Wall clock time and date at job start Tue Mar 31 2020 21:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46912 * 2 1 4 4 C 1.46506 * 120.00239 * 85.00063 * 3 2 1 5 5 C 1.50695 * 109.46747 * 274.72228 * 4 3 2 6 6 H 1.07999 * 120.00684 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00101 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00215 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99744 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47160 * 89.99643 * 9 7 5 11 11 H 1.48495 * 109.46933 * 210.00161 * 9 7 5 12 12 H 1.48497 * 109.47066 * 329.99916 * 9 7 5 13 13 S 1.65597 * 119.99910 * 264.71837 * 3 2 1 14 14 O 1.42101 * 106.40154 * 23.82013 * 13 3 2 15 15 O 1.42106 * 106.40098 * 156.73670 * 13 3 2 16 16 N 1.65596 * 107.22389 * 270.27980 * 13 3 2 17 17 C 1.46498 * 119.99862 * 64.99463 * 16 13 3 18 18 H 1.09002 * 110.26997 * 337.07866 * 17 16 13 19 19 C 1.54349 * 110.30355 * 215.00596 * 17 16 13 20 20 C 1.54356 * 102.39634 * 214.72015 * 19 17 16 21 21 C 1.51372 * 105.17208 * 26.35424 * 20 19 17 22 22 C 1.38260 * 109.75114 * 342.81362 * 21 20 19 23 23 C 1.38453 * 119.85468 * 179.97438 * 22 21 20 24 24 C 1.38149 * 120.20972 * 359.97438 * 23 22 21 25 25 C 1.38210 * 119.93579 * 0.02562 * 24 23 22 26 26 C 1.38147 * 119.93361 * 0.02562 * 25 24 23 27 27 C 1.50705 * 119.89062 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.46839 * 300.00375 * 1 2 3 29 29 H 1.09003 * 109.46803 * 60.00131 * 1 2 3 30 30 H 1.08994 * 109.47095 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47056 * 239.99618 * 2 1 3 32 32 H 1.09003 * 109.46803 * 119.99869 * 2 1 3 33 33 H 1.08999 * 109.47194 * 34.71912 * 4 3 2 34 34 H 1.08998 * 109.47440 * 154.72121 * 4 3 2 35 35 H 0.97008 * 120.00034 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99918 * 245.00321 * 16 13 3 37 37 H 1.08992 * 110.81868 * 332.94452 * 19 17 16 38 38 H 1.09001 * 110.81992 * 96.49635 * 19 17 16 39 39 H 1.09000 * 110.30093 * 145.27268 * 20 19 17 40 40 H 1.08994 * 110.30269 * 267.32981 * 20 19 17 41 41 H 1.08003 * 119.89629 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.03338 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.03182 * 180.02562 * 25 24 23 44 44 H 1.08992 * 109.47241 * 269.94729 * 27 26 25 45 45 H 1.09002 * 109.46665 * 29.94194 * 27 26 25 46 46 H 1.08991 * 109.47149 * 149.94211 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1088 1.2639 5 6 0.8377 2.7345 1.6321 6 1 -0.0201 2.6031 0.9892 7 6 0.7243 3.4740 2.7903 8 7 -0.4280 4.0205 3.1113 9 14 2.2078 3.7008 3.9026 10 1 2.9524 4.9184 3.4926 11 1 1.7541 3.8479 5.3089 12 1 3.0962 2.5162 3.7906 13 16 2.4188 2.1178 -1.4280 14 8 1.6931 1.4417 -2.4456 15 8 2.3175 3.5168 -1.2001 16 7 4.0204 1.8046 -1.7091 17 6 4.4665 0.4302 -1.9505 18 1 3.7543 -0.2779 -1.5269 19 6 5.8682 0.2078 -1.3435 20 6 6.5146 -0.7668 -2.3510 21 6 5.8112 -0.5026 -3.6650 22 6 4.6342 0.1855 -3.4348 23 6 3.8219 0.5371 -4.4995 24 6 4.1841 0.2031 -5.7901 25 6 5.3606 -0.4847 -6.0202 26 6 6.1719 -0.8373 -4.9590 27 6 7.4548 -1.5867 -5.2111 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.4642 1.4175 2.0491 34 1 2.9115 2.8887 1.1528 35 1 -0.5077 4.5411 3.9260 36 1 4.6631 2.5311 -1.7139 37 1 6.4241 1.1442 -1.2991 38 1 5.7949 -0.2479 -0.3561 39 1 7.5809 -0.5614 -2.4449 40 1 6.3550 -1.7978 -2.0354 41 1 2.9022 1.0742 -4.3204 42 1 3.5485 0.4791 -6.6185 43 1 5.6455 -0.7462 -7.0286 44 1 7.2610 -2.6588 -5.1823 45 1 7.8479 -1.3147 -6.1907 46 1 8.1834 -1.3284 -4.4427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567125417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:54 Heat of formation + Delta-G solvation = -55.361986 kcal Electronic energy + Delta-G solvation = -28382.261311 eV Core-core repulsion = 24591.129632 eV Total energy + Delta-G solvation = -3791.131679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.43510 -36.83427 -36.49432 -36.18687 -35.22432 -33.63840 -32.52102 -32.34116 -30.09543 -29.13000 -27.24782 -27.01084 -26.19760 -22.61513 -22.26204 -21.76903 -21.11605 -20.35328 -19.14652 -17.17995 -17.11866 -16.77316 -16.45093 -15.98711 -15.48278 -15.19628 -14.98065 -14.41822 -14.16580 -13.80557 -13.67969 -13.37230 -13.20023 -13.06074 -12.89811 -12.56210 -12.46308 -12.44661 -12.31520 -12.01685 -11.92956 -11.58737 -11.54561 -11.45078 -11.34599 -11.21002 -11.10317 -11.06373 -10.93905 -10.83235 -10.44674 -10.24864 -10.19815 -9.53816 -9.40011 -8.67174 -8.60167 -8.58628 -8.17373 -6.07547 -4.06327 1.06360 1.30861 1.35178 3.26296 3.31329 3.33198 3.41020 3.67746 4.01656 4.26497 4.38296 4.40267 4.72701 4.76908 4.83013 4.94422 4.96738 5.08559 5.11049 5.20422 5.23431 5.36250 5.40868 5.47866 5.55616 5.63034 5.69102 5.73486 5.75744 5.78699 5.89971 5.96244 6.09349 6.10245 6.15408 6.36068 6.45977 6.51489 6.61121 6.62924 6.69621 6.96425 6.99370 7.05035 7.16040 7.43222 7.58567 8.49702 8.98146 9.51550 11.05721 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.003503 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.494734 B = 7990.377308 C = 8488.594387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.133 3.867 3 N -0.987 5.987 4 C 0.228 3.772 5 C -0.529 4.529 6 H 0.082 0.918 7 C 0.072 3.928 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.265 1.265 13 S 2.776 3.224 14 O -0.986 6.986 15 O -0.962 6.962 16 N -1.126 6.126 17 C 0.195 3.805 18 H 0.099 0.901 19 C -0.124 4.124 20 C -0.079 4.079 21 C -0.093 4.093 22 C -0.107 4.107 23 C -0.094 4.094 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.083 4.083 27 C -0.112 4.112 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.413 0.587 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.136 0.864 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.196 -12.923 -13.158 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.007 3.993 3 N -0.829 5.829 4 C 0.105 3.895 5 C -0.568 4.568 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.784 3.216 14 O -0.970 6.970 15 O -0.946 6.946 16 N -0.883 5.883 17 C 0.087 3.913 18 H 0.117 0.883 19 C -0.163 4.163 20 C -0.117 4.117 21 C -0.094 4.094 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.083 4.083 27 C -0.168 4.168 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.247 0.753 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.154 0.846 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.378 -12.435 -13.543 23.969 hybrid contribution 1.041 0.392 0.855 1.403 sum 16.420 -12.043 -12.688 23.992 Atomic orbital electron populations 1.22251 0.95775 1.00925 1.04209 1.21055 0.95490 0.81825 1.00938 1.57554 1.78502 1.23153 1.23653 1.19436 0.98141 0.91201 0.80761 1.21419 0.95953 1.31608 1.07834 0.90035 1.24877 0.95693 0.94944 0.97498 1.69892 1.24133 1.34183 1.25146 0.86944 0.83603 0.79295 0.80396 1.19890 1.21037 1.18991 1.02158 0.72850 0.73402 0.73194 1.93534 1.70314 1.76403 1.56720 1.93654 1.85158 1.30262 1.85538 1.56415 1.29856 1.13708 1.88329 1.20189 0.97386 0.83120 0.90579 0.88338 1.22653 0.94339 1.00354 0.98929 1.21018 0.99624 0.99983 0.91039 1.20338 0.96057 0.99086 0.93914 1.20875 0.95327 0.99121 0.95585 1.21033 0.99789 0.98938 0.91486 1.21079 0.96935 0.99218 0.96741 1.20930 0.94966 0.99563 0.98184 1.19363 0.97165 0.99991 0.91820 1.20744 0.94375 0.99600 1.02110 0.89843 0.92640 0.93075 0.92092 0.91051 0.94890 0.95438 0.92565 0.75347 0.89947 0.89527 0.90524 0.89911 0.84584 0.85891 0.86149 0.91389 0.91831 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.84 37.16 0.37 -2.71 16 2 C 0.13 2.19 5.84 -4.04 -0.02 2.17 16 3 N -0.99 -19.26 2.85 -115.66 -0.33 -19.59 16 4 C 0.23 5.20 4.19 -5.19 -0.02 5.18 16 5 C -0.53 -14.71 8.97 -34.44 -0.31 -15.02 16 6 H 0.08 2.48 7.16 -52.49 -0.38 2.10 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 9 Si 0.87 20.80 27.47 -169.99 -4.67 16.13 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -5.83 6.54 56.52 0.37 -5.46 16 13 S 2.78 52.98 5.96 -107.50 -0.64 52.34 16 14 O -0.99 -19.48 14.96 -57.17 -0.86 -20.34 16 15 O -0.96 -22.63 17.11 -57.17 -0.98 -23.60 16 16 N -1.13 -15.95 5.56 -4.99 -0.03 -15.98 16 17 C 0.20 2.39 3.43 -68.05 -0.23 2.15 16 18 H 0.10 1.18 6.25 -51.93 -0.32 0.86 16 19 C -0.12 -1.15 6.77 -25.31 -0.17 -1.32 16 20 C -0.08 -0.67 6.27 -26.84 -0.17 -0.84 16 21 C -0.09 -1.03 6.00 -104.21 -0.63 -1.65 16 22 C -0.11 -1.39 5.79 -104.20 -0.60 -1.99 16 23 C -0.09 -1.31 9.96 -39.53 -0.39 -1.70 16 24 C -0.12 -1.43 10.05 -39.62 -0.40 -1.83 16 25 C -0.12 -1.22 9.69 -39.63 -0.38 -1.61 16 26 C -0.08 -0.85 5.88 -104.58 -0.62 -1.47 16 27 C -0.11 -0.81 9.87 36.01 0.36 -0.45 16 28 H 0.08 1.72 6.61 -51.93 -0.34 1.38 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.86 6.16 -51.93 -0.32 0.54 16 32 H 0.07 1.04 8.00 -51.93 -0.42 0.63 16 33 H 0.03 0.71 7.06 -51.93 -0.37 0.35 16 34 H 0.03 0.63 7.04 -51.93 -0.37 0.27 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.41 5.13 8.69 -34.47 -0.30 4.83 16 37 H 0.08 0.72 7.90 -51.93 -0.41 0.31 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.54 7.62 -51.93 -0.40 0.15 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.14 2.12 6.11 -52.48 -0.32 1.80 16 42 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 46 H 0.06 0.42 7.29 -51.93 -0.38 0.04 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -34.49 375.73 -11.25 -45.74 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.86 Total: 5.23 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -3.32 Total: -19.10 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.42 Total: -62.06 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -1.83 Total: -43.94 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 16 Polarization: 52.98 SS G_CDS: -0.64 Total: 52.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.49 -11.25 -45.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567125417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.622 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds