Wall clock time and date at job start Tue Mar 31 2020 20:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47407 * 2 1 4 4 C 1.47206 * 109.47021 * 120.00412 * 2 1 3 5 5 N 2.60798 * 109.47095 * 120.00529 * 2 1 3 6 6 C 1.52997 * 109.46817 * 240.00219 * 2 1 3 7 7 N 1.46503 * 109.47269 * 65.00154 * 6 2 1 8 8 C 1.34771 * 120.00040 * 179.97438 * 7 6 2 9 9 O 1.21637 * 120.00303 * 359.97438 * 8 7 6 10 10 C 1.47176 * 119.99834 * 180.02562 * 8 7 6 11 11 C 1.41091 * 126.48158 * 0.02562 * 10 8 7 12 12 N 1.30459 * 108.30239 * 179.97438 * 11 10 8 13 13 N 1.39911 * 109.21748 * 0.02562 * 12 11 10 14 14 C 1.46503 * 125.80189 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.47200 * 90.02276 * 14 13 12 16 16 H 1.07996 * 119.99657 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99795 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99504 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00034 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47395 * 89.99750 * 19 17 15 21 21 H 1.48507 * 109.46764 * 209.99984 * 19 17 15 22 22 H 1.48500 * 109.47317 * 329.99537 * 19 17 15 23 23 C 1.35171 * 108.38680 * 359.74577 * 13 12 11 24 24 C 1.47738 * 126.47205 * 180.26770 * 23 13 12 25 25 C 1.39617 * 120.14819 * 314.89785 * 24 23 13 26 26 C 1.37949 * 119.84606 * 179.79043 * 25 24 23 27 27 C 1.38363 * 120.15007 * 0.47128 * 26 25 24 28 28 C 1.38360 * 120.30111 * 359.78161 * 27 26 25 29 29 C 1.37939 * 120.15032 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46733 * 299.99317 * 1 2 3 32 32 H 1.08992 * 109.47068 * 59.99046 * 1 2 3 33 33 H 1.09002 * 109.47196 * 185.00032 * 6 2 1 34 34 H 1.09001 * 109.47630 * 305.00128 * 6 2 1 35 35 H 0.97002 * 119.99507 * 359.97438 * 7 6 2 36 36 H 1.08002 * 125.84324 * 359.94586 * 11 10 8 37 37 H 1.09002 * 109.46548 * 210.01637 * 14 13 12 38 38 H 1.08992 * 109.47361 * 330.01564 * 14 13 12 39 39 H 0.97001 * 119.99674 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.07357 * 0.02672 * 25 24 23 41 41 H 1.08009 * 119.92368 * 180.23536 * 26 25 24 42 42 H 1.08006 * 119.84433 * 179.76674 * 27 26 25 43 43 H 1.07997 * 119.92223 * 180.02562 * 28 27 26 44 44 H 1.08001 * 120.07962 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6940 1.2019 5 7 2.3993 -1.2296 2.1293 6 6 2.0399 -0.7212 -1.2493 7 7 1.6524 0.0355 -2.4424 8 6 1.9963 -0.4129 -3.6659 9 8 2.6289 -1.4456 -3.7796 10 6 1.6074 0.3476 -4.8645 11 6 0.8789 1.5555 -4.8917 12 7 0.7337 1.9184 -6.1364 13 7 1.3519 0.9763 -6.9658 14 6 1.4071 1.0279 -8.4289 15 6 2.6409 1.7790 -8.8589 16 1 3.3160 2.1784 -8.1166 17 6 2.9076 1.9563 -10.2000 18 7 3.9840 2.6122 -10.5752 19 14 1.7394 1.2661 -11.4838 20 1 0.7059 2.2814 -11.8096 21 1 2.5005 0.9227 -12.7119 22 1 1.0831 0.0453 -10.9507 23 6 1.8939 0.0133 -6.1874 24 6 2.6456 -1.1711 -6.6509 25 6 2.1692 -1.9286 -7.7226 26 6 2.8783 -3.0308 -8.1531 27 6 4.0540 -3.3918 -7.5192 28 6 4.5290 -2.6485 -6.4532 29 6 3.8325 -1.5411 -6.0157 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8898 33 1 3.1263 -0.7995 -1.2057 34 1 1.6053 -1.7198 -1.2953 35 1 1.1482 0.8592 -2.3517 36 1 0.5050 2.0882 -4.0298 37 1 1.4420 0.0138 -8.8271 38 1 0.5212 1.5369 -8.8082 39 1 4.1719 2.7366 -11.5187 40 1 1.2497 -1.6501 -8.2158 41 1 2.5129 -3.6155 -8.9844 42 1 4.6033 -4.2578 -7.8579 43 1 5.4476 -2.9355 -5.9632 44 1 4.2046 -0.9615 -5.1838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581920833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:01 Heat of formation + Delta-G solvation = 89.799430 kcal Electronic energy + Delta-G solvation = -28298.696717 eV Core-core repulsion = 24410.708508 eV Total energy + Delta-G solvation = -3887.988208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02055 -39.23254 -38.40448 -37.61129 -35.47757 -33.97066 -32.72972 -32.17117 -31.56595 -30.49253 -28.74219 -28.08603 -26.80125 -24.15440 -23.01044 -22.63968 -22.14335 -21.67289 -20.03302 -19.41667 -18.02197 -17.36015 -17.23092 -16.36631 -15.97761 -15.69200 -15.54929 -14.95793 -14.73147 -14.42648 -14.37867 -14.03789 -13.84300 -13.62418 -13.54703 -13.25070 -13.21609 -13.09165 -12.76366 -12.67881 -12.54974 -12.26945 -12.18752 -12.06338 -11.66072 -11.46255 -11.28427 -11.07494 -10.91910 -10.69760 -10.48455 -10.36408 -9.81467 -9.57386 -9.24050 -9.11726 -8.85136 -8.46900 -8.27720 -7.88987 -6.33391 -4.37515 1.27306 1.84858 2.23715 2.30572 2.40517 2.61973 2.92072 3.10013 3.14365 3.16705 3.25714 3.74108 3.75857 4.14528 4.25251 4.25504 4.43008 4.65103 4.75620 4.88838 5.00535 5.21316 5.22569 5.24700 5.29304 5.36704 5.40644 5.44023 5.55716 5.62142 5.67914 5.80061 5.88366 6.07759 6.24766 6.27717 6.34246 6.38842 6.46607 6.76527 6.85205 6.89683 6.91018 7.15969 7.16378 7.30946 7.43424 7.56306 8.13487 8.19011 8.46458 8.69249 9.20266 10.78954 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.003139 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.921299 B = 8918.816500 C =10178.001496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.006 4.006 3 H 0.123 0.877 4 C 0.214 3.786 5 N -0.428 5.428 6 C 0.132 3.868 7 N -0.733 5.733 8 C 0.602 3.398 9 O -0.541 6.541 10 C -0.314 4.314 11 C 0.061 3.939 12 N -0.286 5.286 13 N -0.304 5.304 14 C 0.219 3.781 15 C -0.542 4.542 16 H 0.082 0.918 17 C 0.083 3.917 18 N -0.882 5.882 19 Si 0.870 3.130 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.264 1.264 23 C 0.204 3.796 24 C -0.032 4.032 25 C -0.093 4.093 26 C -0.130 4.130 27 C -0.109 4.109 28 C -0.130 4.130 29 C -0.036 4.036 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.400 0.600 36 H 0.181 0.819 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.270 0.730 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.633 -6.761 14.001 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 H 0.140 0.860 4 C -0.105 4.105 5 N -0.103 5.103 6 C 0.007 3.993 7 N -0.387 5.387 8 C 0.392 3.608 9 O -0.418 6.418 10 C -0.329 4.329 11 C -0.125 4.125 12 N -0.105 5.105 13 N -0.079 5.079 14 C 0.101 3.899 15 C -0.580 4.580 16 H 0.100 0.900 17 C -0.122 4.122 18 N -0.518 5.518 19 Si 0.696 3.304 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.188 1.188 23 C 0.068 3.932 24 C -0.033 4.033 25 C -0.111 4.111 26 C -0.148 4.148 27 C -0.127 4.127 28 C -0.148 4.148 29 C -0.055 4.055 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.235 0.765 36 H 0.198 0.802 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.012 -7.293 14.181 17.042 hybrid contribution -0.553 -0.006 -0.566 0.792 sum -6.565 -7.298 13.614 16.785 Atomic orbital electron populations 1.21874 0.91295 1.03871 1.03652 1.19048 0.97740 0.99681 0.86347 0.85960 1.28808 0.93447 0.93797 0.94413 1.81253 1.08578 1.08974 1.11528 1.21136 1.00834 0.95403 0.81927 1.45607 1.59911 1.28155 1.05017 1.17166 0.77992 0.83881 0.81752 1.90795 1.40386 1.24364 1.86281 1.19777 1.18693 1.02591 0.91878 1.23698 0.98609 0.94509 0.95689 1.77137 1.19184 1.13107 1.01119 1.49171 1.36391 1.14008 1.08380 1.20360 1.00222 0.99694 0.69644 1.21029 1.06532 1.36692 0.93747 0.90013 1.24754 0.95186 0.94297 0.97936 1.69856 1.25366 1.39600 1.16982 0.86945 0.81410 0.80125 0.81940 1.19501 1.20315 1.18822 1.19750 0.93560 0.90272 0.89630 1.17836 0.95343 0.92986 0.97180 1.21191 0.99789 0.94955 0.95211 1.20895 0.95975 0.97576 1.00385 1.21157 0.96117 0.99422 0.96024 1.20958 1.00172 0.96005 0.97639 1.21060 0.92259 0.95575 0.96626 0.91331 0.91347 0.90088 0.90596 0.90500 0.76539 0.80201 0.92548 0.93038 0.91980 0.86247 0.86155 0.86408 0.86153 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.02 37.16 0.34 -0.20 16 2 C -0.01 -0.03 2.80 -93.40 -0.26 -0.29 16 3 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 4 C 0.21 1.72 14.65 -20.76 -0.30 1.42 16 5 N -0.43 -4.85 18.54 42.15 0.78 -4.07 16 6 C 0.13 0.99 5.02 -4.04 -0.02 0.97 16 7 N -0.73 -6.46 5.28 -61.46 -0.32 -6.78 16 8 C 0.60 8.46 7.69 -12.63 -0.10 8.36 16 9 O -0.54 -9.08 12.95 5.24 0.07 -9.02 16 10 C -0.31 -5.10 6.13 -104.75 -0.64 -5.74 16 11 C 0.06 0.91 11.48 -17.05 -0.20 0.72 16 12 N -0.29 -5.55 12.48 30.82 0.38 -5.16 16 13 N -0.30 -6.42 3.59 -58.19 -0.21 -6.63 16 14 C 0.22 4.99 5.02 -5.19 -0.03 4.97 16 15 C -0.54 -14.66 9.94 -34.44 -0.34 -15.01 16 16 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 18 N -0.88 -25.63 13.96 55.43 0.77 -24.86 16 19 Si 0.87 19.58 27.47 -169.99 -4.67 14.91 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 23 C 0.20 3.96 6.50 -82.07 -0.53 3.43 16 24 C -0.03 -0.60 5.25 -104.98 -0.55 -1.15 16 25 C -0.09 -1.63 8.52 -39.17 -0.33 -1.97 16 26 C -0.13 -2.00 10.03 -39.64 -0.40 -2.40 16 27 C -0.11 -1.58 10.04 -39.49 -0.40 -1.98 16 28 C -0.13 -2.01 10.03 -39.65 -0.40 -2.40 16 29 C -0.04 -0.64 7.54 -39.17 -0.30 -0.93 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.21 7.18 -51.93 -0.37 -0.16 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.40 2.33 6.60 -40.82 -0.27 2.06 16 36 H 0.18 1.67 7.49 -52.49 -0.39 1.28 16 37 H 0.06 1.23 4.14 -51.93 -0.21 1.01 16 38 H 0.05 1.15 7.57 -51.93 -0.39 0.76 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.12 2.03 6.53 -52.49 -0.34 1.68 16 41 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 42 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.13 2.25 6.78 -52.49 -0.36 1.90 16 LS Contribution 377.68 15.07 5.69 5.69 Total: -1.00 -34.40 377.68 -7.37 -41.78 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.31 Total: 4.18 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -4.56 Total: -10.05 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 1.41 Total: -47.50 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.67 Total: 14.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.40 -7.37 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581920833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.575 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds