Wall clock time and date at job start Tue Mar 31 2020 21:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46496 * 109.46986 * 2 1 4 4 C 1.46502 * 119.99802 * 265.56186 * 3 2 1 5 5 C 1.50701 * 109.46697 * 269.99780 * 4 3 2 6 6 H 1.07995 * 120.00404 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00017 * 179.97438 * 5 4 3 8 8 N 1.31503 * 120.00519 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99752 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46643 * 89.99854 * 9 7 5 11 11 H 1.48497 * 109.47283 * 209.99846 * 9 7 5 12 12 H 1.48496 * 109.47172 * 330.00234 * 9 7 5 13 13 C 1.34775 * 120.00391 * 85.56330 * 3 2 1 14 14 O 1.21573 * 120.00798 * 174.87418 * 13 3 2 15 15 C 1.47677 * 119.99883 * 354.86862 * 13 3 2 16 16 C 1.41524 * 126.44537 * 175.08869 * 15 13 3 17 17 C 1.35349 * 105.55884 * 179.97438 * 16 15 13 18 18 C 1.50700 * 126.43694 * 180.02562 * 17 16 15 19 19 N 1.35854 * 107.12435 * 0.25920 * 17 16 15 20 20 C 1.40141 * 124.95871 * 179.73881 * 19 17 16 21 21 C 1.38984 * 119.99273 * 41.95762 * 20 19 17 22 22 C 1.38219 * 120.23595 * 180.02562 * 21 20 19 23 23 C 1.38013 * 120.22677 * 359.97378 * 22 21 20 24 24 C 1.39644 * 119.98554 * 0.02562 * 23 22 21 25 25 C 1.43198 * 120.11950 * 180.02562 * 24 23 22 26 26 N 6.75711 * 80.33247 * 150.60675 * 2 1 3 27 27 C 1.38566 * 119.99254 * 221.68067 * 20 19 17 28 28 N 1.28476 * 110.08089 * 359.55258 * 19 17 16 29 29 H 1.08998 * 109.46723 * 60.00153 * 1 2 3 30 30 H 1.08996 * 109.46657 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46724 * 299.99928 * 1 2 3 32 32 H 1.08995 * 109.46724 * 240.00072 * 2 1 3 33 33 H 1.08998 * 109.46723 * 119.99847 * 2 1 3 34 34 H 1.08992 * 109.47280 * 29.99642 * 4 3 2 35 35 H 1.08999 * 109.46949 * 150.00623 * 4 3 2 36 36 H 0.96996 * 120.00834 * 179.97438 * 8 7 5 37 37 H 1.08001 * 127.22243 * 0.02562 * 16 15 13 38 38 H 1.09004 * 109.47185 * 94.24247 * 18 17 16 39 39 H 1.08994 * 109.47399 * 334.23524 * 18 17 16 40 40 H 1.08999 * 109.47100 * 214.23599 * 18 17 16 41 41 H 1.08000 * 119.88371 * 359.97438 * 21 20 19 42 42 H 1.08000 * 119.88531 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.01083 * 180.02562 * 23 22 21 44 44 H 1.07995 * 120.11462 * 359.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3551 2.0390 -1.2650 5 6 3.8061 1.7924 -1.5886 6 1 4.4163 1.2042 -0.9194 7 6 4.3545 2.3170 -2.7399 8 7 5.6205 2.1014 -3.0227 9 14 3.2989 3.3339 -3.8980 10 1 3.3727 4.7647 -3.5072 11 1 3.7947 3.1743 -5.2886 12 1 1.8901 2.8712 -3.8186 13 6 2.1579 2.0467 1.1636 14 8 2.6502 3.1583 1.1731 15 6 1.7127 1.4257 2.4274 16 6 1.8806 1.9550 3.7291 17 6 1.3202 1.0493 4.5644 18 6 1.2383 1.1472 6.0659 19 7 0.8502 0.0330 3.7951 20 6 0.2018 -1.1097 4.2829 21 6 -0.7403 -0.9938 5.2981 22 6 -1.3824 -2.1175 5.7834 23 6 -1.0929 -3.3624 5.2627 24 6 -0.1479 -3.4896 4.2425 25 6 0.1544 -4.7799 3.6998 26 7 0.3954 -5.8037 3.2693 27 6 0.4960 -2.3541 3.7490 28 7 1.0834 0.2741 2.5549 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.7313 1.6348 -2.0621 35 1 2.1801 3.1111 -1.1748 36 1 6.0062 2.4701 -3.8327 37 1 2.3555 2.8866 3.9993 38 1 0.2820 1.5867 6.3498 39 1 2.0501 1.7745 6.4340 40 1 1.3234 0.1511 6.5002 41 1 -0.9709 -0.0224 5.7099 42 1 -2.1132 -2.0210 6.5727 43 1 -1.5970 -4.2380 5.6442 44 1 1.2242 -2.4454 2.9568 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356796336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:24 Heat of formation + Delta-G solvation = 99.343077 kcal Electronic energy + Delta-G solvation = -28474.101160 eV Core-core repulsion = 24586.526795 eV Total energy + Delta-G solvation = -3887.574365 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.99593 -40.75412 -40.21575 -37.64653 -37.11324 -35.07581 -34.58349 -33.83750 -32.36779 -31.94170 -30.71752 -29.55235 -27.99044 -26.04485 -25.20065 -24.44404 -23.90459 -22.58871 -22.16322 -20.02095 -19.64572 -19.12277 -17.94629 -17.62472 -17.46894 -17.29459 -17.04988 -16.40352 -16.10416 -15.63694 -15.21808 -15.12538 -15.00444 -14.82478 -14.64264 -14.47886 -14.34055 -14.09028 -13.95224 -13.80370 -13.77403 -13.49780 -13.36271 -13.22072 -13.16186 -12.67365 -12.59082 -12.53385 -12.43766 -12.06654 -11.98121 -11.76487 -11.64295 -11.09764 -10.86495 -10.84257 -10.13165 -9.90232 -9.65083 -9.40468 -8.35137 -6.41080 -0.44122 -0.14220 0.64637 1.11418 1.26046 1.32186 1.36645 1.45473 1.58511 1.81774 2.19850 2.30552 2.41422 2.68541 2.73926 2.98466 3.31136 3.66150 3.72451 3.81800 3.93160 4.03486 4.14681 4.24957 4.37540 4.41336 4.46361 4.57614 4.62641 4.73103 4.75383 4.81280 4.87007 4.92298 5.00456 5.02242 5.05195 5.11577 5.16386 5.22960 5.29401 5.39830 5.45459 5.58568 5.61809 6.00460 6.21369 6.34801 6.55742 6.59479 6.81732 7.16630 7.30709 8.82284 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.003063 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.891570 B = 9140.276068 C =10370.698943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.110 3.890 3 N -0.587 5.587 4 C 0.227 3.773 5 C -0.538 4.538 6 H 0.023 0.977 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.273 1.273 12 H -0.238 1.238 13 C 0.580 3.420 14 O -0.580 6.580 15 C -0.024 4.024 16 C -0.198 4.198 17 C 0.036 3.964 18 C -0.084 4.084 19 N -0.241 5.241 20 C 0.107 3.893 21 C -0.072 4.072 22 C -0.081 4.081 23 C -0.044 4.044 24 C -0.020 4.020 25 C 0.275 3.725 26 N -0.459 5.459 27 C -0.065 4.065 28 N -0.254 5.254 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.270 0.730 37 H 0.164 0.836 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.165 0.835 42 H 0.192 0.808 43 H 0.171 0.829 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.926 -9.200 26.109 35.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.013 4.013 3 N -0.317 5.317 4 C 0.105 3.895 5 C -0.577 4.577 6 H 0.042 0.958 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.773 3.227 10 H -0.197 1.197 11 H -0.198 1.198 12 H -0.161 1.161 13 C 0.368 3.632 14 O -0.459 6.459 15 C -0.183 4.183 16 C -0.225 4.225 17 C -0.085 4.085 18 C -0.142 4.142 19 N -0.025 5.025 20 C 0.018 3.982 21 C -0.093 4.093 22 C -0.099 4.099 23 C -0.065 4.065 24 C -0.024 4.024 25 C -0.040 4.040 26 N -0.134 5.134 27 C -0.088 4.088 28 N -0.088 5.088 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.181 0.819 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.183 0.817 42 H 0.209 0.791 43 H 0.188 0.812 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.607 -11.151 24.675 34.642 hybrid contribution 1.244 1.563 -0.973 2.222 sum -20.362 -9.588 23.702 32.685 Atomic orbital electron populations 1.21959 0.93795 1.02826 1.01319 1.21733 0.95927 0.80924 1.02695 1.47925 1.62632 1.14979 1.06130 1.19396 0.94469 0.93457 0.82144 1.21511 0.95602 1.33594 1.06987 0.95831 1.25885 0.96360 0.96905 0.99506 1.70048 1.14431 1.46973 1.27100 0.85676 0.80300 0.79075 0.77699 1.19693 1.19759 1.16119 1.17502 0.78215 0.84672 0.82843 1.90713 1.46610 1.21859 1.86724 1.21791 1.06350 0.95157 0.95004 1.21721 1.07726 1.03136 0.89958 1.22166 1.00560 0.88164 0.97620 1.20709 1.05837 1.05084 0.82580 1.43086 1.40795 1.15480 1.03108 1.17553 0.98228 0.82658 0.99763 1.21724 0.91268 1.02725 0.93542 1.21458 0.99162 0.89160 1.00095 1.21760 0.92634 1.00654 0.91406 1.15728 1.02047 0.84246 1.00353 1.25869 0.92653 0.92775 0.92656 1.81348 1.09367 1.13149 1.09581 1.20925 0.98737 0.90115 0.98976 1.73909 1.17592 1.16632 1.00631 0.93420 0.89820 0.92565 0.91292 0.89753 0.92984 0.95824 0.92147 0.81864 0.87222 0.88585 0.88864 0.81748 0.79116 0.81191 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.64 71.99 0.69 -3.48 16 2 C 0.11 4.11 5.68 86.38 0.49 4.60 16 3 N -0.59 -27.46 2.46 -829.76 -2.04 -29.50 16 4 C 0.23 11.95 4.17 85.63 0.36 12.30 16 5 C -0.54 -33.69 9.94 25.60 0.25 -33.44 16 6 H 0.02 1.66 8.06 -2.91 -0.02 1.63 16 7 C 0.01 0.70 5.47 84.66 0.46 1.16 16 8 N -0.95 -61.97 13.96 21.45 0.30 -61.67 16 9 Si 0.95 45.97 27.47 68.60 1.88 47.85 16 10 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 13 C 0.58 27.51 7.64 86.74 0.66 28.18 16 14 O -0.58 -32.03 16.56 -3.95 -0.07 -32.10 16 15 C -0.02 -0.87 6.59 42.45 0.28 -0.59 16 16 C -0.20 -5.82 10.72 22.41 0.24 -5.58 16 17 C 0.04 0.73 6.73 41.27 0.28 1.00 16 18 C -0.08 -0.65 8.74 71.24 0.62 -0.03 16 19 N -0.24 -5.25 3.44 -175.69 -0.60 -5.85 16 20 C 0.11 1.50 6.02 38.07 0.23 1.73 16 21 C -0.07 -0.34 8.45 22.44 0.19 -0.15 16 22 C -0.08 0.05 10.02 22.21 0.22 0.27 16 23 C -0.04 -0.12 9.75 22.56 0.22 0.10 16 24 C -0.02 -0.21 5.73 -21.38 -0.12 -0.34 16 25 C 0.28 4.72 15.33 88.33 1.35 6.07 16 26 N -0.46 -10.81 18.54 19.01 0.35 -10.46 16 27 C -0.07 -0.99 9.45 22.67 0.21 -0.78 16 28 N -0.25 -7.63 6.55 -48.17 -0.32 -7.95 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 1.70 6.40 -2.39 -0.02 1.69 16 32 H 0.07 2.66 8.04 -2.39 -0.02 2.64 16 33 H 0.08 3.07 5.82 -2.39 -0.01 3.06 16 34 H 0.05 2.51 7.13 -2.39 -0.02 2.49 16 35 H 0.02 1.30 6.93 -2.39 -0.02 1.29 16 36 H 0.27 16.31 8.31 -92.71 -0.77 15.53 16 37 H 0.16 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.11 0.25 7.61 -2.39 -0.02 0.24 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.40 7.40 -2.39 -0.02 0.38 16 41 H 0.17 0.11 6.55 -2.91 -0.02 0.09 16 42 H 0.19 -1.61 8.06 -2.91 -0.02 -1.63 16 43 H 0.17 -0.42 8.06 -2.91 -0.02 -0.45 16 44 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -91.64 378.71 7.14 -84.50 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: 0.98 Total: 4.11 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.65 Total: 11.05 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -2.31 Total: -115.42 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.07 Total: -32.10 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.88 Total: 47.85 kcal Total: -91.64 7.14 -84.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356796336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.847 kcal (2) G-P(sol) polarization free energy of solvation -91.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds