Wall clock time and date at job start Tue Mar 31 2020 20:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47084 * 2 1 4 4 N 1.46903 * 109.47232 * 119.99502 * 2 1 3 5 5 C 1.46895 * 111.00273 * 275.00234 * 4 2 1 6 6 C 1.50701 * 109.47055 * 180.02562 * 5 4 2 7 7 C 1.38295 * 119.93297 * 89.99744 * 6 5 4 8 8 C 1.38099 * 120.06865 * 180.25412 * 7 6 5 9 9 C 1.38882 * 119.93206 * 359.47410 * 8 7 6 10 10 O 1.35746 * 120.07145 * 180.25590 * 9 8 7 11 11 C 1.34834 * 117.00340 * 174.73672 * 10 9 8 12 12 H 1.08003 * 119.99155 * 5.05417 * 11 10 9 13 13 C 1.38652 * 120.00189 * 185.05311 * 11 10 9 14 14 N 1.31560 * 119.99769 * 179.97438 * 13 11 10 15 15 Si 1.86794 * 120.00099 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.47365 * 90.00106 * 15 13 11 17 17 H 1.48504 * 109.47275 * 210.00122 * 15 13 11 18 18 H 1.48500 * 109.47373 * 330.00058 * 15 13 11 19 19 C 1.38876 * 119.85943 * 0.52538 * 9 8 7 20 20 C 1.38100 * 119.93177 * 359.72571 * 19 9 8 21 21 C 1.50697 * 109.47072 * 239.99899 * 2 1 3 22 22 N 1.30801 * 126.24865 * 285.02438 * 21 2 1 23 23 N 1.28673 * 110.29498 * 179.97438 * 22 21 2 24 24 C 1.32312 * 109.48237 * 359.97438 * 23 22 21 25 25 C 1.40817 * 133.46993 * 180.02562 * 24 23 22 26 26 C 1.36022 * 119.22727 * 179.97438 * 25 24 23 27 27 C 1.40546 * 119.74881 * 0.02562 * 26 25 24 28 28 C 1.34957 * 120.36518 * 359.97438 * 27 26 25 29 29 N 1.36062 * 126.24413 * 104.70993 * 21 2 1 30 30 H 1.09011 * 109.47108 * 300.00005 * 1 2 3 31 31 H 1.08999 * 109.47141 * 60.00098 * 1 2 3 32 32 H 1.08998 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.00900 * 110.99842 * 38.95799 * 4 2 1 34 34 H 1.08996 * 109.47140 * 60.00358 * 5 4 2 35 35 H 1.09003 * 109.46913 * 299.99590 * 5 4 2 36 36 H 1.08000 * 119.96836 * 359.97438 * 7 6 5 37 37 H 1.08002 * 120.03655 * 179.72759 * 8 7 6 38 38 H 0.96997 * 119.99989 * 179.97438 * 14 13 11 39 39 H 1.07996 * 120.03796 * 179.70626 * 19 9 8 40 40 H 1.07997 * 119.96864 * 179.97438 * 20 19 9 41 41 H 1.08004 * 120.38604 * 359.97438 * 25 24 23 42 42 H 1.08001 * 120.12265 * 179.97438 * 26 25 24 43 43 H 1.07997 * 119.81556 * 180.02562 * 27 26 25 44 44 H 1.07996 * 119.75012 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5886 -0.5214 3.5557 7 6 3.9458 -0.5723 3.8165 8 6 4.4130 -1.2578 4.9206 9 6 3.5176 -1.8872 5.7755 10 8 3.9734 -2.5574 6.8644 11 6 3.0476 -3.0520 7.7107 12 1 1.9983 -2.9784 7.4659 13 6 3.4427 -3.6551 8.8950 14 7 2.5393 -4.1373 9.7209 15 14 5.2576 -3.7818 9.3185 16 1 5.6728 -2.5781 10.0828 17 1 5.4902 -4.9956 10.1419 18 1 6.0527 -3.8725 8.0676 19 6 2.1553 -1.8343 5.5109 20 6 1.6947 -1.1516 4.4023 21 6 2.0323 -0.7104 -1.2304 22 7 2.0323 -2.0029 -1.4314 23 7 2.5306 -2.2750 -2.5861 24 6 2.8797 -1.1517 -3.1919 25 6 3.4593 -0.8654 -4.4429 26 6 3.7005 0.4296 -4.7824 27 6 3.3702 1.4590 -3.8844 28 6 2.8152 1.1695 -2.6888 29 7 2.5632 -0.1240 -2.3375 30 1 -0.3634 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.4496 -1.4978 1.4101 34 1 1.0871 0.6163 2.5526 35 1 2.7589 1.0463 2.1182 36 1 4.6413 -0.0792 3.1536 37 1 5.4733 -1.3009 5.1213 38 1 2.8156 -4.5595 10.5493 39 1 1.4568 -2.3267 6.1711 40 1 0.6354 -1.1104 4.1958 41 1 3.7094 -1.6646 -5.1249 42 1 4.1449 0.6656 -5.7380 43 1 3.5609 2.4876 -4.1530 44 1 2.5658 1.9683 -2.0062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390410123.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:53 Heat of formation + Delta-G solvation = 114.003719 kcal Electronic energy + Delta-G solvation = -27238.101542 eV Core-core repulsion = 23351.162910 eV Total energy + Delta-G solvation = -3886.938632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.76962 -39.26553 -38.54696 -37.68157 -36.32880 -34.25405 -32.49724 -31.89301 -31.25515 -30.24579 -29.23335 -28.48997 -25.71694 -24.62214 -24.56965 -23.56856 -23.51043 -22.06082 -20.89702 -20.44549 -18.45171 -17.89169 -17.53024 -17.27076 -16.81438 -16.37303 -15.78644 -15.51684 -15.15848 -14.85408 -14.54771 -14.39043 -13.94093 -13.76485 -13.50108 -13.25014 -13.05380 -12.86552 -12.76355 -12.66506 -12.53606 -12.29732 -12.13704 -11.86798 -11.80467 -11.76783 -11.50330 -11.27536 -10.81035 -10.74073 -10.67762 -10.65397 -10.15166 -9.85592 -9.38642 -8.87466 -8.58820 -8.36300 -8.24678 -7.33108 -6.41559 -4.08059 0.22558 0.76813 1.91587 2.14303 2.18557 2.49762 2.99301 3.22802 3.26174 3.41600 3.69203 3.88145 4.06187 4.14621 4.24301 4.34208 4.44042 4.48506 4.58812 4.69278 4.74759 4.86972 5.08995 5.10508 5.14553 5.19827 5.26370 5.38838 5.42460 5.51014 5.63867 5.65296 5.69837 5.72515 5.78945 5.80928 5.96293 6.12932 6.33839 6.52352 6.57222 6.77721 6.83787 7.05419 7.21413 7.27257 7.34813 7.61642 7.80167 8.03924 8.37933 8.93703 9.56129 10.65979 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.001965 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.238122 B =14244.646580 C =14525.197054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.177 3.823 3 H 0.092 0.908 4 N -0.671 5.671 5 C 0.119 3.881 6 C -0.179 4.179 7 C -0.052 4.052 8 C -0.194 4.194 9 C 0.163 3.837 10 O -0.217 6.217 11 C -0.389 4.389 12 H 0.107 0.893 13 C 0.063 3.937 14 N -0.879 5.879 15 Si 0.906 3.094 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.259 1.259 19 C -0.221 4.221 20 C -0.064 4.064 21 C 0.166 3.834 22 N -0.231 5.231 23 N -0.288 5.288 24 C 0.184 3.816 25 C -0.075 4.075 26 C -0.094 4.094 27 C -0.140 4.140 28 C 0.067 3.933 29 N -0.390 5.390 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.357 0.643 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.279 0.721 39 H 0.133 0.867 40 H 0.107 0.893 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.155 0.845 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 15.759 -27.812 31.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.063 3.937 3 H 0.110 0.890 4 N -0.304 5.304 5 C -0.008 4.008 6 C -0.180 4.180 7 C -0.071 4.071 8 C -0.214 4.214 9 C 0.111 3.889 10 O -0.122 6.122 11 C -0.465 4.465 12 H 0.124 0.876 13 C -0.140 4.140 14 N -0.517 5.517 15 Si 0.731 3.269 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.183 1.183 19 C -0.241 4.241 20 C -0.083 4.083 21 C -0.098 4.098 22 N -0.070 5.070 23 N -0.134 5.134 24 C -0.065 4.065 25 C -0.096 4.096 26 C -0.118 4.118 27 C -0.162 4.162 28 C -0.056 4.056 29 N -0.070 5.070 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.178 0.822 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.150 0.850 40 H 0.125 0.875 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.172 0.828 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.486 14.039 -27.261 30.667 hybrid contribution -0.093 1.260 0.292 1.297 sum -0.578 15.299 -26.969 31.011 Atomic orbital electron populations 1.22506 0.94726 1.03844 1.02743 1.19651 0.93109 0.95653 0.85247 0.89045 1.60379 1.57808 1.09923 1.02314 1.20688 0.98845 0.93726 0.87583 1.19087 0.93706 1.07153 0.98077 1.20440 0.94367 0.97109 0.95178 1.20211 0.98750 1.04796 0.97616 1.19151 0.92105 0.90052 0.87624 1.83574 1.36542 1.61703 1.30334 1.20771 0.89461 1.37043 0.99196 0.87604 1.24474 0.99860 0.95447 0.94257 1.69647 1.33784 1.37273 1.10963 0.86178 0.83701 0.77809 0.79204 1.19902 1.20766 1.18337 1.21235 0.95716 1.06388 1.00724 1.20642 0.98031 0.95780 0.93858 1.24839 1.04158 0.90329 0.90461 1.74221 1.13862 1.10164 1.08710 1.75027 1.16682 1.19873 1.01800 1.22373 1.04194 0.84913 0.94993 1.20304 0.98837 0.98224 0.92282 1.21167 0.98716 0.91635 1.00309 1.20926 1.01044 1.01331 0.92905 1.21653 1.00816 0.84462 0.98654 1.43719 1.40737 1.07791 1.14772 0.90879 0.92142 0.90937 0.82219 0.94723 0.91065 0.87026 0.86589 0.91046 0.84966 0.87510 0.82662 0.83593 0.82786 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 9.14 37.16 0.34 -1.11 16 2 C 0.18 1.71 3.06 -68.86 -0.21 1.50 16 3 H 0.09 0.68 7.37 -51.93 -0.38 0.30 16 4 N -0.67 -8.17 6.22 -109.22 -0.68 -8.85 16 5 C 0.12 1.41 5.61 -4.98 -0.03 1.38 16 6 C -0.18 -2.84 5.40 -104.57 -0.56 -3.41 16 7 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 8 C -0.19 -3.90 9.99 -39.39 -0.39 -4.29 16 9 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 10 O -0.22 -5.77 8.59 0.05 0.00 -5.77 16 11 C -0.39 -11.02 9.95 30.89 0.31 -10.71 16 12 H 0.11 3.05 5.44 -52.48 -0.29 2.77 16 13 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 14 N -0.88 -25.48 13.96 55.48 0.77 -24.70 16 15 Si 0.91 21.86 28.62 -169.99 -4.86 17.00 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.22 -4.74 9.17 -39.40 -0.36 -5.10 16 20 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 21 C 0.17 2.02 6.98 -154.23 -1.08 0.94 16 22 N -0.23 -3.57 12.18 32.94 0.40 -3.17 16 23 N -0.29 -4.41 12.31 31.14 0.38 -4.02 16 24 C 0.18 2.17 7.92 -156.05 -1.24 0.93 16 25 C -0.08 -0.57 10.11 -39.40 -0.40 -0.97 16 26 C -0.09 -0.44 10.07 -39.51 -0.40 -0.84 16 27 C -0.14 -0.59 9.98 -39.88 -0.40 -0.99 16 28 C 0.07 0.41 10.80 -16.69 -0.18 0.23 16 29 N -0.39 -4.02 2.95 -59.73 -0.18 -4.20 16 30 H 0.07 0.52 7.45 -51.92 -0.39 0.13 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 33 H 0.36 4.67 8.46 -39.29 -0.33 4.34 16 34 H 0.03 0.36 7.38 -51.93 -0.38 -0.02 16 35 H 0.07 0.76 8.00 -51.93 -0.42 0.35 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.13 2.98 5.64 -52.49 -0.30 2.69 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.16 0.87 8.06 -52.48 -0.42 0.44 16 42 H 0.15 0.23 8.06 -52.49 -0.42 -0.19 16 43 H 0.15 0.14 8.06 -52.49 -0.42 -0.29 16 44 H 0.17 0.51 7.76 -52.49 -0.41 0.10 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -34.41 376.26 -9.62 -44.03 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.41 Total: 4.03 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -5.72 Total: -20.01 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.70 Total: -44.95 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: 0.00 Total: -5.77 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.41 -9.62 -44.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390410123.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.030 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds