Wall clock time and date at job start Tue Mar 31 2020 20:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50698 * 109.47721 * 175.00208 * 4 2 1 6 6 C 1.38424 * 122.54088 * 89.99465 * 5 4 2 7 7 C 1.33387 * 114.92263 * 179.97438 * 6 5 4 8 8 S 1.75884 * 109.59153 * 0.02562 * 7 6 5 9 9 C 1.33387 * 122.53872 * 269.71909 * 5 4 2 10 10 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 11 11 C 1.34779 * 119.99793 * 274.99565 * 10 2 1 12 12 O 1.21348 * 119.99941 * 0.02562 * 11 10 2 13 13 C 1.49452 * 119.99831 * 180.02562 * 11 10 2 14 14 O 1.21355 * 119.99739 * 359.97438 * 13 11 10 15 15 N 1.34774 * 120.00121 * 180.02562 * 13 11 10 16 16 C 1.46500 * 120.00083 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.47096 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47150 * 300.00060 * 17 16 15 19 19 C 1.53005 * 109.47170 * 59.99965 * 17 16 15 20 20 C 1.50699 * 109.47208 * 180.02562 * 17 16 15 21 21 H 1.07999 * 120.00040 * 0.02562 * 20 17 16 22 22 C 1.37875 * 120.00122 * 180.02562 * 20 17 16 23 23 N 1.31514 * 119.99744 * 359.97438 * 22 20 17 24 24 Si 1.86799 * 120.00324 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.46861 * 59.99547 * 24 22 20 26 26 H 1.48493 * 109.47402 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46977 * 300.00322 * 24 22 20 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 32 32 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 33 33 H 1.08001 * 122.53721 * 0.02562 * 6 5 4 34 34 H 1.08003 * 125.20504 * 179.97438 * 7 6 5 35 35 H 1.08004 * 125.20309 * 0.02562 * 9 5 4 36 36 H 0.97004 * 120.00223 * 94.99655 * 10 2 1 37 37 H 0.97004 * 119.99693 * 359.97438 * 15 13 11 38 38 H 1.09002 * 109.47216 * 299.99855 * 16 15 13 39 39 H 1.09002 * 109.46823 * 59.99996 * 16 15 13 40 40 H 1.09001 * 109.47089 * 60.00179 * 18 17 16 41 41 H 1.09000 * 109.47480 * 179.97438 * 18 17 16 42 42 H 1.09002 * 109.47361 * 300.00176 * 18 17 16 43 43 H 1.08998 * 109.46537 * 59.99860 * 19 17 16 44 44 H 1.08999 * 109.47117 * 179.97438 * 19 17 16 45 45 H 1.09001 * 109.46814 * 300.00039 * 19 17 16 46 46 H 0.97004 * 119.99561 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3128 6 6 4.3798 -1.5523 -0.7335 7 6 5.6829 -1.3095 -0.8823 8 16 5.9052 0.1757 -1.7980 9 6 4.1645 0.3864 -1.9362 10 7 2.0183 -0.6906 1.1962 11 6 2.1471 -0.0182 2.3571 12 8 1.8581 1.1591 2.4117 13 6 2.6458 -0.7226 3.5773 14 8 2.9343 -1.9001 3.5227 15 7 2.7741 -0.0504 4.7383 16 6 3.2624 -0.7410 5.9345 17 6 3.3140 0.2421 7.1057 18 6 4.2581 1.3959 6.7618 19 6 1.9114 0.7927 7.3715 20 6 3.8169 -0.4681 8.3360 21 1 4.0744 -1.5159 8.2873 22 6 3.9482 0.2196 9.5238 23 7 3.6351 1.4955 9.5829 24 14 4.5723 -0.6606 11.0486 25 1 5.9341 -1.1935 10.7901 26 1 4.6222 0.2936 12.1854 27 1 3.6573 -1.7816 11.3824 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2617 -2.1370 33 1 4.0067 -2.4153 -0.2021 34 1 6.4796 -1.9294 -0.4985 35 1 3.6747 1.2030 -2.4458 36 1 2.2490 -1.6318 1.1526 37 1 2.5431 0.8907 4.7819 38 1 2.5900 -1.5633 6.1792 39 1 4.2618 -1.1329 5.7452 40 1 3.8947 1.9098 5.8719 41 1 4.2945 2.0966 7.5960 42 1 5.2573 1.0037 6.5724 43 1 1.2389 -0.0293 7.6165 44 1 1.9480 1.4928 8.2062 45 1 1.5481 1.3065 6.4815 46 1 3.7279 1.9794 10.4184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569957004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:03 Heat of formation + Delta-G solvation = -50.915003 kcal Electronic energy + Delta-G solvation = -27082.484344 eV Core-core repulsion = 23291.545500 eV Total energy + Delta-G solvation = -3790.938844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51263 -39.03637 -38.11478 -36.46704 -35.78255 -33.36136 -31.88587 -30.88041 -29.95045 -27.39520 -26.35591 -25.71682 -25.29282 -23.88566 -23.26067 -21.16432 -20.23881 -19.14455 -18.89878 -18.20838 -17.73080 -16.77115 -16.02842 -15.75343 -15.61850 -15.26160 -14.89018 -14.56814 -14.18652 -13.91472 -13.65478 -13.53967 -13.22794 -13.04446 -12.92631 -12.84207 -12.57909 -12.40168 -12.21135 -12.02315 -11.88463 -11.40695 -11.39022 -11.25634 -11.15574 -10.92832 -10.85992 -10.74028 -10.39227 -10.19972 -9.64578 -9.52536 -9.33663 -9.20073 -8.98643 -8.80580 -8.59143 -8.58311 -8.36500 -6.02335 -4.13294 0.79529 1.45729 1.70534 1.77972 2.45116 2.62775 3.29686 3.34404 3.37403 3.51868 3.95568 4.39180 4.45913 4.60965 4.68265 4.85477 4.88669 5.02506 5.18200 5.24169 5.26285 5.35554 5.42558 5.47393 5.71413 5.82829 5.97671 6.12372 6.13524 6.21086 6.24191 6.30804 6.47658 6.64614 6.83799 6.85780 6.94980 7.00930 7.15823 7.34022 7.55633 7.67888 7.75281 8.00502 8.00987 8.13742 8.33927 8.42894 8.86743 9.52566 10.99038 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.002464 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.398801 B =11362.473799 C =12178.565546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.068 4.068 5 C -0.101 4.101 6 C -0.128 4.128 7 C -0.207 4.207 8 S 0.090 5.910 9 C -0.212 4.212 10 N -0.697 5.697 11 C 0.509 3.491 12 O -0.521 6.521 13 C 0.495 3.505 14 O -0.537 6.537 15 N -0.680 5.680 16 C 0.128 3.872 17 C 0.057 3.943 18 C -0.133 4.133 19 C -0.134 4.134 20 C -0.509 4.509 21 H 0.058 0.942 22 C 0.067 3.933 23 N -0.884 5.884 24 Si 0.895 3.105 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.410 0.590 37 H 0.410 0.590 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.008 0.992 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.008 0.992 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.139 -2.755 -24.307 24.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.108 4.108 5 C -0.113 4.113 6 C -0.159 4.159 7 C -0.342 4.342 8 S 0.354 5.646 9 C -0.347 4.347 10 N -0.352 5.352 11 C 0.290 3.710 12 O -0.397 6.397 13 C 0.274 3.726 14 O -0.415 6.415 15 N -0.332 5.332 16 C 0.006 3.994 17 C 0.056 3.944 18 C -0.191 4.191 19 C -0.191 4.191 20 C -0.547 4.547 21 H 0.076 0.924 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.722 3.278 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.158 0.842 34 H 0.182 0.818 35 H 0.181 0.819 36 H 0.246 0.754 37 H 0.248 0.752 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.027 0.973 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.106 0.894 45 H 0.027 0.973 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.839 -1.746 -24.640 24.716 hybrid contribution -0.778 -1.247 1.382 2.017 sum -1.618 -2.993 -23.258 23.506 Atomic orbital electron populations 1.22205 0.94580 1.02563 1.03006 1.21048 0.94082 0.97716 0.83050 0.88935 1.20672 0.90218 1.02123 0.97825 1.18844 0.96669 0.95502 1.00305 1.20109 0.92350 1.01165 1.02238 1.25629 1.00550 1.01292 1.06727 1.84314 1.05305 1.21771 1.53201 1.25455 0.96396 1.04212 1.08667 1.45799 1.65901 1.14741 1.08713 1.20449 0.78595 0.87013 0.84894 1.90743 1.48529 1.15458 1.84924 1.20008 0.80553 0.87192 0.84806 1.90712 1.50287 1.15375 1.85125 1.46218 1.62625 1.15174 1.09190 1.21931 0.98170 0.96275 0.82979 1.18367 0.93442 0.91772 0.90815 1.21854 0.97742 1.00109 0.99391 1.21858 0.96563 1.00536 1.00182 1.20919 1.44127 0.96273 0.93398 0.92413 1.24879 0.95045 0.94855 0.98672 1.69801 1.48110 1.07899 1.26461 0.86618 0.79450 0.79382 0.82306 1.20272 1.21312 1.20273 0.92106 0.91571 0.91336 0.89967 0.89082 0.84191 0.81802 0.81936 0.75421 0.75220 0.92044 0.92075 0.97287 0.89451 0.95377 0.95358 0.89433 0.97264 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 9.48 37.16 0.35 -0.98 16 2 C 0.15 1.33 2.56 -67.93 -0.17 1.15 16 3 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 4 C -0.07 -0.46 5.01 -27.89 -0.14 -0.60 16 5 C -0.10 -0.88 4.83 -106.25 -0.51 -1.39 16 6 C -0.13 -1.20 9.53 -41.21 -0.39 -1.60 16 7 C -0.21 -1.95 11.23 29.04 0.33 -1.62 16 8 S 0.09 0.81 23.34 -107.50 -2.51 -1.70 16 9 C -0.21 -1.83 10.98 29.04 0.32 -1.51 16 10 N -0.70 -8.02 4.59 -54.24 -0.25 -8.27 16 11 C 0.51 7.81 7.85 -11.58 -0.09 7.72 16 12 O -0.52 -9.00 16.14 5.50 0.09 -8.92 16 13 C 0.49 8.74 7.89 -11.59 -0.09 8.65 16 14 O -0.54 -10.21 16.48 5.49 0.09 -10.12 16 15 N -0.68 -12.79 4.95 -60.73 -0.30 -13.09 16 16 C 0.13 2.71 4.50 -4.04 -0.02 2.69 16 17 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 18 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 19 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 20 C -0.51 -13.25 8.01 -34.44 -0.28 -13.53 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 22 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 23 N -0.88 -23.67 9.35 55.43 0.52 -23.16 16 24 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 32 H 0.09 0.45 8.12 -51.92 -0.42 0.03 16 33 H 0.14 1.18 7.89 -52.49 -0.41 0.76 16 34 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.41 4.30 7.69 -40.82 -0.31 3.99 16 37 H 0.41 7.64 5.64 -40.82 -0.23 7.41 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 41 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 45 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 46 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -29.09 389.47 -8.67 -37.76 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.88 Total: 9.66 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.27 Total: -3.66 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.03 Total: -44.52 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.18 Total: -19.04 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.09 -8.67 -37.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569957004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.154 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds