Wall clock time and date at job start Tue Mar 31 2020 21:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46941 * 2 1 4 4 C 1.47193 * 109.47020 * 120.00168 * 2 1 3 5 5 N 2.60794 * 109.47214 * 120.00379 * 2 1 3 6 6 N 1.46503 * 109.47218 * 240.00687 * 2 1 3 7 7 C 1.46503 * 119.99553 * 299.99987 * 6 2 1 8 8 C 1.34771 * 120.00209 * 120.00017 * 6 2 1 9 9 O 1.21634 * 120.00001 * 355.79826 * 8 6 2 10 10 C 1.47171 * 119.99690 * 175.80520 * 8 6 2 11 11 C 1.41087 * 126.48698 * 35.63715 * 10 8 6 12 12 N 1.30457 * 108.30674 * 179.87611 * 11 10 8 13 13 N 1.39911 * 109.21965 * 0.38783 * 12 11 10 14 14 C 1.46493 * 125.80819 * 179.77751 * 13 12 11 15 15 C 1.50710 * 109.47008 * 269.96744 * 14 13 12 16 16 H 1.08004 * 119.99505 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00012 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00440 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47062 * 90.00223 * 19 17 15 21 21 H 1.48499 * 109.47273 * 210.00219 * 19 17 15 22 22 H 1.48499 * 109.46920 * 330.00282 * 19 17 15 23 23 C 1.35183 * 108.38232 * 359.74561 * 13 12 11 24 24 C 1.47735 * 126.46768 * 179.97438 * 23 13 12 25 25 C 1.39611 * 120.15285 * 314.70766 * 24 23 13 26 26 C 1.37950 * 119.84830 * 179.70249 * 25 24 23 27 27 C 1.38362 * 120.14839 * 0.57302 * 26 25 24 28 28 C 1.38362 * 120.30014 * 359.72306 * 27 26 25 29 29 C 1.37948 * 120.15271 * 359.97438 * 28 27 26 30 30 H 1.09007 * 109.46894 * 300.00148 * 1 2 3 31 31 H 1.08996 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46723 * 59.99485 * 1 2 3 33 33 H 1.08996 * 109.47253 * 95.48671 * 7 6 2 34 34 H 1.08996 * 109.46920 * 215.48901 * 7 6 2 35 35 H 1.09004 * 109.47007 * 335.48472 * 7 6 2 36 36 H 1.08003 * 125.84202 * 0.02562 * 11 10 8 37 37 H 1.08995 * 109.47834 * 29.96691 * 14 13 12 38 38 H 1.09003 * 109.47338 * 149.97652 * 14 13 12 39 39 H 0.96997 * 120.00233 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.07272 * 359.97438 * 25 24 23 41 41 H 1.07999 * 119.92896 * 180.30048 * 26 25 24 42 42 H 1.08009 * 119.85058 * 179.70086 * 27 26 25 43 43 H 1.08003 * 119.92572 * 180.02562 * 28 27 26 44 44 H 1.07994 * 120.08034 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 1.2018 5 7 2.3994 -1.2295 2.1293 6 7 2.0184 -0.6905 -1.1963 7 6 1.6644 -2.0931 -1.4282 8 6 2.7932 -0.0354 -2.0833 9 8 3.0242 1.1490 -1.9309 10 6 3.3597 -0.7533 -3.2365 11 6 2.7398 -1.7890 -3.9670 12 7 3.5541 -2.1669 -4.9135 13 7 4.7294 -1.4115 -4.8389 14 6 5.8886 -1.5399 -5.7253 15 6 6.8507 -2.5479 -5.1512 16 1 6.6216 -3.0429 -4.2190 17 6 8.0232 -2.8381 -5.8159 18 7 8.3024 -2.2350 -6.9508 19 14 9.2154 -4.0881 -5.1047 20 1 8.8802 -5.4402 -5.6190 21 1 10.6007 -3.7351 -5.5063 22 1 9.1128 -4.0825 -3.6232 23 6 4.6129 -0.5424 -3.8100 24 6 5.6231 0.4439 -3.3751 25 6 6.9630 0.0700 -3.2571 26 6 7.9021 0.9977 -2.8564 27 6 7.5167 2.2931 -2.5602 28 6 6.1895 2.6688 -2.6690 29 6 5.2411 1.7528 -3.0746 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 0.7929 -2.1447 -2.0808 34 1 2.5025 -2.6060 -1.8998 35 1 1.4345 -2.5719 -0.4763 36 1 1.7582 -2.1972 -3.7767 37 1 5.5585 -1.8724 -6.7094 38 1 6.3856 -0.5741 -5.8158 39 1 9.1274 -2.4389 -7.4183 40 1 7.2643 -0.9422 -3.4834 41 1 8.9397 0.7110 -2.7694 42 1 8.2552 3.0143 -2.2422 43 1 5.8955 3.6817 -2.4367 44 1 4.2056 2.0474 -3.1596 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000410881441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:42 Heat of formation + Delta-G solvation = 85.477581 kcal Electronic energy + Delta-G solvation = -29141.360506 eV Core-core repulsion = 25253.184888 eV Total energy + Delta-G solvation = -3888.175618 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.43413 -40.63315 -39.64537 -38.14538 -36.45406 -35.82894 -33.89986 -33.16167 -32.30374 -31.65603 -29.78957 -29.14841 -27.94287 -25.91634 -25.05714 -24.02448 -23.50166 -22.64632 -21.37526 -20.17182 -18.89220 -18.84675 -18.46733 -17.93384 -16.94003 -16.78212 -16.53003 -16.46239 -15.90820 -15.47450 -15.27948 -15.08926 -15.02505 -14.88993 -14.39425 -14.27851 -14.10449 -14.01703 -13.90807 -13.64811 -13.55556 -13.49328 -13.20540 -13.03018 -12.93182 -12.76693 -12.75684 -12.35739 -12.23884 -12.17630 -11.92626 -11.81574 -11.71338 -10.76635 -10.72700 -10.63358 -9.92797 -9.78668 -9.70349 -9.21158 -8.37545 -6.52830 -0.02215 0.59373 0.97894 1.19052 1.34294 1.34878 1.38340 1.46179 1.65819 1.68684 2.17212 2.30155 2.39481 2.85088 2.93572 2.97304 3.51588 3.64322 3.95920 4.06951 4.11453 4.19312 4.20412 4.29695 4.34946 4.39082 4.60457 4.65182 4.70186 4.79690 4.83516 4.84666 4.92702 4.98522 5.00130 5.09464 5.25668 5.34432 5.45008 5.47368 5.58704 5.65136 5.67738 5.71912 5.74282 6.00066 6.14233 6.23483 6.40994 6.54135 6.82056 7.16113 7.16966 8.70387 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.003958 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.441076 B = 7072.914149 C = 7966.412163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.238 3.762 3 H 0.143 0.857 4 C 0.220 3.780 5 N -0.468 5.468 6 N -0.603 5.603 7 C 0.066 3.934 8 C 0.613 3.387 9 O -0.551 6.551 10 C -0.312 4.312 11 C 0.080 3.920 12 N -0.329 5.329 13 N -0.333 5.333 14 C 0.273 3.727 15 C -0.544 4.544 16 H 0.053 0.947 17 C 0.030 3.970 18 N -0.913 5.913 19 Si 0.963 3.037 20 H -0.273 1.273 21 H -0.272 1.272 22 H -0.269 1.269 23 C 0.177 3.823 24 C -0.079 4.079 25 C -0.107 4.107 26 C -0.142 4.142 27 C -0.100 4.100 28 C -0.134 4.134 29 C -0.071 4.071 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.231 0.769 37 H 0.030 0.970 38 H 0.039 0.961 39 H 0.274 0.726 40 H 0.118 0.882 41 H 0.133 0.867 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 7.515 11.214 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.132 3.868 3 H 0.161 0.839 4 C -0.099 4.099 5 N -0.145 5.145 6 N -0.337 5.337 7 C -0.076 4.076 8 C 0.404 3.596 9 O -0.430 6.430 10 C -0.327 4.327 11 C -0.105 4.105 12 N -0.149 5.149 13 N -0.109 5.109 14 C 0.154 3.846 15 C -0.582 4.582 16 H 0.071 0.929 17 C -0.172 4.172 18 N -0.551 5.551 19 Si 0.787 3.213 20 H -0.198 1.198 21 H -0.197 1.197 22 H -0.194 1.194 23 C 0.043 3.957 24 C -0.081 4.081 25 C -0.126 4.126 26 C -0.160 4.160 27 C -0.118 4.118 28 C -0.152 4.152 29 C -0.090 4.090 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.247 0.753 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.151 0.849 42 H 0.173 0.827 43 H 0.172 0.828 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.395 6.471 11.387 18.032 hybrid contribution 0.890 -0.489 0.099 1.020 sum -11.505 5.982 11.486 17.323 Atomic orbital electron populations 1.22124 0.88181 1.04864 1.05418 1.18732 0.97322 0.96144 0.74627 0.83934 1.30068 0.92169 0.92990 0.94671 1.81230 1.09860 1.10102 1.13305 1.47595 1.51342 1.13829 1.20900 1.22278 1.02342 0.79508 1.03499 1.17056 0.76276 0.85469 0.80817 1.90639 1.60129 1.15735 1.76532 1.19956 0.97054 1.09268 1.06426 1.24643 1.00404 0.93740 0.91751 1.77075 0.93808 1.18920 1.25060 1.49299 1.13686 1.24814 1.23112 1.19309 0.79153 0.97924 0.88197 1.21236 1.04243 1.24398 1.08352 0.92920 1.25626 0.99023 0.97688 0.94825 1.69998 1.26178 1.42711 1.16185 0.85481 0.78087 0.78968 0.78807 1.19795 1.19711 1.19403 1.20188 0.94793 0.91572 0.89152 1.18218 0.91531 0.93431 1.04910 1.21800 0.92578 1.01197 0.96980 1.21268 0.99621 0.94113 1.01031 1.21642 0.96950 0.95747 0.97422 1.21406 0.92706 1.00468 1.00629 1.21845 1.01461 0.90812 0.94890 0.88894 0.90333 0.88830 0.88068 0.91648 0.90285 0.75266 0.95193 0.94289 0.91702 0.86376 0.84875 0.82728 0.82836 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.15 71.98 0.66 -0.46 16 2 C 0.24 3.69 3.09 43.18 0.13 3.83 16 3 H 0.14 2.30 6.90 -2.39 -0.02 2.29 16 4 C 0.22 4.59 13.91 89.44 1.24 5.83 16 5 N -0.47 -12.56 18.54 20.00 0.37 -12.19 16 6 N -0.60 -11.99 2.74 -837.00 -2.29 -14.28 16 7 C 0.07 1.00 8.01 127.77 1.02 2.03 16 8 C 0.61 17.32 7.48 86.59 0.65 17.97 16 9 O -0.55 -17.16 12.21 -4.14 -0.05 -17.21 16 10 C -0.31 -10.54 5.42 -19.95 -0.11 -10.65 16 11 C 0.08 2.48 9.69 85.60 0.83 3.31 16 12 N -0.33 -13.59 12.48 -56.41 -0.70 -14.29 16 13 N -0.33 -15.27 3.59 -338.02 -1.21 -16.48 16 14 C 0.27 14.15 5.42 85.64 0.46 14.61 16 15 C -0.54 -29.27 7.23 25.60 0.19 -29.08 16 16 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 17 C 0.03 1.61 5.46 84.65 0.46 2.07 16 18 N -0.91 -50.66 13.29 21.44 0.28 -50.38 16 19 Si 0.96 42.08 29.54 68.60 2.03 44.11 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 C 0.18 7.34 6.50 41.43 0.27 7.61 16 24 C -0.08 -3.16 5.32 -20.10 -0.11 -3.26 16 25 C -0.11 -4.37 8.64 22.53 0.19 -4.18 16 26 C -0.14 -4.80 10.03 22.23 0.22 -4.58 16 27 C -0.10 -2.75 10.04 22.33 0.22 -2.53 16 28 C -0.13 -3.79 10.03 22.23 0.22 -3.56 16 29 C -0.07 -2.44 8.15 22.54 0.18 -2.26 16 30 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.08 0.47 7.67 -2.39 -0.02 0.45 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.86 7.26 -2.39 -0.02 0.85 16 34 H 0.06 1.32 5.86 -2.39 -0.01 1.31 16 35 H 0.08 1.04 7.28 -2.39 -0.02 1.02 16 36 H 0.23 4.46 6.14 -2.91 -0.02 4.44 16 37 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 2.12 7.32 -2.39 -0.02 2.11 16 39 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 40 H 0.12 5.55 5.56 -2.91 -0.02 5.53 16 41 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 42 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 43 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 44 H 0.15 5.03 5.64 -2.91 -0.02 5.02 16 Total: -1.00 -70.60 371.66 6.22 -64.38 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.05 Total: 19.64 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 6.75 Total: -3.29 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -3.55 Total: -107.62 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.05 Total: -17.21 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -70.60 6.22 -64.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410881441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.853 kcal (2) G-P(sol) polarization free energy of solvation -70.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds