Wall clock time and date at job start Tue Mar 31 2020 21:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47202 * 2 1 4 4 C 1.46500 * 120.00063 * 275.00396 * 3 2 1 5 5 C 1.50700 * 109.47124 * 276.11700 * 4 3 2 6 6 H 1.08006 * 119.99758 * 4.99828 * 5 4 3 7 7 C 1.37871 * 120.00336 * 184.99085 * 5 4 3 8 8 N 1.31515 * 119.99844 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00282 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47338 * 90.00125 * 9 7 5 11 11 H 1.48502 * 109.46981 * 210.00005 * 9 7 5 12 12 H 1.48497 * 109.47048 * 329.99988 * 9 7 5 13 13 S 1.65605 * 119.99774 * 95.00104 * 3 2 1 14 14 O 1.42101 * 106.40017 * 342.43590 * 13 3 2 15 15 O 1.42101 * 106.39883 * 209.51367 * 13 3 2 16 16 N 1.65595 * 107.21704 * 95.97656 * 13 3 2 17 17 C 1.46500 * 119.99996 * 294.68852 * 16 13 3 18 18 H 1.08997 * 110.26801 * 20.18731 * 17 16 13 19 19 C 1.54353 * 110.30379 * 142.25637 * 17 16 13 20 20 C 1.54344 * 102.39813 * 145.27356 * 19 17 16 21 21 C 1.51365 * 105.17720 * 333.65370 * 20 19 17 22 22 C 1.38267 * 109.74992 * 17.43401 * 21 20 19 23 23 C 1.38455 * 119.84834 * 180.33240 * 22 21 20 24 24 C 1.38144 * 120.21022 * 359.46196 * 23 22 21 25 25 C 1.38205 * 119.94264 * 0.25931 * 24 23 22 26 26 C 1.38158 * 119.92979 * 0.02562 * 25 24 23 27 27 C 1.50698 * 119.89008 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.46961 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47022 * 299.99724 * 1 2 3 30 30 H 1.09000 * 109.47282 * 59.99381 * 1 2 3 31 31 H 1.09001 * 109.47022 * 240.00276 * 2 1 3 32 32 H 1.09003 * 109.47322 * 120.00089 * 2 1 3 33 33 H 1.08995 * 109.47425 * 36.12574 * 4 3 2 34 34 H 1.09005 * 109.46687 * 156.12354 * 4 3 2 35 35 H 0.97003 * 120.00264 * 180.02562 * 8 7 5 36 36 H 0.97005 * 119.99693 * 114.69065 * 16 13 3 37 37 H 1.09004 * 110.81764 * 27.04951 * 19 17 16 38 38 H 1.08997 * 110.82091 * 263.50807 * 19 17 16 39 39 H 1.08999 * 110.29880 * 214.72543 * 20 19 17 40 40 H 1.09000 * 110.30086 * 92.58142 * 20 19 17 41 41 H 1.07992 * 119.89217 * 179.74306 * 23 22 21 42 42 H 1.08007 * 120.02663 * 180.28137 * 24 23 22 43 43 H 1.07997 * 120.04098 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.46883 * 89.99917 * 27 26 25 45 45 H 1.08999 * 109.46861 * 209.99860 * 27 26 25 46 46 H 1.09002 * 109.47281 * 330.00005 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4831 1.7676 -1.8959 6 1 4.1182 1.0179 -1.4475 7 6 3.8844 2.4124 -3.0466 8 7 3.1111 3.3255 -3.5924 9 14 5.5263 1.9891 -3.8304 10 1 5.3384 0.8884 -4.8093 11 1 6.0650 3.1847 -4.5272 12 1 6.4807 1.5578 -2.7777 13 16 2.4122 2.1202 1.4288 14 8 1.7995 1.3557 2.4581 15 8 2.1706 3.5080 1.2426 16 7 4.0471 1.9533 1.6325 17 6 4.6293 0.6228 1.8247 18 1 3.9457 -0.1446 1.4616 19 6 5.9853 0.5209 1.0944 20 6 6.8001 -0.3928 2.0343 21 6 6.1964 -0.1883 3.4072 22 6 4.9464 0.3903 3.2864 23 6 4.2072 0.6769 4.4215 24 6 4.7099 0.3765 5.6726 25 6 5.9569 -0.2071 5.7931 26 6 6.6985 -0.4884 4.6619 27 6 8.0583 -1.1243 4.7944 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.3501 1.8247 -1.9380 34 1 2.1121 3.1809 -1.0729 35 1 3.3932 3.7790 -4.4022 36 1 4.6193 2.7366 1.6245 37 1 6.4527 1.5017 1.0065 38 1 5.8639 0.0592 0.1145 39 1 7.8490 -0.0961 2.0343 40 1 6.7009 -1.4344 1.7288 41 1 3.2325 1.1326 4.3282 42 1 4.1288 0.5973 6.5559 43 1 6.3512 -0.4429 6.7705 44 1 7.9554 -2.2093 4.7757 45 1 8.6909 -0.8050 3.9662 46 1 8.5121 -0.8185 5.7371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567125416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:50 Heat of formation + Delta-G solvation = -84.026206 kcal Electronic energy + Delta-G solvation = -28675.991762 eV Core-core repulsion = 24883.617109 eV Total energy + Delta-G solvation = -3792.374653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24457 -38.33987 -37.71205 -37.40640 -36.90151 -34.67447 -34.49391 -33.18872 -31.52823 -29.89895 -28.48939 -27.74897 -27.00673 -24.93994 -23.29328 -23.03543 -21.92146 -21.19787 -20.44599 -18.70162 -18.57775 -18.21156 -17.65970 -17.03037 -16.73199 -16.28890 -16.04557 -15.80195 -15.46645 -15.11656 -14.74759 -14.65803 -14.45275 -14.02607 -13.91922 -13.74081 -13.65777 -13.53457 -13.33728 -13.15757 -13.06571 -13.04189 -13.00536 -12.77680 -12.70859 -12.63988 -12.39018 -12.23753 -12.12865 -12.02574 -11.83887 -11.70179 -11.65348 -11.57514 -10.57890 -10.48150 -9.79527 -9.50291 -9.40217 -8.13178 -6.26969 -0.29666 0.44790 0.48816 1.46698 1.47459 1.57528 1.98953 2.46144 2.58922 2.84044 3.19215 3.43175 3.44574 3.62751 3.87155 4.01875 4.07981 4.18542 4.20471 4.29295 4.36478 4.41746 4.47524 4.52077 4.69556 4.75078 4.83478 4.86037 4.91163 4.96656 4.99807 5.05032 5.13049 5.14311 5.21126 5.26873 5.31234 5.39161 5.40932 5.53142 5.63499 5.66476 5.76094 5.78945 5.91188 6.12764 6.14044 6.17945 6.86051 7.43526 8.95219 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011808 B = 0.004722 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.792503 B = 5928.501421 C = 7452.428695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.994 5.994 4 C 0.261 3.739 5 C -0.535 4.535 6 H 0.079 0.921 7 C 0.008 3.992 8 N -0.933 5.933 9 Si 0.959 3.041 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.251 1.251 13 S 2.795 3.205 14 O -0.997 6.997 15 O -1.025 7.025 16 N -1.107 6.107 17 C 0.195 3.805 18 H 0.094 0.906 19 C -0.122 4.122 20 C -0.073 4.073 21 C -0.097 4.097 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.129 4.129 25 C -0.119 4.119 26 C -0.085 4.085 27 C -0.110 4.110 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.263 0.737 36 H 0.418 0.582 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.138 0.862 43 H 0.149 0.851 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.149 -11.834 14.773 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.836 5.836 4 C 0.137 3.863 5 C -0.574 4.574 6 H 0.097 0.903 7 C -0.191 4.191 8 N -0.573 5.573 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.219 1.219 12 H -0.175 1.175 13 S 2.804 3.196 14 O -0.981 6.981 15 O -1.009 7.009 16 N -0.866 5.866 17 C 0.088 3.912 18 H 0.112 0.888 19 C -0.161 4.161 20 C -0.110 4.110 21 C -0.097 4.097 22 C -0.126 4.126 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.137 4.137 26 C -0.085 4.085 27 C -0.166 4.166 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.253 0.747 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.156 0.844 43 H 0.166 0.834 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.382 -11.429 15.213 20.792 hybrid contribution 0.427 0.757 -1.094 1.397 sum 8.809 -10.672 14.119 19.770 Atomic orbital electron populations 1.22189 0.95934 1.03300 1.01267 1.21317 0.94764 0.81342 1.03291 1.57614 1.79282 1.23973 1.22690 1.18725 0.96731 0.90628 0.80177 1.21857 1.04016 1.22106 1.09432 0.90254 1.25853 1.00865 0.94642 0.97716 1.70090 1.39317 1.26625 1.21268 0.85532 0.79773 0.77351 0.78927 1.20096 1.21941 1.17476 1.01239 0.73534 0.71971 0.72849 1.93526 1.75888 1.72666 1.55980 1.93528 1.85161 1.35202 1.87006 1.55766 1.27325 1.14518 1.88997 1.20296 0.97026 0.82850 0.91015 0.88809 1.22654 0.92928 1.01453 0.99073 1.21054 1.00110 1.00829 0.88983 1.20628 0.94583 0.99010 0.95527 1.20965 0.96101 1.00541 0.95012 1.20908 0.99859 1.00682 0.92642 1.21276 0.96894 0.99699 0.96849 1.21270 0.94235 0.99169 0.99033 1.19786 0.98019 0.99404 0.91269 1.20804 0.91643 1.00721 1.03474 0.88942 0.93676 0.93272 0.89640 0.89825 0.96390 0.96793 0.92766 0.74697 0.90138 0.89304 0.88707 0.88423 0.87389 0.84450 0.83362 0.90240 0.90948 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 10.24 71.98 0.74 -4.42 16 2 C 0.12 3.94 5.95 86.38 0.51 4.46 16 3 N -0.99 -40.75 2.83 -519.84 -1.47 -42.22 16 4 C 0.26 13.09 5.45 85.63 0.47 13.56 16 5 C -0.53 -26.97 9.37 25.60 0.24 -26.73 16 6 H 0.08 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.01 0.43 5.46 84.65 0.46 0.90 16 8 N -0.93 -53.86 13.29 21.45 0.28 -53.58 16 9 Si 0.96 40.66 29.54 68.60 2.03 42.68 16 10 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 13 S 2.80 113.13 6.02 -56.49 -0.34 112.79 16 14 O -1.00 -39.89 15.20 -128.00 -1.95 -41.84 16 15 O -1.02 -50.17 16.82 -128.00 -2.15 -52.33 16 16 N -1.11 -37.42 5.55 -169.70 -0.94 -38.36 16 17 C 0.20 5.68 3.43 44.92 0.15 5.83 16 18 H 0.09 2.71 6.98 -2.39 -0.02 2.69 16 19 C -0.12 -3.01 6.77 31.51 0.21 -2.80 16 20 C -0.07 -1.41 6.27 30.52 0.19 -1.22 16 21 C -0.10 -2.25 6.00 -19.60 -0.12 -2.37 16 22 C -0.12 -3.51 5.80 -19.59 -0.11 -3.62 16 23 C -0.12 -3.60 10.00 22.30 0.22 -3.38 16 24 C -0.13 -3.05 10.04 22.24 0.22 -2.83 16 25 C -0.12 -2.36 9.69 22.24 0.22 -2.14 16 26 C -0.08 -1.69 5.88 -19.84 -0.12 -1.81 16 27 C -0.11 -1.43 9.87 71.24 0.70 -0.73 16 28 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 2.76 8.11 -2.39 -0.02 2.74 16 32 H 0.08 2.46 6.59 -2.39 -0.02 2.45 16 33 H 0.02 0.95 8.11 -2.39 -0.02 0.93 16 34 H 0.01 0.81 6.99 -2.38 -0.02 0.79 16 35 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.42 13.36 8.74 -96.74 -0.85 12.52 16 37 H 0.08 2.01 7.93 -2.38 -0.02 1.99 16 38 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.09 1.50 7.62 -2.39 -0.02 1.48 16 40 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.11 3.58 6.54 -2.91 -0.02 3.56 16 42 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 43 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.87 7.29 -2.39 -0.02 0.85 16 46 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 Total: -1.00 -68.83 384.85 -0.41 -69.23 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.14 Total: 30.91 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 4.00 Total: -27.30 kcal Atomic # 7 Polarization: -132.03 SS G_CDS: -2.13 Total: -134.15 kcal Atomic # 8 Polarization: -90.06 SS G_CDS: -4.10 Total: -94.16 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.68 kcal Atomic # 16 Polarization: 113.13 SS G_CDS: -0.34 Total: 112.79 kcal Total: -68.83 -0.41 -69.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567125416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.795 kcal (2) G-P(sol) polarization free energy of solvation -68.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds