Wall clock time and date at job start Tue Mar 31 2020 20:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50698 * 109.47721 * 175.00208 * 4 2 1 6 6 C 1.38424 * 122.54088 * 89.99465 * 5 4 2 7 7 C 1.33387 * 114.92263 * 179.97438 * 6 5 4 8 8 S 1.75884 * 109.59153 * 0.02562 * 7 6 5 9 9 C 1.33387 * 122.53872 * 269.71909 * 5 4 2 10 10 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 11 11 C 1.34779 * 119.99793 * 274.99565 * 10 2 1 12 12 O 1.21348 * 119.99941 * 0.02562 * 11 10 2 13 13 C 1.49452 * 119.99831 * 180.02562 * 11 10 2 14 14 O 1.21355 * 119.99739 * 359.97438 * 13 11 10 15 15 N 1.34774 * 120.00121 * 180.02562 * 13 11 10 16 16 C 1.46500 * 120.00083 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.47096 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47150 * 300.00060 * 17 16 15 19 19 C 1.53005 * 109.47170 * 59.99965 * 17 16 15 20 20 C 1.50699 * 109.47208 * 180.02562 * 17 16 15 21 21 H 1.07999 * 120.00040 * 0.02562 * 20 17 16 22 22 C 1.37875 * 120.00122 * 180.02562 * 20 17 16 23 23 N 1.31514 * 119.99744 * 359.97438 * 22 20 17 24 24 Si 1.86799 * 120.00324 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.46861 * 59.99547 * 24 22 20 26 26 H 1.48493 * 109.47402 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46977 * 300.00322 * 24 22 20 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 32 32 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 33 33 H 1.08001 * 122.53721 * 0.02562 * 6 5 4 34 34 H 1.08003 * 125.20504 * 179.97438 * 7 6 5 35 35 H 1.08004 * 125.20309 * 0.02562 * 9 5 4 36 36 H 0.97004 * 120.00223 * 94.99655 * 10 2 1 37 37 H 0.97004 * 119.99693 * 359.97438 * 15 13 11 38 38 H 1.09002 * 109.47216 * 299.99855 * 16 15 13 39 39 H 1.09002 * 109.46823 * 59.99996 * 16 15 13 40 40 H 1.09001 * 109.47089 * 60.00179 * 18 17 16 41 41 H 1.09000 * 109.47480 * 179.97438 * 18 17 16 42 42 H 1.09002 * 109.47361 * 300.00176 * 18 17 16 43 43 H 1.08998 * 109.46537 * 59.99860 * 19 17 16 44 44 H 1.08999 * 109.47117 * 179.97438 * 19 17 16 45 45 H 1.09001 * 109.46814 * 300.00039 * 19 17 16 46 46 H 0.97004 * 119.99561 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3128 6 6 4.3798 -1.5523 -0.7335 7 6 5.6829 -1.3095 -0.8823 8 16 5.9052 0.1757 -1.7980 9 6 4.1645 0.3864 -1.9362 10 7 2.0183 -0.6906 1.1962 11 6 2.1471 -0.0182 2.3571 12 8 1.8581 1.1591 2.4117 13 6 2.6458 -0.7226 3.5773 14 8 2.9343 -1.9001 3.5227 15 7 2.7741 -0.0504 4.7383 16 6 3.2624 -0.7410 5.9345 17 6 3.3140 0.2421 7.1057 18 6 4.2581 1.3959 6.7618 19 6 1.9114 0.7927 7.3715 20 6 3.8169 -0.4681 8.3360 21 1 4.0744 -1.5159 8.2873 22 6 3.9482 0.2196 9.5238 23 7 3.6351 1.4955 9.5829 24 14 4.5723 -0.6606 11.0486 25 1 5.9341 -1.1935 10.7901 26 1 4.6222 0.2936 12.1854 27 1 3.6573 -1.7816 11.3824 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.7516 -1.7715 -1.2056 32 1 1.6053 -0.2617 -2.1370 33 1 4.0067 -2.4153 -0.2021 34 1 6.4796 -1.9294 -0.4985 35 1 3.6747 1.2030 -2.4458 36 1 2.2490 -1.6318 1.1526 37 1 2.5431 0.8907 4.7819 38 1 2.5900 -1.5633 6.1792 39 1 4.2618 -1.1329 5.7452 40 1 3.8947 1.9098 5.8719 41 1 4.2945 2.0966 7.5960 42 1 5.2573 1.0037 6.5724 43 1 1.2389 -0.0293 7.6165 44 1 1.9480 1.4928 8.2062 45 1 1.5481 1.3065 6.4815 46 1 3.7279 1.9794 10.4184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569957004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:02 Heat of formation + Delta-G solvation = -68.007924 kcal Electronic energy + Delta-G solvation = -27083.225549 eV Core-core repulsion = 23291.545500 eV Total energy + Delta-G solvation = -3791.680049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.75517 -40.09890 -39.16242 -38.18644 -36.72577 -35.04904 -32.82714 -32.70287 -30.64392 -28.01793 -27.93044 -27.60017 -27.21941 -25.16885 -24.05515 -22.11158 -21.43362 -20.72000 -19.92952 -19.36933 -18.48615 -18.02682 -17.71359 -17.03295 -16.81773 -16.59503 -16.25160 -16.00534 -15.46138 -15.04573 -14.76505 -14.61956 -14.56845 -14.24653 -14.05838 -13.86238 -13.67803 -13.42670 -13.21466 -13.13213 -13.07654 -12.80033 -12.68806 -12.62797 -12.53420 -12.51945 -12.28206 -12.12541 -11.93746 -11.60043 -11.51598 -11.30603 -10.77071 -10.60526 -10.41196 -10.31191 -10.11388 -9.67999 -9.28017 -8.01840 -6.18691 0.12133 0.38997 0.79108 1.11326 1.39695 1.45877 1.47368 1.53857 1.78770 2.18840 2.45435 2.75224 3.21968 3.49097 3.83222 3.97365 4.09313 4.26024 4.34100 4.37459 4.46356 4.54636 4.63390 4.66752 4.75907 4.80359 4.91428 4.91737 5.02682 5.04736 5.06054 5.15040 5.15937 5.21872 5.30031 5.36077 5.47169 5.54399 5.59344 5.63644 5.66692 5.99894 6.10048 6.18101 6.40138 6.42966 6.78033 6.86417 6.99793 7.49408 8.97308 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.002464 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.398801 B =11362.473799 C =12178.565546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.077 0.923 4 C -0.059 4.059 5 C -0.110 4.110 6 C -0.139 4.139 7 C -0.224 4.224 8 S 0.076 5.924 9 C -0.215 4.215 10 N -0.679 5.679 11 C 0.514 3.486 12 O -0.544 6.544 13 C 0.495 3.505 14 O -0.550 6.550 15 N -0.683 5.683 16 C 0.144 3.856 17 C 0.052 3.948 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.529 4.529 21 H 0.052 0.948 22 C 0.027 3.973 23 N -0.901 5.901 24 Si 0.948 3.052 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.172 0.828 35 H 0.182 0.818 36 H 0.416 0.584 37 H 0.412 0.588 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.024 0.976 44 H 0.064 0.936 45 H 0.029 0.971 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -3.300 -26.053 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.095 0.905 4 C -0.099 4.099 5 C -0.122 4.122 6 C -0.169 4.169 7 C -0.359 4.359 8 S 0.340 5.660 9 C -0.350 4.350 10 N -0.332 5.332 11 C 0.294 3.706 12 O -0.421 6.421 13 C 0.276 3.724 14 O -0.429 6.429 15 N -0.335 5.335 16 C 0.021 3.979 17 C 0.051 3.949 18 C -0.181 4.181 19 C -0.182 4.182 20 C -0.567 4.567 21 H 0.070 0.930 22 C -0.173 4.173 23 N -0.540 5.540 24 Si 0.775 3.225 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.165 0.835 34 H 0.189 0.811 35 H 0.199 0.801 36 H 0.254 0.746 37 H 0.250 0.750 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.652 -2.314 -26.429 26.582 hybrid contribution -0.523 -1.100 1.845 2.211 sum -2.174 -3.414 -24.584 24.915 Atomic orbital electron populations 1.22173 0.93352 1.03363 1.03001 1.21264 0.94943 0.97031 0.82736 0.90451 1.20698 0.88791 1.03098 0.97303 1.19074 0.97748 0.95265 1.00161 1.20359 0.92536 1.01671 1.02339 1.25859 1.01128 1.01688 1.07201 1.84342 1.06387 1.21885 1.53356 1.25773 0.95914 1.04730 1.08620 1.45855 1.64111 1.14967 1.08248 1.19970 0.78974 0.86637 0.85044 1.90741 1.50048 1.16172 1.85173 1.20449 0.79747 0.87027 0.85201 1.90700 1.50706 1.16070 1.85460 1.46076 1.63132 1.15168 1.09085 1.21533 0.97675 0.95485 0.83223 1.18360 0.93464 0.92120 0.90948 1.21702 0.97571 0.99582 0.99247 1.21709 0.96422 0.99904 1.00142 1.21230 1.44435 0.96288 0.94768 0.93008 1.25499 0.95326 0.95486 1.00979 1.69922 1.48522 1.08706 1.26832 0.85767 0.78883 0.78416 0.79450 1.20092 1.21084 1.20034 0.90892 0.94120 0.88820 0.88328 0.86429 0.83507 0.81092 0.80054 0.74644 0.75025 0.92717 0.92891 0.95306 0.91769 0.95867 0.95721 0.91760 0.95220 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.48 71.98 0.68 -1.47 16 2 C 0.14 2.26 2.56 44.99 0.12 2.38 16 3 H 0.08 1.52 7.58 -2.39 -0.02 1.50 16 4 C -0.06 -0.60 5.01 29.85 0.15 -0.45 16 5 C -0.11 -1.67 4.83 -20.92 -0.10 -1.77 16 6 C -0.14 -2.39 9.53 21.22 0.20 -2.19 16 7 C -0.22 -4.04 11.23 66.72 0.75 -3.29 16 8 S 0.08 1.32 23.34 -56.49 -1.32 0.00 16 9 C -0.22 -3.29 10.98 66.72 0.73 -2.56 16 10 N -0.68 -14.35 4.59 -443.86 -2.04 -16.39 16 11 C 0.51 15.15 7.85 87.27 0.69 15.84 16 12 O -0.54 -18.29 16.14 -3.24 -0.05 -18.35 16 13 C 0.50 17.07 7.89 87.27 0.69 17.76 16 14 O -0.55 -20.45 16.48 -3.26 -0.05 -20.50 16 15 N -0.68 -25.25 4.95 -464.40 -2.30 -27.55 16 16 C 0.14 6.04 4.50 86.38 0.39 6.43 16 17 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 18 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 19 C -0.12 -5.70 8.08 71.98 0.58 -5.11 16 20 C -0.53 -27.70 8.01 25.60 0.21 -27.49 16 21 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 22 C 0.03 1.42 5.15 84.65 0.44 1.85 16 23 N -0.90 -48.61 9.35 21.45 0.20 -48.41 16 24 Si 0.95 42.34 29.54 68.60 2.03 44.36 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 26 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.73 8.13 -2.39 -0.02 0.71 16 32 H 0.12 0.65 8.12 -2.38 -0.02 0.63 16 33 H 0.15 2.22 7.89 -2.91 -0.02 2.20 16 34 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 35 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.42 7.85 7.69 -92.71 -0.71 7.14 16 37 H 0.41 15.01 5.64 -92.71 -0.52 14.48 16 38 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 41 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 42 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 45 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 46 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -62.02 389.47 2.31 -59.72 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.23 Total: 29.92 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 6.07 Total: -2.81 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -4.13 Total: -92.34 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.11 Total: -38.85 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -1.32 Total: 0.00 kcal Total: -62.02 2.31 -59.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569957004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.290 kcal (2) G-P(sol) polarization free energy of solvation -62.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds