Wall clock time and date at job start Tue Mar 31 2020 21:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46912 * 2 1 4 4 C 1.46506 * 120.00239 * 85.00063 * 3 2 1 5 5 C 1.50695 * 109.46747 * 274.72228 * 4 3 2 6 6 H 1.07999 * 120.00684 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00101 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00215 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99744 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47160 * 89.99643 * 9 7 5 11 11 H 1.48495 * 109.46933 * 210.00161 * 9 7 5 12 12 H 1.48497 * 109.47066 * 329.99916 * 9 7 5 13 13 S 1.65597 * 119.99910 * 264.71837 * 3 2 1 14 14 O 1.42101 * 106.40154 * 23.82013 * 13 3 2 15 15 O 1.42106 * 106.40098 * 156.73670 * 13 3 2 16 16 N 1.65596 * 107.22389 * 270.27980 * 13 3 2 17 17 C 1.46498 * 119.99862 * 64.99463 * 16 13 3 18 18 H 1.09002 * 110.26997 * 337.07866 * 17 16 13 19 19 C 1.54349 * 110.30355 * 215.00596 * 17 16 13 20 20 C 1.54356 * 102.39634 * 214.72015 * 19 17 16 21 21 C 1.51372 * 105.17208 * 26.35424 * 20 19 17 22 22 C 1.38260 * 109.75114 * 342.81362 * 21 20 19 23 23 C 1.38453 * 119.85468 * 179.97438 * 22 21 20 24 24 C 1.38149 * 120.20972 * 359.97438 * 23 22 21 25 25 C 1.38210 * 119.93579 * 0.02562 * 24 23 22 26 26 C 1.38147 * 119.93361 * 0.02562 * 25 24 23 27 27 C 1.50705 * 119.89062 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.46839 * 300.00375 * 1 2 3 29 29 H 1.09003 * 109.46803 * 60.00131 * 1 2 3 30 30 H 1.08994 * 109.47095 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47056 * 239.99618 * 2 1 3 32 32 H 1.09003 * 109.46803 * 119.99869 * 2 1 3 33 33 H 1.08999 * 109.47194 * 34.71912 * 4 3 2 34 34 H 1.08998 * 109.47440 * 154.72121 * 4 3 2 35 35 H 0.97008 * 120.00034 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99918 * 245.00321 * 16 13 3 37 37 H 1.08992 * 110.81868 * 332.94452 * 19 17 16 38 38 H 1.09001 * 110.81992 * 96.49635 * 19 17 16 39 39 H 1.09000 * 110.30093 * 145.27268 * 20 19 17 40 40 H 1.08994 * 110.30269 * 267.32981 * 20 19 17 41 41 H 1.08003 * 119.89629 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.03338 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.03182 * 180.02562 * 25 24 23 44 44 H 1.08992 * 109.47241 * 269.94729 * 27 26 25 45 45 H 1.09002 * 109.46665 * 29.94194 * 27 26 25 46 46 H 1.08991 * 109.47149 * 149.94211 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1088 1.2639 5 6 0.8377 2.7345 1.6321 6 1 -0.0201 2.6031 0.9892 7 6 0.7243 3.4740 2.7903 8 7 -0.4280 4.0205 3.1113 9 14 2.2078 3.7008 3.9026 10 1 2.9524 4.9184 3.4926 11 1 1.7541 3.8479 5.3089 12 1 3.0962 2.5162 3.7906 13 16 2.4188 2.1178 -1.4280 14 8 1.6931 1.4417 -2.4456 15 8 2.3175 3.5168 -1.2001 16 7 4.0204 1.8046 -1.7091 17 6 4.4665 0.4302 -1.9505 18 1 3.7543 -0.2779 -1.5269 19 6 5.8682 0.2078 -1.3435 20 6 6.5146 -0.7668 -2.3510 21 6 5.8112 -0.5026 -3.6650 22 6 4.6342 0.1855 -3.4348 23 6 3.8219 0.5371 -4.4995 24 6 4.1841 0.2031 -5.7901 25 6 5.3606 -0.4847 -6.0202 26 6 6.1719 -0.8373 -4.9590 27 6 7.4548 -1.5867 -5.2111 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.4642 1.4175 2.0491 34 1 2.9115 2.8887 1.1528 35 1 -0.5077 4.5411 3.9260 36 1 4.6631 2.5311 -1.7139 37 1 6.4241 1.1442 -1.2991 38 1 5.7949 -0.2479 -0.3561 39 1 7.5809 -0.5614 -2.4449 40 1 6.3550 -1.7978 -2.0354 41 1 2.9022 1.0742 -4.3204 42 1 3.5485 0.4791 -6.6185 43 1 5.6455 -0.7462 -7.0286 44 1 7.2610 -2.6588 -5.1823 45 1 7.8479 -1.3147 -6.1907 46 1 8.1834 -1.3284 -4.4427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567125417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:53 Heat of formation + Delta-G solvation = -79.491275 kcal Electronic energy + Delta-G solvation = -28383.307636 eV Core-core repulsion = 24591.129632 eV Total energy + Delta-G solvation = -3792.178004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25695 -38.34436 -37.82139 -37.45571 -36.87181 -34.60011 -34.52401 -33.21868 -31.74235 -29.90615 -29.11072 -27.75965 -27.01881 -24.35930 -23.40065 -23.04339 -21.95094 -21.21933 -20.54660 -19.07092 -18.62601 -18.32181 -17.66623 -17.03505 -16.75395 -16.23505 -15.99136 -15.82420 -15.43568 -15.04901 -14.82239 -14.60859 -14.45396 -14.40502 -14.01599 -13.90984 -13.73731 -13.56766 -13.20590 -13.13249 -13.05373 -13.04711 -13.00615 -12.87009 -12.74550 -12.71019 -12.36368 -12.17882 -12.08662 -11.95011 -11.84061 -11.71649 -11.63521 -11.46018 -10.74168 -10.59312 -9.83570 -9.51999 -9.40793 -8.24495 -6.29157 -0.40358 0.43300 0.47778 1.38339 1.42601 1.50503 2.00992 2.38402 2.59479 2.82895 3.08907 3.39985 3.43180 3.60649 3.80719 3.99962 4.06884 4.18853 4.19106 4.28641 4.36182 4.41750 4.48176 4.51814 4.67405 4.76004 4.81862 4.83356 4.86949 4.91707 4.94230 4.99321 5.02963 5.08986 5.13291 5.22619 5.31629 5.39442 5.40526 5.51737 5.53705 5.63692 5.65157 5.74248 5.78503 6.08066 6.16523 6.35946 6.74747 7.32903 8.92765 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.003503 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.494734 B = 7990.377308 C = 8488.594387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.125 3.875 3 N -0.991 5.991 4 C 0.234 3.766 5 C -0.535 4.535 6 H 0.033 0.967 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.941 3.059 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.224 1.224 13 S 2.788 3.212 14 O -1.001 7.001 15 O -1.015 7.015 16 N -1.108 6.108 17 C 0.184 3.816 18 H 0.101 0.899 19 C -0.118 4.118 20 C -0.073 4.073 21 C -0.096 4.096 22 C -0.128 4.128 23 C -0.127 4.127 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.086 4.086 27 C -0.110 4.110 28 H 0.046 0.954 29 H 0.030 0.970 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.266 0.734 36 H 0.422 0.578 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.132 0.868 43 H 0.145 0.855 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.722 -15.669 -12.907 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.832 5.832 4 C 0.109 3.891 5 C -0.574 4.574 6 H 0.051 0.949 7 C -0.193 4.193 8 N -0.592 5.592 9 Si 0.763 3.237 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.146 1.146 13 S 2.797 3.203 14 O -0.984 6.984 15 O -0.999 6.999 16 N -0.870 5.870 17 C 0.078 3.922 18 H 0.119 0.881 19 C -0.157 4.157 20 C -0.111 4.111 21 C -0.097 4.097 22 C -0.130 4.130 23 C -0.146 4.146 24 C -0.152 4.152 25 C -0.138 4.138 26 C -0.086 4.086 27 C -0.166 4.166 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.258 0.742 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.149 0.851 43 H 0.163 0.837 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.909 -15.212 -13.320 28.376 hybrid contribution -0.443 1.181 0.588 1.392 sum 19.466 -14.031 -12.732 27.164 Atomic orbital electron populations 1.22219 0.97417 1.02275 1.01130 1.21365 0.94184 0.80687 1.03726 1.57465 1.79196 1.24113 1.22413 1.19251 0.95173 0.91937 0.82709 1.21753 0.96945 1.31698 1.07045 0.94859 1.25940 0.99254 0.94572 0.99574 1.70080 1.27164 1.35832 1.26146 0.85818 0.79620 0.80676 0.77538 1.19845 1.20815 1.14606 1.01521 0.73838 0.72035 0.72948 1.93517 1.71593 1.76236 1.57026 1.93576 1.86486 1.33655 1.86197 1.55921 1.27903 1.15411 1.87752 1.20572 0.99448 0.81380 0.90848 0.88130 1.22713 0.91968 1.01156 0.99885 1.21088 1.00336 1.00628 0.89012 1.20703 0.95360 0.98192 0.95437 1.21011 0.96267 1.00210 0.95532 1.21001 0.99643 1.00725 0.93187 1.21264 0.98009 0.99662 0.96257 1.21263 0.94182 0.98661 0.99730 1.19804 0.98118 0.99263 0.91443 1.20802 0.92869 0.99732 1.03190 0.93494 0.95081 0.89506 0.89326 0.88063 0.92112 0.94997 0.92565 0.74188 0.89354 0.87595 0.88438 0.88165 0.87516 0.85054 0.83677 0.90285 0.90737 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.21 9.84 71.98 0.71 -5.50 16 2 C 0.13 3.95 5.84 86.38 0.50 4.45 16 3 N -0.99 -38.26 2.85 -519.84 -1.48 -39.75 16 4 C 0.23 10.44 4.19 85.63 0.36 10.80 16 5 C -0.54 -30.68 8.97 25.60 0.23 -30.45 16 6 H 0.03 2.16 7.16 -2.91 -0.02 2.14 16 7 C 0.00 0.22 5.47 84.66 0.46 0.68 16 8 N -0.95 -60.45 13.96 21.45 0.30 -60.16 16 9 Si 0.94 42.32 27.47 68.60 1.88 44.20 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.22 -8.50 6.54 99.48 0.65 -7.85 16 13 S 2.79 108.51 5.96 -56.49 -0.34 108.17 16 14 O -1.00 -41.09 14.96 -128.00 -1.91 -43.01 16 15 O -1.02 -49.67 17.11 -128.00 -2.19 -51.85 16 16 N -1.11 -30.47 5.56 -169.70 -0.94 -31.42 16 17 C 0.18 4.13 3.43 44.92 0.15 4.29 16 18 H 0.10 2.17 6.25 -2.39 -0.01 2.16 16 19 C -0.12 -1.73 6.77 31.51 0.21 -1.51 16 20 C -0.07 -0.92 6.27 30.52 0.19 -0.73 16 21 C -0.10 -1.84 6.00 -19.60 -0.12 -1.96 16 22 C -0.13 -3.16 5.79 -19.59 -0.11 -3.28 16 23 C -0.13 -3.61 9.96 22.30 0.22 -3.38 16 24 C -0.13 -3.12 10.05 22.24 0.22 -2.90 16 25 C -0.12 -2.25 9.69 22.24 0.22 -2.03 16 26 C -0.09 -1.50 5.88 -19.84 -0.12 -1.62 16 27 C -0.11 -1.13 9.87 71.24 0.70 -0.43 16 28 H 0.05 2.03 6.61 -2.39 -0.02 2.01 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.09 2.32 6.16 -2.39 -0.01 2.31 16 32 H 0.10 2.62 8.00 -2.39 -0.02 2.60 16 33 H 0.06 2.40 7.06 -2.39 -0.02 2.39 16 34 H 0.03 1.42 7.04 -2.39 -0.02 1.40 16 35 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 36 H 0.42 10.11 8.69 -96.75 -0.84 9.27 16 37 H 0.09 1.20 7.90 -2.39 -0.02 1.18 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 0.86 7.62 -2.39 -0.02 0.85 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.11 3.57 6.11 -2.91 -0.02 3.55 16 42 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 43 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 45 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 46 H 0.08 0.64 7.29 -2.39 -0.02 0.62 16 Total: -1.00 -80.88 375.73 -0.75 -81.63 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.10 Total: 25.75 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 3.84 Total: -33.57 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -2.13 Total: -131.32 kcal Atomic # 8 Polarization: -90.76 SS G_CDS: -4.10 Total: -94.86 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Atomic # 16 Polarization: 108.51 SS G_CDS: -0.34 Total: 108.17 kcal Total: -80.88 -0.75 -81.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567125417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.137 kcal (2) G-P(sol) polarization free energy of solvation -80.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds