Wall clock time and date at job start Tue Mar 31 2020 21:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47153 * 2 1 4 4 C 1.47194 * 109.47134 * 239.99836 * 2 1 3 5 5 N 2.60798 * 109.46945 * 239.99737 * 2 1 3 6 6 N 1.46507 * 109.47164 * 120.00147 * 2 1 3 7 7 C 1.46495 * 119.99985 * 59.99489 * 6 2 1 8 8 C 1.34776 * 119.99884 * 239.99947 * 6 2 1 9 9 O 1.21637 * 119.99918 * 4.78045 * 8 6 2 10 10 C 1.47176 * 119.99652 * 184.78073 * 8 6 2 11 11 C 1.41084 * 126.48174 * 324.09102 * 10 8 6 12 12 N 1.30466 * 108.29912 * 179.87990 * 11 10 8 13 13 N 1.39904 * 109.22091 * 0.39192 * 12 11 10 14 14 C 1.46496 * 125.81029 * 179.77040 * 13 12 11 15 15 C 1.50693 * 109.47465 * 269.97848 * 14 13 12 16 16 H 1.08004 * 119.99650 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00492 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99749 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00385 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46901 * 60.00189 * 19 17 15 21 21 H 1.48494 * 109.46944 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47178 * 300.00062 * 19 17 15 23 23 C 1.35173 * 108.38515 * 359.75095 * 13 12 11 24 24 C 1.47748 * 126.47498 * 180.02562 * 23 13 12 25 25 C 1.39610 * 120.14302 * 314.69648 * 24 23 13 26 26 C 1.37953 * 119.84589 * 179.69951 * 25 24 23 27 27 C 1.38357 * 120.14954 * 0.57588 * 26 25 24 28 28 C 1.38367 * 120.29754 * 359.72324 * 27 26 25 29 29 C 1.37946 * 120.15101 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47162 * 300.00173 * 1 2 3 31 31 H 1.09001 * 109.47189 * 59.99650 * 1 2 3 32 32 H 1.09003 * 109.47736 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47356 * 269.88962 * 7 6 2 34 34 H 1.09004 * 109.47494 * 149.88470 * 7 6 2 35 35 H 1.09006 * 109.47308 * 29.88809 * 7 6 2 36 36 H 1.08002 * 125.84696 * 0.02562 * 11 10 8 37 37 H 1.09004 * 109.46828 * 29.97618 * 14 13 12 38 38 H 1.08996 * 109.47358 * 149.97072 * 14 13 12 39 39 H 0.97001 * 119.99675 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.07660 * 359.97438 * 25 24 23 41 41 H 1.08007 * 119.92310 * 180.29615 * 26 25 24 42 42 H 1.07997 * 119.85380 * 179.69660 * 27 26 25 43 43 H 1.08006 * 119.92076 * 179.97438 * 28 27 26 44 44 H 1.07999 * 120.07359 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2018 5 7 2.3992 -1.2295 -2.1294 6 7 2.0183 -0.6907 1.1962 7 6 1.6644 -2.0932 1.4280 8 6 2.7932 -0.0357 2.0834 9 8 3.0155 1.1512 1.9368 10 6 3.3703 -0.7566 3.2294 11 6 2.7588 -1.7971 3.9600 12 7 3.5833 -2.1800 4.8958 13 7 4.7499 -1.4111 4.8246 14 6 5.9125 -1.5337 5.7075 15 6 5.7386 -0.6242 6.8964 16 1 4.8510 -0.0153 6.9852 17 6 6.7126 -0.5692 7.8707 18 7 7.7933 -1.3110 7.7628 19 14 6.4973 0.5587 9.3441 20 1 5.2692 0.1752 10.0858 21 1 7.6751 0.4334 10.2397 22 1 6.3761 1.9636 8.8785 23 6 4.6221 -0.5360 3.8023 24 6 5.6205 0.4647 3.3727 25 6 6.2726 1.2560 4.3202 26 6 7.2084 2.1841 3.9127 27 6 7.4924 2.3401 2.5676 28 6 6.8452 1.5635 1.6229 29 6 5.9119 0.6273 2.0171 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3635 -1.0277 0.0005 33 1 0.7386 -2.1443 2.0011 34 1 2.4637 -2.5825 1.9846 35 1 1.5274 -2.5964 0.4708 36 1 1.7774 -2.2081 3.7746 37 1 6.0022 -2.5649 6.0490 38 1 6.8136 -1.2516 5.1630 39 1 8.4783 -1.2727 8.4485 40 1 6.0483 1.1386 5.3701 41 1 7.7171 2.7936 4.6451 42 1 8.2222 3.0716 2.2536 43 1 7.0714 1.6906 0.5745 44 1 5.4078 0.0215 1.2786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410881440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:40 Heat of formation + Delta-G solvation = 101.350200 kcal Electronic energy + Delta-G solvation = -29096.453629 eV Core-core repulsion = 25208.966299 eV Total energy + Delta-G solvation = -3887.487329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.07054 -39.52837 -38.37114 -37.12422 -35.43332 -34.03021 -32.38597 -32.01217 -31.10165 -30.41698 -28.45746 -27.48669 -27.07809 -24.82359 -23.59574 -22.69087 -22.22395 -21.37823 -20.03387 -18.96317 -17.94787 -17.23646 -16.85665 -16.65242 -15.91614 -15.46941 -15.27273 -14.76419 -14.63566 -14.31545 -14.09397 -14.01844 -13.83612 -13.43767 -13.31379 -13.15668 -12.98557 -12.82026 -12.64244 -12.57412 -12.37524 -12.23122 -12.12759 -12.10664 -11.73477 -11.53201 -11.18385 -10.98615 -10.92306 -10.71047 -10.42774 -10.34913 -10.01833 -9.58340 -9.20224 -8.94533 -8.76166 -8.49003 -8.28251 -7.83672 -6.39210 -4.47831 1.31805 1.86001 2.13192 2.27602 2.52164 2.70336 3.09424 3.15935 3.21032 3.23127 3.31170 3.46353 3.71798 4.17897 4.25416 4.62720 4.74938 4.84161 4.92935 4.95174 5.06231 5.26364 5.26779 5.28764 5.33670 5.37767 5.49526 5.56817 5.63289 5.71806 5.76459 5.82535 5.91294 6.13179 6.28505 6.30463 6.49982 6.63889 6.78940 6.84298 6.94868 6.98451 7.05120 7.22916 7.31238 7.37270 7.47428 7.66617 7.70423 8.23415 8.32821 8.56928 9.18512 10.68433 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.003754 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.346507 B = 7457.073519 C = 8639.959797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.237 3.763 3 H 0.142 0.858 4 C 0.199 3.801 5 N -0.421 5.421 6 N -0.613 5.613 7 C 0.071 3.929 8 C 0.608 3.392 9 O -0.530 6.530 10 C -0.313 4.313 11 C 0.055 3.945 12 N -0.288 5.288 13 N -0.304 5.304 14 C 0.251 3.749 15 C -0.543 4.543 16 H 0.067 0.933 17 C 0.072 3.928 18 N -0.884 5.884 19 Si 0.904 3.096 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.195 3.805 24 C -0.036 4.036 25 C -0.078 4.078 26 C -0.125 4.125 27 C -0.111 4.111 28 C -0.132 4.132 29 C -0.073 4.073 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.183 0.817 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.271 0.729 40 H 0.153 0.847 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.554 3.019 -12.295 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.129 3.871 3 H 0.160 0.840 4 C -0.121 4.121 5 N -0.098 5.098 6 N -0.349 5.349 7 C -0.072 4.072 8 C 0.399 3.601 9 O -0.406 6.406 10 C -0.329 4.329 11 C -0.130 4.130 12 N -0.108 5.108 13 N -0.080 5.080 14 C 0.134 3.866 15 C -0.582 4.582 16 H 0.085 0.915 17 C -0.133 4.133 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.196 1.196 23 C 0.058 3.942 24 C -0.038 4.038 25 C -0.096 4.096 26 C -0.143 4.143 27 C -0.130 4.130 28 C -0.150 4.150 29 C -0.092 4.092 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.200 0.800 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.170 0.830 41 H 0.141 0.859 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.366 1.907 -12.517 15.176 hybrid contribution -0.363 1.047 0.549 1.237 sum -8.729 2.954 -11.968 15.105 Atomic orbital electron populations 1.22111 0.91552 1.03663 1.04118 1.18366 0.95122 0.96943 0.76645 0.84031 1.29699 0.93485 0.94029 0.94889 1.81199 1.08386 1.08607 1.11614 1.47665 1.52827 1.13102 1.21314 1.22113 1.01891 0.81039 1.02188 1.17387 0.76084 0.85813 0.80773 1.90786 1.59592 1.14643 1.75562 1.19641 0.98021 1.08904 1.06306 1.23887 0.99708 0.95534 0.93904 1.77147 0.93719 1.18224 1.21740 1.49627 1.14177 1.22543 1.21645 1.19931 0.78485 1.00304 0.87920 1.21162 1.06192 1.25320 1.05484 0.91477 1.24907 0.94564 0.95744 0.98109 1.69908 1.08397 1.38612 1.35117 0.86438 0.77974 0.80886 0.81659 1.19804 1.20836 1.19642 1.19687 0.93892 0.91552 0.89030 1.17919 0.96337 0.95976 0.93530 1.21935 0.93489 0.92895 1.01329 1.21067 0.98451 0.99064 0.95715 1.21188 0.99389 0.99029 0.93345 1.20871 0.97874 0.97121 0.99158 1.20925 0.96598 0.97680 0.94008 0.89814 0.90578 0.91420 0.91752 0.89195 0.91816 0.80014 0.92395 0.92459 0.91946 0.82958 0.85925 0.86454 0.86380 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.15 37.16 0.34 -0.59 16 2 C 0.24 2.15 3.10 -70.72 -0.22 1.93 16 3 H 0.14 1.35 6.91 -51.93 -0.36 0.99 16 4 C 0.20 2.15 13.90 -20.76 -0.29 1.86 16 5 N -0.42 -5.57 18.54 42.15 0.78 -4.79 16 6 N -0.61 -6.80 2.74 -178.53 -0.49 -7.29 16 7 C 0.07 0.62 8.10 59.84 0.48 1.10 16 8 C 0.61 9.24 6.62 -12.63 -0.08 9.16 16 9 O -0.53 -9.36 14.94 5.24 0.08 -9.28 16 10 C -0.31 -5.40 5.41 -104.75 -0.57 -5.96 16 11 C 0.05 0.88 9.60 -17.05 -0.16 0.72 16 12 N -0.29 -5.80 12.48 30.82 0.38 -5.42 16 13 N -0.30 -6.59 3.59 -58.20 -0.21 -6.80 16 14 C 0.25 6.02 5.42 -5.20 -0.03 5.99 16 15 C -0.54 -13.81 7.23 -34.44 -0.25 -14.06 16 16 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 17 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 18 N -0.88 -23.53 13.29 55.43 0.74 -22.80 16 19 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 C 0.19 3.88 6.50 -82.07 -0.53 3.35 16 24 C -0.04 -0.69 5.00 -104.99 -0.53 -1.21 16 25 C -0.08 -1.52 8.64 -39.17 -0.34 -1.86 16 26 C -0.12 -2.08 10.03 -39.64 -0.40 -2.48 16 27 C -0.11 -1.63 10.04 -39.49 -0.40 -2.03 16 28 C -0.13 -1.98 10.03 -39.64 -0.40 -2.38 16 29 C -0.07 -1.24 8.27 -39.18 -0.32 -1.57 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.36 7.67 -51.93 -0.40 -0.04 16 33 H 0.06 0.41 7.61 -51.93 -0.40 0.02 16 34 H 0.09 0.91 5.36 -51.93 -0.28 0.64 16 35 H 0.06 0.50 7.27 -51.93 -0.38 0.12 16 36 H 0.18 2.08 6.29 -52.49 -0.33 1.75 16 37 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.06 1.42 7.32 -51.93 -0.38 1.04 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.15 3.30 5.56 -52.48 -0.29 3.01 16 41 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 43 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 44 H 0.11 1.83 7.53 -52.49 -0.40 1.44 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -30.59 375.19 -7.16 -37.75 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.29 Total: 4.34 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -3.78 Total: -6.30 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 1.20 Total: -47.09 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.59 -7.16 -37.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410881440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.101 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds