Wall clock time and date at job start Tue Mar 31 2020 21:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46903 * 109.46736 * 2 1 4 4 C 1.46904 * 110.99468 * 195.65438 * 3 2 1 5 5 C 1.50701 * 109.47189 * 66.04752 * 4 3 2 6 6 O 1.21292 * 119.99637 * 359.97438 * 5 4 3 7 7 N 1.34769 * 119.99959 * 179.97438 * 5 4 3 8 8 C 1.39934 * 120.00390 * 185.21237 * 7 5 4 9 9 C 1.38690 * 120.11162 * 24.39921 * 8 7 5 10 10 C 1.38215 * 120.02067 * 180.02562 * 9 8 7 11 11 C 1.38393 * 120.24866 * 359.95558 * 10 9 8 12 12 C 1.38080 * 120.23431 * 0.02562 * 11 10 9 13 13 C 1.38997 * 119.97052 * 0.02802 * 12 11 10 14 14 S 1.76203 * 120.12221 * 179.97438 * 13 12 11 15 15 C 1.76209 * 99.99977 * 7.27270 * 14 13 12 16 16 H 1.07995 * 119.99635 * 5.61962 * 15 14 13 17 17 C 1.38682 * 119.99881 * 185.62351 * 15 14 13 18 18 N 1.31648 * 120.00390 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99608 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47538 * 59.99884 * 19 17 15 21 21 H 1.48506 * 109.46795 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47133 * 299.99437 * 19 17 15 23 23 C 1.46903 * 111.00045 * 71.70429 * 3 2 1 24 24 C 1.52995 * 109.46951 * 190.09039 * 23 3 2 25 25 H 1.09001 * 109.46852 * 304.82514 * 24 23 3 26 26 C 1.53007 * 109.47168 * 184.82996 * 24 23 3 27 27 O 1.42897 * 109.47437 * 64.82744 * 24 23 3 28 28 H 1.09004 * 109.47149 * 184.87884 * 1 2 3 29 29 H 1.08999 * 109.47338 * 304.87728 * 1 2 3 30 30 H 1.08997 * 109.47256 * 64.87993 * 1 2 3 31 31 H 1.08993 * 109.47005 * 239.99933 * 2 1 3 32 32 H 1.08994 * 109.47055 * 119.99775 * 2 1 3 33 33 H 1.08997 * 109.47392 * 306.04365 * 4 3 2 34 34 H 1.09003 * 109.46562 * 186.04604 * 4 3 2 35 35 H 0.97004 * 120.00467 * 5.21492 * 7 5 4 36 36 H 1.07997 * 119.98866 * 0.02562 * 9 8 7 37 37 H 1.07998 * 119.87309 * 179.97438 * 10 9 8 38 38 H 1.08010 * 119.88545 * 179.74305 * 11 10 9 39 39 H 1.07998 * 120.01717 * 179.97438 * 12 11 10 40 40 H 0.97004 * 120.00180 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.46757 * 310.08908 * 23 3 2 42 42 H 1.08997 * 109.46842 * 70.08514 * 23 3 2 43 43 H 1.09001 * 109.46646 * 300.00042 * 26 24 23 44 44 H 1.09005 * 109.46776 * 59.99381 * 26 24 23 45 45 H 1.09001 * 109.47056 * 179.97438 * 26 24 23 46 46 H 0.96698 * 114.00212 * 185.02798 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4402 1.4412 -0.3701 5 6 3.6037 1.0031 -1.8027 6 8 2.6325 0.6758 -2.4514 7 7 4.8291 0.9749 -2.3630 8 6 4.9703 0.6739 -3.7223 9 6 3.9174 0.8963 -4.5972 10 6 4.0587 0.5978 -5.9393 11 6 5.2491 0.0775 -6.4162 12 6 6.3042 -0.1477 -5.5544 13 6 6.1720 0.1480 -4.2027 14 16 7.5157 -0.1384 -3.0994 15 6 8.7738 -0.5705 -4.2550 16 1 8.5799 -0.5014 -5.3151 17 6 10.0128 -0.9993 -3.8030 18 7 10.2492 -1.0831 -2.5107 19 14 11.3467 -1.4566 -5.0282 20 1 11.6623 -0.2807 -5.8784 21 1 12.5675 -1.8792 -4.2958 22 1 10.8711 -2.5730 -5.8840 23 6 1.7892 2.0249 1.3021 24 6 2.0754 3.5238 1.1916 25 1 3.0850 3.6735 0.8090 26 6 1.9525 4.1697 2.5731 27 8 1.1341 4.1240 0.2996 28 1 -0.3634 -1.0240 0.0874 29 1 -0.3634 0.5876 0.8431 30 1 -0.3633 0.4362 -0.9304 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.0115 0.7786 0.2800 34 1 3.8045 2.4624 -0.2586 35 1 5.6134 1.1633 -1.8241 36 1 2.9868 1.3028 -4.2296 37 1 3.2371 0.7715 -6.6184 38 1 5.3517 -0.1576 -7.4654 39 1 7.2315 -0.5543 -5.9303 40 1 11.1160 -1.3827 -2.1946 41 1 0.7523 1.8742 1.6025 42 1 2.4510 1.5824 2.0465 43 1 0.9429 4.0199 2.9557 44 1 2.6706 3.7118 3.2535 45 1 2.1569 5.2375 2.4944 46 1 1.3023 5.0594 0.1214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352196164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:32 Heat of formation + Delta-G solvation = -71.079370 kcal Electronic energy + Delta-G solvation = -26900.120909 eV Core-core repulsion = 23108.307673 eV Total energy + Delta-G solvation = -3791.813236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58564 -39.76256 -38.78450 -37.12351 -35.71700 -34.72103 -32.63530 -32.01832 -31.83029 -30.46986 -28.38528 -27.84570 -26.01944 -23.96919 -23.51423 -22.66333 -21.83820 -21.02299 -20.11332 -18.71996 -18.24718 -18.00333 -17.56117 -17.02824 -16.74376 -16.52301 -16.27085 -15.78913 -15.52340 -15.23908 -14.92693 -14.72005 -14.57452 -14.48426 -14.38461 -14.01955 -13.64628 -13.38075 -13.35952 -13.06145 -12.98468 -12.89456 -12.82245 -12.78468 -12.61600 -12.52411 -12.12781 -11.85513 -11.60394 -11.47200 -11.38036 -11.36200 -10.77543 -10.65172 -10.57294 -10.35256 -9.27816 -9.13129 -8.49230 -8.33315 -6.23156 0.38706 0.53902 1.26911 1.40374 1.44704 1.58053 1.64156 1.99907 2.18363 2.86375 2.88938 3.00978 3.15106 3.41634 3.65181 3.95234 4.06191 4.11708 4.12585 4.18195 4.29257 4.30415 4.45446 4.51046 4.51801 4.61537 4.63544 4.68511 4.70490 4.72811 4.93694 5.00599 5.05016 5.06749 5.14978 5.31687 5.32819 5.36303 5.44103 5.48853 5.65631 5.72985 5.95054 6.10883 6.12712 6.22254 6.48810 6.96358 7.02307 7.14265 8.59529 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.002806 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.685185 B = 9975.088275 C =10998.065388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.046 3.954 3 N -0.526 5.526 4 C 0.038 3.962 5 C 0.511 3.489 6 O -0.533 6.533 7 N -0.660 5.660 8 C 0.130 3.870 9 C -0.124 4.124 10 C -0.129 4.129 11 C -0.119 4.119 12 C -0.141 4.141 13 C -0.130 4.130 14 S -0.013 6.013 15 C -0.563 4.563 16 H 0.095 0.905 17 C 0.028 3.972 18 N -0.901 5.901 19 Si 0.990 3.010 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.265 1.265 23 C 0.057 3.943 24 C 0.100 3.900 25 H 0.058 0.942 26 C -0.178 4.178 27 O -0.575 6.575 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.415 0.585 36 H 0.140 0.860 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.276 0.724 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.280 8.337 7.894 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.081 4.081 3 N -0.251 5.251 4 C -0.092 4.092 5 C 0.299 3.701 6 O -0.410 6.410 7 N -0.305 5.305 8 C 0.028 3.972 9 C -0.146 4.146 10 C -0.151 4.151 11 C -0.139 4.139 12 C -0.167 4.167 13 C -0.246 4.246 14 S 0.238 5.762 15 C -0.710 4.710 16 H 0.113 0.887 17 C -0.178 4.178 18 N -0.536 5.536 19 Si 0.812 3.188 20 H -0.188 1.188 21 H -0.199 1.199 22 H -0.189 1.189 23 C -0.070 4.070 24 C 0.041 3.959 25 H 0.076 0.924 26 C -0.236 4.236 27 O -0.382 6.382 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.144 0.856 35 H 0.252 0.748 36 H 0.157 0.843 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.142 0.858 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -15.124 7.768 8.669 19.085 hybrid contribution 2.056 -0.325 -1.079 2.344 sum -13.069 7.443 7.590 16.846 Atomic orbital electron populations 1.21631 0.94015 1.01618 1.01791 1.22171 0.97208 0.88193 1.00520 1.61594 1.14566 1.18183 1.30756 1.22040 0.91717 1.04524 0.90965 1.21192 0.81665 0.76768 0.90455 1.90610 1.39173 1.46929 1.64269 1.43542 1.10112 1.68478 1.08342 1.17405 0.94187 1.01493 0.84143 1.21321 0.98419 1.01600 0.93237 1.21224 0.98147 1.00922 0.94850 1.21271 0.92684 0.99833 1.00100 1.21360 1.00389 1.02555 0.92361 1.22400 0.98815 1.03896 0.99532 1.82880 1.00466 1.81219 1.11613 1.23542 0.99330 1.52695 0.95448 0.88728 1.25990 1.00324 0.93649 0.97885 1.70088 1.24716 1.44198 1.14612 0.85108 0.76626 0.79181 0.77895 1.18774 1.19910 1.18943 1.22336 1.02980 0.92994 0.88701 1.21898 0.92119 0.92069 0.89837 0.92391 1.22420 1.03025 1.01695 0.96494 1.86613 1.54411 1.29623 1.67544 0.91513 0.91966 0.93765 0.92024 0.94026 0.89924 0.85577 0.74785 0.84264 0.83428 0.83797 0.85758 0.91476 0.89551 0.91598 0.92069 0.90661 0.91123 0.76555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 10.04 71.98 0.72 -2.17 16 2 C 0.05 1.12 5.25 86.30 0.45 1.58 16 3 N -0.53 -12.27 4.15 -900.79 -3.74 -16.01 16 4 C 0.04 0.87 5.32 85.56 0.45 1.33 16 5 C 0.51 16.12 7.21 87.66 0.63 16.75 16 6 O -0.53 -19.86 11.60 -3.07 -0.04 -19.90 16 7 N -0.66 -22.61 5.17 -303.01 -1.57 -24.18 16 8 C 0.13 5.18 6.45 38.31 0.25 5.43 16 9 C -0.12 -4.59 8.72 22.37 0.20 -4.40 16 10 C -0.13 -4.24 10.04 22.30 0.22 -4.01 16 11 C -0.12 -4.08 10.03 22.27 0.22 -3.85 16 12 C -0.14 -5.94 9.22 22.41 0.21 -5.74 16 13 C -0.13 -5.78 6.11 22.81 0.14 -5.64 16 14 S -0.01 -0.63 20.36 -56.49 -1.15 -1.78 16 15 C -0.56 -30.33 8.98 67.93 0.61 -29.72 16 16 H 0.10 4.91 4.99 -2.91 -0.01 4.89 16 17 C 0.03 1.47 5.49 84.83 0.47 1.94 16 18 N -0.90 -50.24 13.22 21.63 0.29 -49.95 16 19 Si 0.99 41.36 29.55 68.60 2.03 43.38 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 23 C 0.06 0.99 4.48 86.30 0.39 1.37 16 24 C 0.10 1.52 3.54 30.59 0.11 1.62 16 25 H 0.06 0.83 6.18 -2.39 -0.01 0.81 16 26 C -0.18 -1.88 9.56 71.98 0.69 -1.19 16 27 O -0.57 -10.95 13.25 -148.98 -1.97 -12.93 16 28 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.06 1.19 6.44 -2.39 -0.02 1.17 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.87 5.80 -2.39 -0.01 1.85 16 32 H 0.04 0.86 8.06 -2.39 -0.02 0.85 16 33 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 34 H 0.13 2.34 6.01 -2.39 -0.01 2.33 16 35 H 0.41 13.34 7.64 -92.71 -0.71 12.63 16 36 H 0.14 5.19 5.75 -2.91 -0.02 5.18 16 37 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 38 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 39 H 0.12 5.49 5.04 -2.91 -0.01 5.47 16 40 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.09 1.54 6.31 -2.39 -0.02 1.52 16 42 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.39 4.31 9.12 -74.06 -0.68 3.64 16 Total: -1.00 -69.18 381.78 -0.75 -69.92 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.35 Total: 38.12 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 5.76 Total: -26.70 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -5.02 Total: -90.13 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -2.01 Total: -32.82 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -1.15 Total: -1.78 kcal Total: -69.18 -0.75 -69.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352196164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.155 kcal (2) G-P(sol) polarization free energy of solvation -69.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds