Wall clock time and date at job start Tue Mar 31 2020 21:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47153 * 2 1 4 4 C 1.47194 * 109.47134 * 239.99836 * 2 1 3 5 5 N 2.60798 * 109.46945 * 239.99737 * 2 1 3 6 6 N 1.46507 * 109.47164 * 120.00147 * 2 1 3 7 7 C 1.46495 * 119.99985 * 59.99489 * 6 2 1 8 8 C 1.34776 * 119.99884 * 239.99947 * 6 2 1 9 9 O 1.21637 * 119.99918 * 4.78045 * 8 6 2 10 10 C 1.47176 * 119.99652 * 184.78073 * 8 6 2 11 11 C 1.41084 * 126.48174 * 324.09102 * 10 8 6 12 12 N 1.30466 * 108.29912 * 179.87990 * 11 10 8 13 13 N 1.39904 * 109.22091 * 0.39192 * 12 11 10 14 14 C 1.46496 * 125.81029 * 179.77040 * 13 12 11 15 15 C 1.50693 * 109.47465 * 269.97848 * 14 13 12 16 16 H 1.08004 * 119.99650 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00492 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99749 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00385 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46901 * 60.00189 * 19 17 15 21 21 H 1.48494 * 109.46944 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47178 * 300.00062 * 19 17 15 23 23 C 1.35173 * 108.38515 * 359.75095 * 13 12 11 24 24 C 1.47748 * 126.47498 * 180.02562 * 23 13 12 25 25 C 1.39610 * 120.14302 * 314.69648 * 24 23 13 26 26 C 1.37953 * 119.84589 * 179.69951 * 25 24 23 27 27 C 1.38357 * 120.14954 * 0.57588 * 26 25 24 28 28 C 1.38367 * 120.29754 * 359.72324 * 27 26 25 29 29 C 1.37946 * 120.15101 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.47162 * 300.00173 * 1 2 3 31 31 H 1.09001 * 109.47189 * 59.99650 * 1 2 3 32 32 H 1.09003 * 109.47736 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47356 * 269.88962 * 7 6 2 34 34 H 1.09004 * 109.47494 * 149.88470 * 7 6 2 35 35 H 1.09006 * 109.47308 * 29.88809 * 7 6 2 36 36 H 1.08002 * 125.84696 * 0.02562 * 11 10 8 37 37 H 1.09004 * 109.46828 * 29.97618 * 14 13 12 38 38 H 1.08996 * 109.47358 * 149.97072 * 14 13 12 39 39 H 0.97001 * 119.99675 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.07660 * 359.97438 * 25 24 23 41 41 H 1.08007 * 119.92310 * 180.29615 * 26 25 24 42 42 H 1.07997 * 119.85380 * 179.69660 * 27 26 25 43 43 H 1.08006 * 119.92076 * 179.97438 * 28 27 26 44 44 H 1.07999 * 120.07359 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2018 5 7 2.3992 -1.2295 -2.1294 6 7 2.0183 -0.6907 1.1962 7 6 1.6644 -2.0932 1.4280 8 6 2.7932 -0.0357 2.0834 9 8 3.0155 1.1512 1.9368 10 6 3.3703 -0.7566 3.2294 11 6 2.7588 -1.7971 3.9600 12 7 3.5833 -2.1800 4.8958 13 7 4.7499 -1.4111 4.8246 14 6 5.9125 -1.5337 5.7075 15 6 5.7386 -0.6242 6.8964 16 1 4.8510 -0.0153 6.9852 17 6 6.7126 -0.5692 7.8707 18 7 7.7933 -1.3110 7.7628 19 14 6.4973 0.5587 9.3441 20 1 5.2692 0.1752 10.0858 21 1 7.6751 0.4334 10.2397 22 1 6.3761 1.9636 8.8785 23 6 4.6221 -0.5360 3.8023 24 6 5.6205 0.4647 3.3727 25 6 6.2726 1.2560 4.3202 26 6 7.2084 2.1841 3.9127 27 6 7.4924 2.3401 2.5676 28 6 6.8452 1.5635 1.6229 29 6 5.9119 0.6273 2.0171 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3635 -1.0277 0.0005 33 1 0.7386 -2.1443 2.0011 34 1 2.4637 -2.5825 1.9846 35 1 1.5274 -2.5964 0.4708 36 1 1.7774 -2.2081 3.7746 37 1 6.0022 -2.5649 6.0490 38 1 6.8136 -1.2516 5.1630 39 1 8.4783 -1.2727 8.4485 40 1 6.0483 1.1386 5.3701 41 1 7.7171 2.7936 4.6451 42 1 8.2222 3.0716 2.2536 43 1 7.0714 1.6906 0.5745 44 1 5.4078 0.0215 1.2786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410881440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:39 Heat of formation + Delta-G solvation = 83.944543 kcal Electronic energy + Delta-G solvation = -29097.208395 eV Core-core repulsion = 25208.966299 eV Total energy + Delta-G solvation = -3888.242095 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.45567 -40.64501 -39.68167 -38.13337 -36.44000 -35.82869 -33.91615 -33.22074 -32.29034 -31.73360 -29.80295 -29.15588 -27.93734 -25.93889 -25.06438 -24.05240 -23.56288 -22.62649 -21.40302 -20.27739 -18.85917 -18.78754 -18.47214 -17.88041 -17.04337 -16.79958 -16.55453 -16.31964 -15.95498 -15.63492 -15.19633 -15.13897 -15.06167 -14.84198 -14.37797 -14.26779 -14.16258 -14.01963 -13.94227 -13.66292 -13.58096 -13.53070 -13.27190 -13.02121 -12.84811 -12.76673 -12.71960 -12.34852 -12.21037 -12.18573 -12.02862 -11.86440 -11.78826 -10.86219 -10.75050 -10.65127 -9.91983 -9.81617 -9.76419 -9.22255 -8.36453 -6.51956 -0.04512 0.53492 0.94801 1.19644 1.32664 1.38634 1.39644 1.47587 1.66374 1.67342 2.18530 2.32346 2.36086 2.84653 2.92153 2.95933 3.48678 3.63283 3.94352 3.99338 4.07037 4.13532 4.21556 4.27496 4.28912 4.36626 4.53449 4.57793 4.70212 4.77319 4.81248 4.83707 4.91760 4.96681 4.98956 5.02920 5.17550 5.32780 5.44771 5.46906 5.51748 5.60883 5.63039 5.65914 5.74848 5.98034 6.08820 6.22553 6.41121 6.54717 6.79853 7.15888 7.17707 8.71190 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013821 B = 0.003754 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.346507 B = 7457.073519 C = 8639.959797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.238 3.762 3 H 0.139 0.861 4 C 0.222 3.778 5 N -0.463 5.463 6 N -0.603 5.603 7 C 0.062 3.938 8 C 0.612 3.388 9 O -0.558 6.558 10 C -0.311 4.311 11 C 0.079 3.921 12 N -0.327 5.327 13 N -0.331 5.331 14 C 0.273 3.727 15 C -0.546 4.546 16 H 0.053 0.947 17 C 0.030 3.970 18 N -0.913 5.913 19 Si 0.963 3.037 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.264 1.264 23 C 0.175 3.825 24 C -0.058 4.058 25 C -0.107 4.107 26 C -0.132 4.132 27 C -0.101 4.101 28 C -0.126 4.126 29 C -0.080 4.080 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.232 0.768 37 H 0.031 0.969 38 H 0.040 0.960 39 H 0.274 0.726 40 H 0.120 0.880 41 H 0.137 0.863 42 H 0.158 0.842 43 H 0.153 0.847 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.152 4.180 -13.951 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.131 3.869 3 H 0.157 0.843 4 C -0.097 4.097 5 N -0.140 5.140 6 N -0.337 5.337 7 C -0.080 4.080 8 C 0.402 3.598 9 O -0.436 6.436 10 C -0.327 4.327 11 C -0.106 4.106 12 N -0.147 5.147 13 N -0.107 5.107 14 C 0.154 3.846 15 C -0.584 4.584 16 H 0.071 0.929 17 C -0.172 4.172 18 N -0.551 5.551 19 Si 0.787 3.213 20 H -0.198 1.198 21 H -0.199 1.199 22 H -0.189 1.189 23 C 0.040 3.960 24 C -0.060 4.060 25 C -0.126 4.126 26 C -0.150 4.150 27 C -0.119 4.119 28 C -0.144 4.144 29 C -0.099 4.099 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.248 0.752 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.138 0.862 41 H 0.155 0.845 42 H 0.176 0.824 43 H 0.171 0.829 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.995 3.048 -14.209 17.637 hybrid contribution 0.062 0.687 0.909 1.141 sum -9.933 3.735 -13.300 17.015 Atomic orbital electron populations 1.22122 0.88410 1.04928 1.05263 1.18666 0.97246 0.96084 0.74896 0.84318 1.29916 0.92248 0.92995 0.94566 1.81234 1.09787 1.09990 1.12986 1.47611 1.51306 1.13930 1.20847 1.22344 1.02781 0.79353 1.03475 1.17081 0.76485 0.85333 0.80862 1.90771 1.60885 1.15772 1.76197 1.19977 0.97041 1.08777 1.06864 1.24642 1.00412 0.94006 0.91541 1.77083 0.94100 1.19529 1.23996 1.49312 1.14395 1.24347 1.22682 1.19326 0.79353 0.98129 0.87794 1.21216 1.05707 1.25293 1.06224 0.92889 1.25645 0.94133 0.96915 1.00483 1.69998 1.09101 1.39911 1.36095 0.85523 0.77963 0.79340 0.78498 1.19825 1.19925 1.18879 1.20169 0.95403 0.91558 0.88873 1.18101 0.97009 0.96333 0.94565 1.21779 0.95717 0.95129 0.99964 1.21316 0.97731 0.98490 0.97436 1.21602 0.99210 0.98996 0.92079 1.21317 0.96369 0.95666 1.01068 1.21053 0.97379 0.98514 0.92970 0.89268 0.88860 0.90102 0.88331 0.90689 0.90395 0.75205 0.95137 0.94213 0.91696 0.86164 0.84499 0.82433 0.82906 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.15 71.98 0.66 -0.56 16 2 C 0.24 3.69 3.10 43.18 0.13 3.82 16 3 H 0.14 2.36 6.91 -2.39 -0.02 2.34 16 4 C 0.22 4.32 13.90 89.44 1.24 5.56 16 5 N -0.46 -11.52 18.54 20.00 0.37 -11.15 16 6 N -0.60 -11.89 2.74 -836.99 -2.29 -14.18 16 7 C 0.06 0.89 8.10 127.77 1.04 1.92 16 8 C 0.61 17.87 6.62 86.59 0.57 18.45 16 9 O -0.56 -19.29 14.94 -4.15 -0.06 -19.35 16 10 C -0.31 -10.68 5.41 -19.95 -0.11 -10.79 16 11 C 0.08 2.47 9.60 85.59 0.82 3.30 16 12 N -0.33 -13.53 12.48 -56.40 -0.70 -14.24 16 13 N -0.33 -15.18 3.59 -338.04 -1.21 -16.40 16 14 C 0.27 14.07 5.42 85.63 0.46 14.54 16 15 C -0.55 -29.37 7.23 25.60 0.19 -29.18 16 16 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 17 C 0.03 1.60 5.46 84.65 0.46 2.06 16 18 N -0.91 -50.48 13.29 21.45 0.28 -50.20 16 19 Si 0.96 41.80 29.54 68.60 2.03 43.83 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 C 0.17 7.26 6.50 41.43 0.27 7.53 16 24 C -0.06 -2.33 5.00 -20.10 -0.10 -2.43 16 25 C -0.11 -4.38 8.64 22.53 0.19 -4.19 16 26 C -0.13 -4.39 10.03 22.23 0.22 -4.16 16 27 C -0.10 -2.74 10.04 22.33 0.22 -2.52 16 28 C -0.13 -3.54 10.03 22.23 0.22 -3.31 16 29 C -0.08 -2.71 8.27 22.53 0.19 -2.53 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.49 7.67 -2.39 -0.02 0.47 16 33 H 0.10 0.79 7.61 -2.39 -0.02 0.78 16 34 H 0.07 1.35 5.36 -2.38 -0.01 1.33 16 35 H 0.08 0.94 7.27 -2.38 -0.02 0.93 16 36 H 0.23 4.53 6.29 -2.91 -0.02 4.52 16 37 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.04 2.15 7.32 -2.39 -0.02 2.13 16 39 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.12 5.64 5.56 -2.91 -0.02 5.62 16 41 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 42 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 43 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 44 H 0.11 3.72 7.53 -2.91 -0.02 3.70 16 Total: -1.00 -71.34 375.19 6.14 -65.20 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 1.04 Total: 18.98 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 6.69 Total: -2.49 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -3.55 Total: -106.16 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.06 Total: -19.35 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -71.34 6.14 -65.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410881440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.143 kcal (2) G-P(sol) polarization free energy of solvation -71.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds