Wall clock time and date at job start Tue Mar 31 2020 21:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46500 * 120.00093 * 84.99670 * 3 2 1 5 5 C 1.50704 * 109.47042 * 85.00143 * 4 3 2 6 6 H 1.07997 * 119.99702 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99826 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00105 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99848 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47005 * 59.99914 * 9 7 5 11 11 H 1.48498 * 109.47150 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47249 * 299.99803 * 9 7 5 13 13 S 1.65595 * 120.00153 * 265.00098 * 3 2 1 14 14 O 1.42098 * 106.40657 * 203.53897 * 13 3 2 15 15 O 1.42101 * 106.39911 * 336.45710 * 13 3 2 16 16 N 1.65601 * 107.21959 * 89.99593 * 13 3 2 17 17 C 1.46498 * 120.00128 * 65.00152 * 16 13 3 18 18 H 1.09004 * 115.54682 * 359.32780 * 17 16 13 19 19 C 1.53001 * 117.50178 * 213.62277 * 17 16 13 20 20 C 1.52998 * 117.50247 * 144.99830 * 17 16 13 21 21 H 1.09006 * 117.49758 * 359.97438 * 20 17 16 22 22 C 1.50697 * 117.50282 * 214.98270 * 20 17 16 23 23 C 1.38232 * 119.99501 * 299.72770 * 22 20 17 24 24 C 1.38239 * 119.99798 * 179.80826 * 23 22 20 25 25 C 1.38240 * 119.99801 * 0.42015 * 24 23 22 26 26 C 1.50702 * 119.99990 * 179.78993 * 25 24 23 27 27 C 1.38230 * 120.00077 * 359.81005 * 25 24 23 28 28 C 1.38236 * 120.00061 * 119.99750 * 22 20 17 29 29 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 33 33 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 34 34 H 1.08992 * 109.47129 * 205.00335 * 4 3 2 35 35 H 1.09005 * 109.47162 * 325.00740 * 4 3 2 36 36 H 0.96998 * 119.99882 * 180.02562 * 8 7 5 37 37 H 0.97003 * 119.99661 * 245.00345 * 16 13 3 38 38 H 1.09000 * 117.49411 * 359.97438 * 19 17 16 39 39 H 1.08997 * 117.49784 * 145.01619 * 19 17 16 40 40 H 1.08000 * 120.00359 * 359.97438 * 23 22 20 41 41 H 1.07996 * 120.00544 * 180.20738 * 24 23 22 42 42 H 1.08994 * 109.46888 * 270.02224 * 26 25 24 43 43 H 1.08996 * 109.46785 * 30.02222 * 26 25 24 44 44 H 1.08999 * 109.46890 * 150.02300 * 26 25 24 45 45 H 1.07998 * 120.00835 * 179.97438 * 27 25 24 46 46 H 1.07998 * 119.99960 * 359.97438 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1088 1.2639 5 6 3.4948 1.7889 1.8824 6 1 4.1723 1.1118 1.3836 7 6 3.8524 2.3607 3.0849 8 7 3.0275 3.1856 3.6920 9 14 5.5094 1.9647 3.8512 10 1 6.5943 2.3731 2.9230 11 1 5.6512 2.7020 5.1324 12 1 5.6003 0.5048 4.1071 13 16 2.4122 2.1202 -1.4286 14 8 3.3284 3.1571 -1.1049 15 8 2.7096 1.0799 -2.3498 16 7 1.0431 2.8642 -1.9894 17 6 0.4513 3.9730 -1.2368 18 1 0.9643 4.2409 -0.3131 19 6 -1.0720 4.1129 -1.2655 20 6 -0.1981 5.1034 -2.0376 21 1 -0.1847 5.0223 -3.1245 22 6 -0.0801 6.5019 -1.4888 23 6 -0.6023 6.8024 -0.2447 24 6 -0.4906 8.0844 0.2605 25 6 0.1358 9.0678 -0.4822 26 6 0.2534 10.4664 0.0665 27 6 0.6537 8.7684 -1.7283 28 6 0.5455 7.4855 -2.2318 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.0921 3.1803 1.0756 35 1 1.3617 1.8097 1.9453 36 1 3.2793 3.5882 4.5378 37 1 0.6331 2.5658 -2.8163 38 1 -1.6338 3.3801 -1.8447 39 1 -1.5615 4.4727 -0.3605 40 1 -1.0953 6.0351 0.3338 41 1 -0.8956 8.3184 1.2339 42 1 -0.6174 11.0490 -0.2339 43 1 0.3062 10.4266 1.1545 44 1 1.1566 10.9352 -0.3242 45 1 1.1427 9.5367 -2.3088 46 1 0.9499 7.2516 -3.2055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565889604.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:08 Heat of formation + Delta-G solvation = -35.382870 kcal Electronic energy + Delta-G solvation = -27736.864772 eV Core-core repulsion = 23946.599452 eV Total energy + Delta-G solvation = -3790.265320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.75649 -37.59060 -36.61228 -36.03299 -35.16474 -33.24224 -32.66206 -31.38584 -30.77248 -29.98722 -26.98382 -26.59730 -23.17717 -23.12613 -22.24565 -21.95389 -21.70279 -20.13639 -19.00914 -17.49917 -16.80740 -16.49533 -16.24573 -16.05055 -15.39261 -14.98019 -14.94452 -14.37855 -13.94370 -13.83466 -13.77207 -13.35939 -13.32699 -12.99941 -12.76713 -12.39454 -12.26864 -12.13048 -12.06767 -12.00426 -11.77243 -11.66831 -11.60572 -11.36641 -11.32088 -11.09218 -10.99098 -10.90960 -10.89089 -10.51156 -10.41986 -10.26585 -9.98174 -9.76962 -9.12666 -8.85127 -8.43623 -8.21099 -8.06384 -6.06010 -4.09579 1.16601 1.37479 1.47867 3.34380 3.37944 3.41652 3.44946 3.61208 4.08886 4.14659 4.45493 4.61083 4.81066 4.81819 4.92221 4.95547 5.06598 5.09240 5.14684 5.24575 5.34133 5.38912 5.46061 5.49918 5.53351 5.67620 5.72838 5.74841 5.75748 5.80407 6.00923 6.02584 6.12875 6.14746 6.28458 6.33313 6.49711 6.59571 6.63007 6.63978 6.69531 7.06271 7.09460 7.24709 7.41439 7.62845 7.91691 8.21010 8.92266 9.55605 11.02484 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009381 B = 0.004173 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.952650 B = 6707.884067 C = 8484.191033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.989 5.989 4 C 0.259 3.741 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 S 2.780 3.220 14 O -0.960 6.960 15 O -0.998 6.998 16 N -1.104 6.104 17 C 0.114 3.886 18 H 0.142 0.858 19 C -0.181 4.181 20 C -0.128 4.128 21 H 0.114 0.886 22 C -0.052 4.052 23 C -0.113 4.113 24 C -0.115 4.115 25 C -0.095 4.095 26 C -0.113 4.113 27 C -0.119 4.119 28 C -0.109 4.109 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.408 0.592 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.119 0.881 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.873 6.724 -9.717 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 N -0.831 5.831 4 C 0.137 3.863 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.202 1.202 13 S 2.788 3.212 14 O -0.943 6.943 15 O -0.982 6.982 16 N -0.857 5.857 17 C 0.005 3.995 18 H 0.160 0.840 19 C -0.220 4.220 20 C -0.149 4.149 21 H 0.132 0.868 22 C -0.052 4.052 23 C -0.131 4.131 24 C -0.133 4.133 25 C -0.095 4.095 26 C -0.170 4.170 27 C -0.137 4.137 28 C -0.127 4.127 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.240 0.760 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.137 0.863 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.901 6.885 -9.790 16.189 hybrid contribution 0.308 -0.294 0.312 0.528 sum -10.593 6.591 -9.477 15.668 Atomic orbital electron populations 1.22229 0.97184 1.01319 1.02056 1.21140 0.93097 0.83141 1.03487 1.57698 1.80894 1.21449 1.23061 1.19041 0.97415 0.90893 0.78979 1.21452 1.02104 1.27797 1.05535 0.92235 1.24902 0.97289 0.94793 0.96845 1.69899 1.36113 1.30172 1.17240 0.86600 0.84323 0.78403 0.78391 1.20012 1.21190 1.20188 1.02032 0.73292 0.73159 0.72744 1.93645 1.59297 1.57543 1.83787 1.93536 1.83369 1.57370 1.63915 1.55951 1.49195 1.45484 1.35106 1.21512 0.93536 0.87952 0.96538 0.84018 1.23580 0.94000 1.01521 1.02903 1.21556 1.06066 0.88524 0.98708 0.86790 1.19063 0.98277 0.93290 0.94597 1.21086 0.99874 0.96808 0.95362 1.21006 0.99708 0.92905 0.99638 1.19902 0.98714 0.96061 0.94821 1.20772 1.02004 0.92954 1.01231 1.20965 1.00564 0.96568 0.95652 1.20921 0.99003 0.92739 1.00012 0.92348 0.93354 0.91926 0.89713 0.90676 0.94696 0.94620 0.92667 0.75955 0.88067 0.87521 0.85620 0.86044 0.91482 0.91520 0.91688 0.86264 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.94 16 2 C 0.12 2.01 6.40 -4.04 -0.03 1.99 16 3 N -0.99 -20.02 2.82 -115.66 -0.33 -20.34 16 4 C 0.26 6.28 5.10 -5.19 -0.03 6.26 16 5 C -0.53 -14.70 9.38 -34.44 -0.32 -15.02 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.90 -25.72 13.29 55.43 0.74 -24.99 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 S 2.78 54.86 6.08 -107.50 -0.65 54.21 16 14 O -0.96 -23.18 16.87 -57.17 -0.96 -24.15 16 15 O -1.00 -20.65 16.69 -57.17 -0.95 -21.60 16 16 N -1.10 -16.23 6.10 -4.89 -0.03 -16.26 16 17 C 0.11 1.64 6.13 -67.93 -0.42 1.22 16 18 H 0.14 2.44 6.90 -51.93 -0.36 2.08 16 19 C -0.18 -2.01 9.79 -26.73 -0.26 -2.27 16 20 C -0.13 -1.56 5.97 -91.77 -0.55 -2.11 16 21 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 22 C -0.05 -0.68 5.61 -104.63 -0.59 -1.27 16 23 C -0.11 -1.47 9.30 -39.58 -0.37 -1.84 16 24 C -0.11 -1.41 9.70 -39.58 -0.38 -1.80 16 25 C -0.09 -1.12 5.88 -104.62 -0.62 -1.73 16 26 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 27 C -0.12 -1.41 9.70 -39.58 -0.38 -1.80 16 28 C -0.11 -1.37 9.74 -39.58 -0.39 -1.75 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 33 H 0.07 1.23 6.91 -51.93 -0.36 0.87 16 34 H 0.04 0.90 6.40 -51.93 -0.33 0.57 16 35 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 37 H 0.41 4.77 8.96 -34.47 -0.31 4.46 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 1.11 6.17 -51.93 -0.32 0.79 16 40 H 0.13 1.47 6.02 -52.49 -0.32 1.16 16 41 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 44 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 394.01 15.07 5.94 5.94 Total: -1.00 -33.71 394.01 -11.98 -45.69 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.03 Total: 5.75 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -3.68 Total: -21.03 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.38 Total: -61.58 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.92 Total: -45.75 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 54.86 SS G_CDS: -0.65 Total: 54.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.71 -11.98 -45.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565889604.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.306 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds