Wall clock time and date at job start Tue Mar 31 2020 20:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.46510 * 120.00089 * 59.99586 * 12 2 1 14 14 S 1.65604 * 120.00327 * 240.00206 * 12 2 1 15 15 O 1.42103 * 106.40430 * 203.53883 * 14 12 2 16 16 O 1.42102 * 106.39828 * 336.45857 * 14 12 2 17 17 N 1.65595 * 107.21718 * 89.99813 * 14 12 2 18 18 C 1.43857 * 117.71201 * 269.74034 * 17 14 12 19 19 C 1.50924 * 111.14732 * 263.60589 * 18 17 14 20 20 C 1.52324 * 111.74456 * 300.26942 * 19 18 17 21 21 C 1.41544 * 108.82313 * 221.92505 * 20 19 18 22 22 C 1.37049 * 121.90308 * 180.02562 * 21 20 19 23 23 C 1.38355 * 118.79963 * 0.02562 * 22 21 20 24 24 C 1.37049 * 118.79935 * 0.04207 * 23 22 21 25 25 C 1.31868 * 131.88179 * 41.97900 * 20 19 18 26 26 C 1.52330 * 131.87727 * 359.96562 * 25 20 19 27 27 C 1.43847 * 117.71825 * 90.00345 * 17 14 12 28 28 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 30 30 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46654 * 90.00209 * 13 12 2 33 33 H 1.08993 * 109.47171 * 209.99894 * 13 12 2 34 34 H 1.08996 * 109.46700 * 330.00687 * 13 12 2 35 35 H 1.09002 * 109.20346 * 23.86237 * 18 17 14 36 36 H 1.09002 * 109.19952 * 143.15774 * 18 17 14 37 37 H 1.09003 * 109.09270 * 179.65073 * 19 18 17 38 38 H 1.09000 * 108.97982 * 60.81712 * 19 18 17 39 39 H 1.07991 * 119.05011 * 0.03803 * 21 20 19 40 40 H 1.08000 * 120.59945 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.60372 * 180.02562 * 23 22 21 42 42 H 1.07994 * 119.05284 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.02044 * 197.39498 * 26 25 20 44 44 H 1.08996 * 109.01512 * 78.57434 * 26 25 20 45 45 H 1.08998 * 109.20130 * 216.83886 * 27 17 14 46 46 H 1.08993 * 109.20083 * 336.18098 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 3.1365 -2.2939 -3.6038 10 1 1.1525 -1.5961 -4.8105 11 1 3.1331 -0.1969 -4.8221 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.7118 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8089 3.3998 18 6 1.4899 2.1424 3.1357 19 6 2.3373 3.1696 3.8461 20 6 2.3239 2.9658 5.3556 21 6 2.2152 4.2285 5.9860 22 6 2.1798 4.3564 7.3500 23 6 2.2533 3.2151 8.1286 24 6 2.3597 1.9980 7.5077 25 6 2.3939 1.8780 6.0978 26 6 2.5144 0.4040 5.7327 27 6 1.6202 0.0391 4.5663 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7011 1.1560 -3.4844 32 1 2.4157 -2.7377 0.9716 33 1 1.6238 -2.2853 2.5001 34 1 0.6904 -2.3002 0.9845 35 1 1.5297 2.3308 2.0629 36 1 0.4585 2.2325 3.4768 37 1 1.9561 4.1651 3.6187 38 1 3.3633 3.0929 3.4863 39 1 2.1583 5.1167 5.3744 40 1 2.0969 5.3305 7.8089 41 1 2.2275 3.2820 9.2063 42 1 2.4170 1.1044 8.1115 43 1 2.2357 -0.1997 6.5963 44 1 3.5493 0.1871 5.4684 45 1 0.5823 0.2356 4.8350 46 1 1.7381 -1.0212 4.3431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569828409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:52 Heat of formation + Delta-G solvation = -56.532262 kcal Electronic energy + Delta-G solvation = -28845.196518 eV Core-core repulsion = 25054.014092 eV Total energy + Delta-G solvation = -3791.182426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94714 -38.45745 -38.18822 -37.88320 -36.85595 -34.65793 -34.52961 -33.19062 -30.94073 -30.70957 -28.11550 -27.28418 -26.98645 -25.66150 -23.40482 -23.21286 -22.47085 -20.73454 -19.88856 -18.99491 -18.56301 -18.17749 -17.40474 -17.04990 -16.78252 -16.48362 -16.14913 -15.89143 -15.31653 -15.20673 -14.87959 -14.70486 -14.39990 -14.20696 -14.03380 -13.85759 -13.69744 -13.35766 -13.26120 -13.14756 -13.13909 -13.00427 -12.89585 -12.79913 -12.78508 -12.58741 -12.46329 -12.25054 -12.16189 -12.04755 -11.94128 -11.63523 -11.20772 -11.13645 -10.51047 -10.23370 -9.66122 -9.53964 -9.53286 -8.11997 -6.25174 -0.36007 0.46693 0.62245 1.40525 1.43664 1.53969 2.03663 2.42126 2.55201 2.89749 3.16100 3.38563 3.48449 3.72305 3.80390 4.04977 4.09739 4.15606 4.25696 4.36321 4.39208 4.49769 4.50506 4.65478 4.70863 4.74706 4.80814 4.86448 4.89283 4.91687 5.00275 5.02038 5.05148 5.14039 5.18236 5.19400 5.26277 5.29125 5.61261 5.65159 5.65673 5.66920 5.79981 5.88293 5.95910 6.15669 6.19940 6.31244 6.82180 7.43670 8.92095 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023866 B = 0.003426 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.940258 B = 8171.573567 C = 8668.704444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.273 3.727 3 H 0.026 0.974 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.283 1.283 12 N -0.998 5.998 13 C 0.103 3.897 14 S 2.777 3.223 15 O -1.005 7.005 16 O -1.013 7.013 17 N -0.982 5.982 18 C 0.124 3.876 19 C -0.101 4.101 20 C -0.079 4.079 21 C -0.140 4.140 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.135 4.135 25 C -0.080 4.080 26 C -0.101 4.101 27 C 0.118 3.882 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.265 0.735 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.055 0.945 39 H 0.131 0.869 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.117 0.883 44 H 0.058 0.942 45 H 0.100 0.900 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.362 2.720 20.687 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.169 3.831 3 H 0.043 0.957 4 C -0.579 4.579 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.840 5.840 13 C -0.043 4.043 14 S 2.788 3.212 15 O -0.989 6.989 16 O -0.997 6.997 17 N -0.821 5.821 18 C -0.002 4.002 19 C -0.140 4.140 20 C -0.079 4.079 21 C -0.157 4.157 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.080 4.080 26 C -0.140 4.140 27 C -0.007 4.007 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.135 0.865 44 H 0.076 0.924 45 H 0.119 0.881 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.531 2.890 20.587 20.942 hybrid contribution 0.244 -0.206 -1.302 1.341 sum -2.287 2.684 19.285 19.604 Atomic orbital electron populations 1.21911 0.96679 1.00258 1.00599 1.18410 0.92323 0.91281 0.81078 0.95662 1.21685 1.31556 1.13053 0.91644 0.92877 1.25604 0.95199 0.95744 1.01524 1.69969 1.37172 1.23618 1.24285 0.85587 0.78321 0.78615 0.79597 1.19625 1.19850 1.20951 1.57674 1.70000 1.21051 1.35273 1.21360 1.01664 0.80352 1.00879 1.01957 0.74203 0.72528 0.72542 1.93497 1.69897 1.60956 1.74524 1.93529 1.75384 1.57046 1.73721 1.56341 1.67863 1.23960 1.33961 1.20420 0.99751 0.80188 0.99856 1.21168 1.00780 1.00847 0.91161 1.18817 1.00705 0.93126 0.95243 1.22243 1.00715 0.96877 0.95912 1.21304 0.99896 0.99762 0.93784 1.21326 0.99794 0.92662 1.00959 1.22271 1.00326 0.99102 0.93546 1.18880 1.00396 0.94720 0.94054 1.21300 1.00544 0.92081 1.00042 1.20713 1.00996 0.94891 0.84075 0.93903 0.94377 0.91435 0.92604 0.94289 0.90067 0.90254 0.91245 0.88205 0.87403 0.92675 0.85142 0.84024 0.83788 0.84322 0.86496 0.92357 0.88132 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.94 8.95 71.98 0.64 -5.30 16 2 C 0.27 13.38 2.62 44.25 0.12 13.50 16 3 H 0.03 1.41 6.91 -2.38 -0.02 1.39 16 4 C -0.54 -29.46 8.37 25.60 0.21 -29.25 16 5 H 0.05 2.92 7.65 -2.91 -0.02 2.89 16 6 C 0.02 1.05 5.30 84.66 0.45 1.50 16 7 N -0.91 -50.82 11.31 21.45 0.24 -50.58 16 8 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 N -1.00 -41.27 3.12 -520.45 -1.62 -42.89 16 13 C 0.10 3.53 9.53 127.77 1.22 4.75 16 14 S 2.78 110.62 5.78 -56.49 -0.33 110.29 16 15 O -1.01 -41.12 15.87 -128.00 -2.03 -43.15 16 16 O -1.01 -48.71 15.35 -128.00 -1.96 -50.67 16 17 N -0.98 -29.36 2.77 -534.58 -1.48 -30.84 16 18 C 0.12 3.49 5.48 86.19 0.47 3.96 16 19 C -0.10 -2.66 5.69 29.70 0.17 -2.49 16 20 C -0.08 -1.92 5.64 -19.34 -0.11 -2.03 16 21 C -0.14 -2.87 9.24 22.81 0.21 -2.66 16 22 C -0.13 -2.25 10.07 22.02 0.22 -2.03 16 23 C -0.13 -2.14 10.07 22.02 0.22 -1.92 16 24 C -0.13 -2.49 9.24 22.81 0.21 -2.27 16 25 C -0.08 -1.85 5.65 -19.34 -0.11 -1.96 16 26 C -0.10 -2.20 5.70 29.86 0.17 -2.03 16 27 C 0.12 2.72 5.52 86.36 0.48 3.20 16 28 H 0.04 1.76 6.66 -2.38 -0.02 1.75 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 3.35 6.06 -2.39 -0.01 3.33 16 31 H 0.26 13.98 8.31 -92.70 -0.77 13.21 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 2.19 7.18 -2.39 -0.02 2.18 16 34 H 0.08 2.59 6.43 -2.39 -0.02 2.57 16 35 H 0.07 2.29 7.29 -2.39 -0.02 2.27 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.11 2.31 7.17 -2.39 -0.02 2.29 16 38 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 39 H 0.13 2.26 7.32 -2.92 -0.02 2.24 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.14 1.89 7.32 -2.91 -0.02 1.86 16 43 H 0.12 1.75 7.17 -2.39 -0.02 1.74 16 44 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 45 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.09 1.96 6.68 -2.39 -0.02 1.95 16 Total: -1.00 -69.63 369.18 0.39 -69.24 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.98 Total: 18.16 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 4.58 Total: -25.03 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -2.86 Total: -124.31 kcal Atomic # 8 Polarization: -89.82 SS G_CDS: -4.00 Total: -93.82 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 110.62 SS G_CDS: -0.33 Total: 110.29 kcal Total: -69.63 0.39 -69.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569828409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.710 kcal (2) G-P(sol) polarization free energy of solvation -69.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds