27 16 34 H 0.11 1.07 6.01 -51.93 -0.31 0.76 16 35 H 0.41 6.48 7.64 -40.82 -0.31 6.17 16 36 H 0.14 2.64 5.75 -52.49 -0.30 2.34 16 37 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 39 H 0.14 2.97 5.04 -52.49 -0.26 2.71 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.09 0.87 6.31 -51.93 -0.33 0.54 16 42 H 0.05 0.39 8.12 -51.93 -0.42 -0.03 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.37 2.31 9.12 45.56 0.42 2.73 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -31.50 381.78 -9.44 -40.93 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.68 Total: 12.08 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -1.60 Total: -15.48 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -0.30 Total: -41.42 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.40 Total: -15.39 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.19 Total: -1.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.50 -9.44 -40.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352196164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.043 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds