Wall clock time and date at job start Tue Mar 31 2020 20:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.46510 * 120.00089 * 59.99586 * 12 2 1 14 14 S 1.65604 * 120.00327 * 240.00206 * 12 2 1 15 15 O 1.42103 * 106.40430 * 203.53883 * 14 12 2 16 16 O 1.42102 * 106.39828 * 336.45857 * 14 12 2 17 17 N 1.65595 * 107.21718 * 89.99813 * 14 12 2 18 18 C 1.43857 * 117.71201 * 269.74034 * 17 14 12 19 19 C 1.50924 * 111.14732 * 263.60589 * 18 17 14 20 20 C 1.52324 * 111.74456 * 300.26942 * 19 18 17 21 21 C 1.41544 * 108.82313 * 221.92505 * 20 19 18 22 22 C 1.37049 * 121.90308 * 180.02562 * 21 20 19 23 23 C 1.38355 * 118.79963 * 0.02562 * 22 21 20 24 24 C 1.37049 * 118.79935 * 0.04207 * 23 22 21 25 25 C 1.31868 * 131.88179 * 41.97900 * 20 19 18 26 26 C 1.52330 * 131.87727 * 359.96562 * 25 20 19 27 27 C 1.43847 * 117.71825 * 90.00345 * 17 14 12 28 28 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 30 30 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46654 * 90.00209 * 13 12 2 33 33 H 1.08993 * 109.47171 * 209.99894 * 13 12 2 34 34 H 1.08996 * 109.46700 * 330.00687 * 13 12 2 35 35 H 1.09002 * 109.20346 * 23.86237 * 18 17 14 36 36 H 1.09002 * 109.19952 * 143.15774 * 18 17 14 37 37 H 1.09003 * 109.09270 * 179.65073 * 19 18 17 38 38 H 1.09000 * 108.97982 * 60.81712 * 19 18 17 39 39 H 1.07991 * 119.05011 * 0.03803 * 21 20 19 40 40 H 1.08000 * 120.59945 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.60372 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.05284 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.02044 * 197.39498 * 26 25 20 44 44 H 1.08996 * 109.01512 * 78.57434 * 26 25 20 45 45 H 1.08998 * 109.20130 * 216.83886 * 27 17 14 46 46 H 1.08993 * 109.20083 * 336.18098 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.7118 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8089 3.3998 18 6 1.4899 2.1424 3.1357 19 6 2.3373 3.1696 3.8461 20 6 2.3239 2.9658 5.3556 21 6 2.2152 4.2285 5.9860 22 6 2.1798 4.3564 7.3500 23 6 2.2533 3.2151 8.1286 24 6 2.3597 1.9980 7.5077 25 6 2.3939 1.8780 6.0978 26 6 2.5144 0.4040 5.7327 27 6 1.6202 0.0391 4.5663 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7011 1.1560 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6238 -2.2853 2.5001 34 1 0.6904 -2.3002 0.9845 35 1 1.5297 2.3308 2.0629 36 1 0.4585 2.2325 3.4768 37 1 1.9561 4.1651 3.6187 38 1 3.3633 3.0929 3.4863 39 1 2.1583 5.1167 5.3744 40 1 2.0969 5.3305 7.8089 41 1 2.2275 3.2820 9.2063 42 1 2.4170 1.1044 8.1115 43 1 2.2357 -0.1997 6.5963 44 1 3.5493 0.1871 5.4684 45 1 0.5823 0.2356 4.8350 46 1 1.7381 -1.0212 4.3431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569828409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:53 Heat of formation + Delta-G solvation = -37.607252 kcal Electronic energy + Delta-G solvation = -28844.375868 eV Core-core repulsion = 25054.014092 eV Total energy + Delta-G solvation = -3790.361776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.07270 -37.14342 -36.82425 -36.16393 -35.19990 -33.69873 -32.59356 -32.27197 -29.88120 -29.09506 -27.10770 -25.59991 -25.14790 -24.70193 -22.59655 -22.06700 -20.69654 -19.85211 -18.48572 -17.52587 -16.94305 -16.38008 -16.13525 -16.04160 -15.59552 -15.24171 -14.98664 -14.35021 -14.26940 -13.70664 -13.45399 -13.33931 -13.22604 -12.99008 -12.91350 -12.75626 -12.18956 -12.04768 -11.92859 -11.83993 -11.73010 -11.61429 -11.37280 -11.31485 -11.25504 -11.22699 -10.98768 -10.82183 -10.65978 -10.40116 -10.30190 -10.26617 -10.02100 -9.28072 -9.14402 -8.74051 -8.59707 -8.45782 -7.96394 -6.08460 -4.14603 1.17093 1.25697 1.45223 3.27263 3.35559 3.39579 3.45568 3.71237 4.03783 4.39719 4.41063 4.65833 4.84550 4.86059 4.93937 4.95730 5.17011 5.22946 5.23971 5.29756 5.38404 5.47944 5.51771 5.60702 5.68514 5.72761 5.82664 5.88729 5.97144 6.09257 6.13603 6.19596 6.26816 6.37272 6.43454 6.48089 6.60445 6.63303 6.74987 6.78269 6.96578 7.00139 7.03174 7.46331 7.62796 7.77843 8.03157 8.26812 8.87902 9.51301 10.97224 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023866 B = 0.003426 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.940258 B = 8171.573567 C = 8668.704444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.991 5.991 13 C 0.110 3.890 14 S 2.767 3.233 15 O -0.994 6.994 16 O -0.971 6.971 17 N -0.994 5.994 18 C 0.127 3.873 19 C -0.103 4.103 20 C -0.058 4.058 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.061 4.061 26 C -0.102 4.102 27 C 0.129 3.871 28 H 0.033 0.967 29 H 0.011 0.989 30 H 0.093 0.907 31 H 0.262 0.738 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.189 3.041 18.365 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.833 5.833 13 C -0.036 4.036 14 S 2.777 3.223 15 O -0.978 6.978 16 O -0.955 6.955 17 N -0.831 5.831 18 C 0.001 3.999 19 C -0.142 4.142 20 C -0.058 4.058 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.062 4.062 26 C -0.141 4.141 27 C 0.002 3.998 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.361 3.234 18.258 18.592 hybrid contribution -0.141 -0.350 -0.705 0.799 sum -1.501 2.885 17.553 17.852 Atomic orbital electron populations 1.22127 0.98275 0.99781 1.00633 1.18737 0.91266 0.92936 0.80599 0.92421 1.21379 1.31396 1.13049 0.90045 0.91938 1.24904 0.94951 0.95031 0.98998 1.69862 1.36590 1.22784 1.23670 0.86451 0.78597 0.79724 0.82708 1.19728 1.20993 1.20876 1.57766 1.70035 1.19798 1.35740 1.21150 1.01726 0.82149 0.98608 1.02459 0.74067 0.73221 0.72519 1.93525 1.69179 1.60505 1.74542 1.93591 1.73899 1.55695 1.72295 1.56683 1.68508 1.23677 1.34211 1.20306 0.98124 0.80546 1.00928 1.21194 1.02558 1.00122 0.90286 1.18761 0.99190 0.92008 0.95882 1.22081 1.00378 0.97077 0.94982 1.20964 1.01048 0.98430 0.94178 1.20953 1.01096 0.93076 0.99546 1.22039 1.00675 0.97752 0.94197 1.18697 0.99756 0.94752 0.92949 1.21259 1.02081 0.91500 0.99220 1.20374 0.99288 0.95010 0.85078 0.94771 0.96996 0.88852 0.92762 0.93295 0.93465 0.90958 0.88901 0.90826 0.89387 0.89918 0.86237 0.86299 0.86339 0.86391 0.89653 0.90042 0.90802 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.95 37.16 0.33 -2.95 16 2 C 0.27 6.41 2.62 -69.09 -0.18 6.23 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 4 C -0.52 -13.88 8.37 -34.44 -0.29 -14.17 16 5 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.40 11.31 55.43 0.63 -23.78 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.99 -20.34 3.12 -115.85 -0.36 -20.70 16 13 C 0.11 1.94 9.53 59.85 0.57 2.51 16 14 S 2.77 54.11 5.78 -107.50 -0.62 53.49 16 15 O -0.99 -20.24 15.87 -57.17 -0.91 -21.15 16 16 O -0.97 -22.20 15.35 -57.17 -0.88 -23.08 16 17 N -0.99 -15.11 2.77 -120.32 -0.33 -15.44 16 18 C 0.13 1.80 5.48 -6.49 -0.04 1.77 16 19 C -0.10 -1.35 5.69 -28.12 -0.16 -1.51 16 20 C -0.06 -0.74 5.64 -104.46 -0.59 -1.33 16 21 C -0.13 -1.41 9.24 -38.75 -0.36 -1.77 16 22 C -0.13 -1.29 10.07 -39.97 -0.40 -1.69 16 23 C -0.13 -1.27 10.07 -39.97 -0.40 -1.68 16 24 C -0.13 -1.37 9.24 -38.75 -0.36 -1.73 16 25 C -0.06 -0.76 5.65 -104.46 -0.59 -1.35 16 26 C -0.10 -1.20 5.70 -27.86 -0.16 -1.36 16 27 C 0.13 1.61 5.52 -6.24 -0.03 1.58 16 28 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.68 7.18 -51.93 -0.37 0.31 16 34 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 35 H 0.09 1.47 7.29 -51.93 -0.38 1.09 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.95 7.17 -51.93 -0.37 0.57 16 38 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.12 1.12 7.32 -52.49 -0.38 0.74 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.12 1.02 7.32 -52.49 -0.38 0.63 16 43 H 0.09 0.77 7.17 -51.93 -0.37 0.40 16 44 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.02 6.68 -51.93 -0.35 0.67 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -31.54 369.18 -11.56 -43.10 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.88 Total: 1.84 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -2.75 Total: -15.84 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.07 Total: -59.92 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -1.78 Total: -44.22 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 54.11 SS G_CDS: -0.62 Total: 53.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.54 -11.56 -43.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569828409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.494 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds