Wall clock time and date at job start Tue Mar 31 2020 21:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46941 * 2 1 4 4 C 1.47193 * 109.47020 * 120.00168 * 2 1 3 5 5 N 2.60794 * 109.47214 * 120.00379 * 2 1 3 6 6 N 1.46503 * 109.47218 * 240.00687 * 2 1 3 7 7 C 1.46503 * 119.99553 * 299.99987 * 6 2 1 8 8 C 1.34771 * 120.00209 * 120.00017 * 6 2 1 9 9 O 1.21634 * 120.00001 * 355.79826 * 8 6 2 10 10 C 1.47171 * 119.99690 * 175.80520 * 8 6 2 11 11 C 1.41087 * 126.48698 * 35.63715 * 10 8 6 12 12 N 1.30457 * 108.30674 * 179.87611 * 11 10 8 13 13 N 1.39911 * 109.21965 * 0.38783 * 12 11 10 14 14 C 1.46493 * 125.80819 * 179.77751 * 13 12 11 15 15 C 1.50710 * 109.47008 * 269.96744 * 14 13 12 16 16 H 1.08004 * 119.99505 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00012 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00440 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47062 * 90.00223 * 19 17 15 21 21 H 1.48499 * 109.47273 * 210.00219 * 19 17 15 22 22 H 1.48499 * 109.46920 * 330.00282 * 19 17 15 23 23 C 1.35183 * 108.38232 * 359.74561 * 13 12 11 24 24 C 1.47735 * 126.46768 * 179.97438 * 23 13 12 25 25 C 1.39611 * 120.15285 * 314.70766 * 24 23 13 26 26 C 1.37950 * 119.84830 * 179.70249 * 25 24 23 27 27 C 1.38362 * 120.14839 * 0.57302 * 26 25 24 28 28 C 1.38362 * 120.30014 * 359.72306 * 27 26 25 29 29 C 1.37948 * 120.15271 * 359.97438 * 28 27 26 30 30 H 1.09007 * 109.46894 * 300.00148 * 1 2 3 31 31 H 1.08996 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46723 * 59.99485 * 1 2 3 33 33 H 1.08996 * 109.47253 * 95.48671 * 7 6 2 34 34 H 1.08996 * 109.46920 * 215.48901 * 7 6 2 35 35 H 1.09004 * 109.47007 * 335.48472 * 7 6 2 36 36 H 1.08003 * 125.84202 * 0.02562 * 11 10 8 37 37 H 1.08995 * 109.47834 * 29.96691 * 14 13 12 38 38 H 1.09003 * 109.47338 * 149.97652 * 14 13 12 39 39 H 0.96997 * 120.00233 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.07272 * 359.97438 * 25 24 23 41 41 H 1.07999 * 119.92896 * 180.30048 * 26 25 24 42 42 H 1.08009 * 119.85058 * 179.70086 * 27 26 25 43 43 H 1.08003 * 119.92572 * 180.02562 * 28 27 26 44 44 H 1.07994 * 120.08034 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1293 6 7 2.0184 -0.6905 -1.1963 7 6 1.6644 -2.0931 -1.4282 8 6 2.7932 -0.0354 -2.0833 9 8 3.0242 1.1490 -1.9309 10 6 3.3597 -0.7533 -3.2365 11 6 2.7398 -1.7890 -3.9670 12 7 3.5541 -2.1669 -4.9135 13 7 4.7294 -1.4115 -4.8389 14 6 5.8886 -1.5399 -5.7253 15 6 6.8507 -2.5479 -5.1512 16 1 6.6216 -3.0429 -4.2190 17 6 8.0232 -2.8381 -5.8159 18 7 8.3024 -2.2350 -6.9508 19 14 9.2154 -4.0881 -5.1047 20 1 8.8802 -5.4402 -5.6190 21 1 10.6007 -3.7351 -5.5063 22 1 9.1128 -4.0825 -3.6232 23 6 4.6129 -0.5424 -3.8100 24 6 5.6231 0.4439 -3.3751 25 6 6.9630 0.0700 -3.2571 26 6 7.9021 0.9977 -2.8564 27 6 7.5167 2.2931 -2.5602 28 6 6.1895 2.6688 -2.6690 29 6 5.2411 1.7528 -3.0746 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 0.7929 -2.1447 -2.0808 34 1 2.5025 -2.6060 -1.8998 35 1 1.4345 -2.5719 -0.4763 36 1 1.7582 -2.1972 -3.7767 37 1 5.5585 -1.8724 -6.7094 38 1 6.3856 -0.5741 -5.8158 39 1 9.1274 -2.4389 -7.4183 40 1 7.2643 -0.9422 -3.4834 41 1 8.9397 0.7110 -2.7694 42 1 8.2552 3.0143 -2.2422 43 1 5.8955 3.6817 -2.4367 44 1 4.2056 2.0474 -3.1596 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410881441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:43 Heat of formation + Delta-G solvation = 102.430889 kcal Electronic energy + Delta-G solvation = -29140.625356 eV Core-core repulsion = 25253.184888 eV Total energy + Delta-G solvation = -3887.440467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.05844 -39.52696 -38.32300 -37.12814 -35.44587 -34.01737 -32.37308 -31.96258 -31.09519 -30.33109 -28.44879 -27.47819 -27.07023 -24.80521 -23.58479 -22.64918 -22.14843 -21.41376 -19.99934 -18.85964 -17.96818 -17.28985 -16.85395 -16.73993 -15.74663 -15.52396 -15.26596 -14.80176 -14.55162 -14.27681 -14.20968 -13.93554 -13.71677 -13.49164 -13.30182 -13.12530 -12.95823 -12.82138 -12.60449 -12.46013 -12.36887 -12.26349 -12.11845 -12.04934 -11.71982 -11.51858 -11.21855 -11.01826 -10.93042 -10.55986 -10.41549 -10.28901 -9.99264 -9.49583 -9.16543 -8.98404 -8.76957 -8.40734 -8.24356 -7.83857 -6.39551 -4.48111 1.34537 1.93337 2.15380 2.30060 2.55609 2.71628 3.11130 3.13425 3.20836 3.22929 3.31118 3.48412 3.72989 4.17299 4.30378 4.63400 4.74940 4.86404 4.93657 4.95980 5.05500 5.26477 5.29398 5.36582 5.39785 5.44238 5.56492 5.57817 5.66038 5.74628 5.76526 5.95114 5.98710 6.16838 6.29518 6.41099 6.58264 6.66929 6.85649 6.89481 6.98542 7.05962 7.08857 7.25371 7.33437 7.42820 7.48367 7.67754 7.70456 8.24120 8.32753 8.56449 9.18182 10.68152 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.003958 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.441076 B = 7072.914149 C = 7966.412163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.237 3.763 3 H 0.143 0.857 4 C 0.197 3.803 5 N -0.420 5.420 6 N -0.612 5.612 7 C 0.073 3.927 8 C 0.612 3.388 9 O -0.536 6.536 10 C -0.316 4.316 11 C 0.056 3.944 12 N -0.289 5.289 13 N -0.305 5.305 14 C 0.251 3.749 15 C -0.543 4.543 16 H 0.066 0.934 17 C 0.072 3.928 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.199 3.801 24 C -0.058 4.058 25 C -0.079 4.079 26 C -0.135 4.135 27 C -0.109 4.109 28 C -0.141 4.141 29 C -0.065 4.065 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.182 0.818 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.270 0.730 40 H 0.151 0.849 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.961 6.481 9.370 16.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.130 3.870 3 H 0.160 0.840 4 C -0.122 4.122 5 N -0.097 5.097 6 N -0.346 5.346 7 C -0.069 4.069 8 C 0.405 3.595 9 O -0.414 6.414 10 C -0.332 4.332 11 C -0.130 4.130 12 N -0.109 5.109 13 N -0.081 5.081 14 C 0.133 3.867 15 C -0.581 4.581 16 H 0.084 0.916 17 C -0.133 4.133 18 N -0.519 5.519 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.195 1.195 23 C 0.063 3.937 24 C -0.060 4.060 25 C -0.097 4.097 26 C -0.153 4.153 27 C -0.128 4.128 28 C -0.159 4.159 29 C -0.084 4.084 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.199 0.801 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.168 0.832 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.838 5.447 9.515 15.416 hybrid contribution 0.522 -0.243 0.578 0.816 sum -10.316 5.204 10.092 15.341 Atomic orbital electron populations 1.22114 0.91546 1.03672 1.04077 1.18371 0.95049 0.96954 0.76620 0.84004 1.29687 0.93533 0.94106 0.94921 1.81199 1.08258 1.08524 1.11700 1.47631 1.52639 1.13108 1.21256 1.22072 1.01866 0.81006 1.02000 1.17355 0.75747 0.85722 0.80721 1.90656 1.59352 1.15133 1.76213 1.19619 0.98085 1.09478 1.05978 1.23889 0.99674 0.95303 0.94114 1.77138 0.93497 1.17524 1.22748 1.49621 1.13495 1.22930 1.22063 1.19928 0.78363 0.99470 0.88890 1.21186 1.03572 1.24366 1.08951 0.91553 1.24896 0.97671 0.96117 0.94620 1.69909 1.25528 1.41401 1.15102 0.86402 0.79821 0.81250 0.79595 1.20155 1.20707 1.19502 1.19711 0.93287 0.91513 0.89215 1.18036 0.91673 0.92436 1.03813 1.21966 0.91452 1.01842 0.94472 1.21026 0.99465 0.93447 1.01340 1.21245 0.96117 0.96198 0.99208 1.20974 0.93042 0.99415 1.02486 1.21749 1.00836 0.91316 0.94526 0.90576 0.91432 0.89827 0.91672 0.89567 0.91629 0.80075 0.92401 0.92407 0.91996 0.83163 0.86147 0.86661 0.86333 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.15 37.16 0.34 -0.56 16 2 C 0.24 2.17 3.09 -70.72 -0.22 1.95 16 3 H 0.14 1.32 6.90 -51.93 -0.36 0.97 16 4 C 0.20 2.25 13.91 -20.76 -0.29 1.96 16 5 N -0.42 -5.88 18.54 42.15 0.78 -5.10 16 6 N -0.61 -6.85 2.74 -178.53 -0.49 -7.33 16 7 C 0.07 0.67 8.01 59.85 0.48 1.15 16 8 C 0.61 9.09 7.48 -12.64 -0.09 9.00 16 9 O -0.54 -8.70 12.21 5.25 0.06 -8.64 16 10 C -0.32 -5.38 5.42 -104.75 -0.57 -5.95 16 11 C 0.06 0.89 9.69 -17.06 -0.17 0.72 16 12 N -0.29 -5.81 12.48 30.82 0.38 -5.43 16 13 N -0.31 -6.62 3.59 -58.19 -0.21 -6.83 16 14 C 0.25 6.04 5.42 -5.19 -0.03 6.01 16 15 C -0.54 -13.78 7.23 -34.44 -0.25 -14.03 16 16 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 17 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.88 -23.59 13.29 55.43 0.74 -22.86 16 19 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 C 0.20 3.96 6.50 -82.07 -0.53 3.42 16 24 C -0.06 -1.11 5.32 -104.99 -0.56 -1.67 16 25 C -0.08 -1.54 8.64 -39.17 -0.34 -1.88 16 26 C -0.13 -2.27 10.03 -39.64 -0.40 -2.67 16 27 C -0.11 -1.63 10.04 -39.49 -0.40 -2.03 16 28 C -0.14 -2.14 10.03 -39.64 -0.40 -2.54 16 29 C -0.07 -1.13 8.15 -39.17 -0.32 -1.45 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.35 7.67 -51.93 -0.40 -0.05 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.43 7.26 -51.93 -0.38 0.05 16 34 H 0.09 0.96 5.86 -51.93 -0.30 0.65 16 35 H 0.06 0.54 7.28 -51.93 -0.38 0.16 16 36 H 0.18 2.05 6.14 -52.48 -0.32 1.73 16 37 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.06 1.44 7.32 -51.93 -0.38 1.06 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 40 H 0.15 3.26 5.56 -52.49 -0.29 2.97 16 41 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 42 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 43 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 44 H 0.15 2.55 5.64 -52.49 -0.30 2.26 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -30.22 371.66 -7.17 -37.39 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.19 Total: 5.01 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -3.83 Total: -6.82 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 1.20 Total: -47.55 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.06 Total: -8.64 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.22 -7.17 -37.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410881441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.821 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds