Wall clock time and date at job start Tue Mar 31 2020 21:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46496 * 109.46986 * 2 1 4 4 C 1.46502 * 119.99802 * 265.56186 * 3 2 1 5 5 C 1.50701 * 109.46697 * 269.99780 * 4 3 2 6 6 H 1.07995 * 120.00404 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00017 * 179.97438 * 5 4 3 8 8 N 1.31503 * 120.00519 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99752 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46643 * 89.99854 * 9 7 5 11 11 H 1.48497 * 109.47283 * 209.99846 * 9 7 5 12 12 H 1.48496 * 109.47172 * 330.00234 * 9 7 5 13 13 C 1.34775 * 120.00391 * 85.56330 * 3 2 1 14 14 O 1.21573 * 120.00798 * 174.87418 * 13 3 2 15 15 C 1.47677 * 119.99883 * 354.86862 * 13 3 2 16 16 C 1.41524 * 126.44537 * 175.08869 * 15 13 3 17 17 C 1.35349 * 105.55884 * 179.97438 * 16 15 13 18 18 C 1.50700 * 126.43694 * 180.02562 * 17 16 15 19 19 N 1.35854 * 107.12435 * 0.25920 * 17 16 15 20 20 C 1.40141 * 124.95871 * 179.73881 * 19 17 16 21 21 C 1.38984 * 119.99273 * 41.95762 * 20 19 17 22 22 C 1.38219 * 120.23595 * 180.02562 * 21 20 19 23 23 C 1.38013 * 120.22677 * 359.97378 * 22 21 20 24 24 C 1.39644 * 119.98554 * 0.02562 * 23 22 21 25 25 C 1.43198 * 120.11950 * 180.02562 * 24 23 22 26 26 N 6.75711 * 80.33247 * 150.60675 * 2 1 3 27 27 C 1.38566 * 119.99254 * 221.68067 * 20 19 17 28 28 N 1.28476 * 110.08089 * 359.55258 * 19 17 16 29 29 H 1.08998 * 109.46723 * 60.00153 * 1 2 3 30 30 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46724 * 299.99928 * 1 2 3 32 32 H 1.08995 * 109.46724 * 240.00072 * 2 1 3 33 33 H 1.08998 * 109.46723 * 119.99847 * 2 1 3 34 34 H 1.08992 * 109.47280 * 29.99642 * 4 3 2 35 35 H 1.08999 * 109.46949 * 150.00623 * 4 3 2 36 36 H 0.96996 * 120.00834 * 179.97438 * 8 7 5 37 37 H 1.08001 * 127.22243 * 0.02562 * 16 15 13 38 38 H 1.09004 * 109.47185 * 94.24247 * 18 17 16 39 39 H 1.08994 * 109.47399 * 334.23524 * 18 17 16 40 40 H 1.08999 * 109.47100 * 214.23599 * 18 17 16 41 41 H 1.08000 * 119.88371 * 359.97438 * 21 20 19 42 42 H 1.08000 * 119.88531 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.01083 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.11462 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3551 2.0390 -1.2650 5 6 3.8061 1.7924 -1.5886 6 1 4.4163 1.2042 -0.9194 7 6 4.3545 2.3170 -2.7399 8 7 5.6205 2.1014 -3.0227 9 14 3.2989 3.3339 -3.8980 10 1 3.3727 4.7647 -3.5072 11 1 3.7947 3.1743 -5.2886 12 1 1.8901 2.8712 -3.8186 13 6 2.1579 2.0467 1.1636 14 8 2.6502 3.1583 1.1731 15 6 1.7127 1.4257 2.4274 16 6 1.8806 1.9550 3.7291 17 6 1.3202 1.0493 4.5644 18 6 1.2383 1.1472 6.0659 19 7 0.8502 0.0330 3.7951 20 6 0.2018 -1.1097 4.2829 21 6 -0.7403 -0.9938 5.2981 22 6 -1.3824 -2.1175 5.7834 23 6 -1.0929 -3.3624 5.2627 24 6 -0.1479 -3.4896 4.2425 25 6 0.1544 -4.7799 3.6998 26 7 0.3954 -5.8037 3.2693 27 6 0.4960 -2.3541 3.7490 28 7 1.0834 0.2741 2.5549 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.7313 1.6348 -2.0621 35 1 2.1801 3.1111 -1.1748 36 1 6.0062 2.4701 -3.8327 37 1 2.3555 2.8866 3.9993 38 1 0.2820 1.5867 6.3498 39 1 2.0501 1.7745 6.4340 40 1 1.3234 0.1511 6.5002 41 1 -0.9709 -0.0224 5.7099 42 1 -2.1132 -2.0210 6.5727 43 1 -1.5970 -4.2380 5.6442 44 1 1.2242 -2.4454 2.9568 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356796336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:25 Heat of formation + Delta-G solvation = 123.134545 kcal Electronic energy + Delta-G solvation = -28473.069484 eV Core-core repulsion = 24586.526795 eV Total energy + Delta-G solvation = -3886.542689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.00382 -39.96825 -38.76728 -36.88585 -35.37156 -33.98673 -33.11315 -32.58472 -31.82785 -30.30493 -29.79363 -27.82576 -27.17038 -24.70245 -24.66017 -22.86221 -22.71319 -21.40453 -21.22024 -19.10605 -18.23775 -17.08235 -16.99052 -16.84754 -16.58858 -16.20639 -15.47493 -15.30454 -14.59332 -14.56418 -14.32546 -14.01242 -13.86427 -13.71641 -13.51827 -13.33152 -13.27690 -13.27316 -13.06079 -12.81237 -12.61532 -12.41366 -12.13767 -12.03889 -12.02327 -11.72689 -11.38193 -10.94758 -10.76807 -10.51260 -10.38700 -10.17133 -10.04321 -9.67256 -9.50965 -9.24282 -8.94088 -8.74941 -8.53864 -7.65943 -6.03310 -4.01749 0.04657 0.42133 1.70971 2.05040 2.17403 2.32173 2.42848 3.24223 3.32425 3.33351 3.39114 3.40802 3.78931 3.96806 4.13842 4.30218 4.34934 4.38324 4.44269 4.50627 4.72528 4.77993 4.89248 5.15126 5.17645 5.26024 5.34750 5.49310 5.50964 5.58264 5.59573 5.61446 5.63069 5.81629 5.87035 5.91499 5.96900 6.25155 6.33445 6.40777 6.62162 6.73614 6.87961 6.97456 7.02533 7.40338 7.65570 7.85630 8.29363 8.51622 8.94790 9.02483 9.56671 11.10202 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.003063 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.891570 B = 9140.276068 C =10370.698943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.111 3.889 3 N -0.576 5.576 4 C 0.217 3.783 5 C -0.526 4.526 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.588 3.412 14 O -0.528 6.528 15 C 0.017 3.983 16 C -0.169 4.169 17 C 0.009 3.991 18 C -0.085 4.085 19 N -0.254 5.254 20 C 0.143 3.857 21 C -0.090 4.090 22 C -0.101 4.101 23 C -0.068 4.068 24 C -0.008 4.008 25 C 0.251 3.749 26 N -0.402 5.402 27 C -0.055 4.055 28 N -0.250 5.250 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.166 0.834 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.547 -8.514 22.991 30.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.013 4.013 3 N -0.307 5.307 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.372 3.628 14 O -0.403 6.403 15 C -0.145 4.145 16 C -0.196 4.196 17 C -0.111 4.111 18 C -0.143 4.143 19 N -0.037 5.037 20 C 0.053 3.947 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.089 4.089 24 C -0.012 4.012 25 C -0.065 4.065 26 N -0.076 5.076 27 C -0.078 4.078 28 N -0.082 5.082 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.184 0.816 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.159 0.841 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.199 -10.408 21.541 29.464 hybrid contribution -0.100 1.521 -0.246 1.544 sum -17.299 -8.887 21.295 28.839 Atomic orbital electron populations 1.22102 0.96667 1.01147 1.01570 1.21556 0.93683 0.83103 1.02952 1.47823 1.62410 1.13577 1.06885 1.19710 0.96990 0.93696 0.79917 1.21327 0.93670 1.33992 1.07499 0.90675 1.24848 0.94868 0.95728 0.97538 1.69891 1.12181 1.45545 1.26042 0.86865 0.81086 0.81500 0.80350 1.19860 1.21102 1.19021 1.16862 0.79340 0.85129 0.81486 1.90780 1.44275 1.19642 1.85631 1.22449 1.02766 0.93135 0.96139 1.21600 1.05703 1.01789 0.90506 1.21547 1.03732 0.90155 0.95673 1.20437 1.03748 1.03314 0.86771 1.42787 1.42204 1.14717 1.04034 1.17224 0.95891 0.84080 0.97526 1.21379 0.93252 1.00758 0.95716 1.20967 0.99800 0.90838 1.00310 1.21330 0.94925 0.98840 0.93764 1.15712 1.00479 0.86135 0.98838 1.25494 0.94214 0.92784 0.94009 1.81327 1.07387 1.11237 1.07693 1.21098 0.98472 0.89172 0.99024 1.74073 1.17824 1.17892 0.98404 0.93224 0.92585 0.92390 0.90334 0.90166 0.94966 0.94562 0.92598 0.81628 0.90406 0.89352 0.90978 0.84010 0.83599 0.84101 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.64 37.16 0.36 -2.00 16 2 C 0.11 1.99 5.68 -4.04 -0.02 1.97 16 3 N -0.58 -12.75 2.46 -176.24 -0.43 -13.18 16 4 C 0.22 5.49 4.17 -5.19 -0.02 5.47 16 5 C -0.53 -15.53 9.94 -34.44 -0.34 -15.87 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 9 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.59 12.99 7.64 -12.41 -0.09 12.89 16 14 O -0.53 -13.51 16.56 5.30 0.09 -13.42 16 15 C 0.02 0.30 6.59 -82.75 -0.55 -0.24 16 16 C -0.17 -2.41 10.72 -39.36 -0.42 -2.84 16 17 C 0.01 0.10 6.73 -81.84 -0.55 -0.45 16 18 C -0.08 -0.51 8.74 36.01 0.31 -0.19 16 19 N -0.25 -2.95 3.44 -6.88 -0.02 -2.97 16 20 C 0.14 1.21 6.02 -83.66 -0.50 0.70 16 21 C -0.09 -0.46 8.45 -39.31 -0.33 -0.79 16 22 C -0.10 -0.31 10.02 -39.67 -0.40 -0.71 16 23 C -0.07 -0.27 9.75 -39.14 -0.38 -0.65 16 24 C -0.01 -0.05 5.73 -106.96 -0.61 -0.66 16 25 C 0.25 2.27 15.33 -22.46 -0.34 1.93 16 26 N -0.40 -4.73 18.54 41.85 0.78 -3.95 16 27 C -0.06 -0.46 9.45 -38.97 -0.37 -0.83 16 28 N -0.25 -3.71 6.55 33.42 0.22 -3.49 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.89 6.40 -51.93 -0.33 0.56 16 32 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 33 H 0.08 1.38 5.82 -51.93 -0.30 1.07 16 34 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 35 H 0.04 0.96 6.93 -51.93 -0.36 0.60 16 36 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 37 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.08 0.32 7.61 -51.93 -0.40 -0.08 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.34 7.40 -51.93 -0.38 -0.04 16 41 H 0.14 0.53 6.55 -52.49 -0.34 0.19 16 42 H 0.15 0.03 8.06 -52.49 -0.42 -0.39 16 43 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 44 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -37.23 378.71 -7.38 -44.61 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.45 Total: -2.90 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -4.37 Total: -0.21 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 1.31 Total: -51.01 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.09 Total: -13.42 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.23 -7.38 -44.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356796336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.746 kcal (2) G-P(sol) polarization free energy of solvation -37.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds