Wall clock time and date at job start Tue Mar 31 2020 20:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47407 * 2 1 4 4 C 1.47206 * 109.47021 * 120.00412 * 2 1 3 5 5 N 2.60798 * 109.47095 * 120.00529 * 2 1 3 6 6 C 1.52997 * 109.46817 * 240.00219 * 2 1 3 7 7 N 1.46503 * 109.47269 * 65.00154 * 6 2 1 8 8 C 1.34771 * 120.00040 * 179.97438 * 7 6 2 9 9 O 1.21637 * 120.00303 * 359.97438 * 8 7 6 10 10 C 1.47176 * 119.99834 * 180.02562 * 8 7 6 11 11 C 1.41091 * 126.48158 * 0.02562 * 10 8 7 12 12 N 1.30459 * 108.30239 * 179.97438 * 11 10 8 13 13 N 1.39911 * 109.21748 * 0.02562 * 12 11 10 14 14 C 1.46503 * 125.80189 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.47200 * 90.02276 * 14 13 12 16 16 H 1.07996 * 119.99657 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99795 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99504 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00034 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47395 * 89.99750 * 19 17 15 21 21 H 1.48507 * 109.46764 * 209.99984 * 19 17 15 22 22 H 1.48500 * 109.47317 * 329.99537 * 19 17 15 23 23 C 1.35171 * 108.38680 * 359.74577 * 13 12 11 24 24 C 1.47738 * 126.47205 * 180.26770 * 23 13 12 25 25 C 1.39617 * 120.14819 * 314.89785 * 24 23 13 26 26 C 1.37949 * 119.84606 * 179.79043 * 25 24 23 27 27 C 1.38363 * 120.15007 * 0.47128 * 26 25 24 28 28 C 1.38360 * 120.30111 * 359.78161 * 27 26 25 29 29 C 1.37939 * 120.15032 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46733 * 299.99317 * 1 2 3 32 32 H 1.08992 * 109.47068 * 59.99046 * 1 2 3 33 33 H 1.09002 * 109.47196 * 185.00032 * 6 2 1 34 34 H 1.09001 * 109.47630 * 305.00128 * 6 2 1 35 35 H 0.97002 * 119.99507 * 359.97438 * 7 6 2 36 36 H 1.08002 * 125.84324 * 359.94586 * 11 10 8 37 37 H 1.09002 * 109.46548 * 210.01637 * 14 13 12 38 38 H 1.08992 * 109.47361 * 330.01564 * 14 13 12 39 39 H 0.97001 * 119.99674 * 179.97438 * 18 17 15 40 40 H 1.07998 * 120.07357 * 0.02672 * 25 24 23 41 41 H 1.08009 * 119.92368 * 180.23536 * 26 25 24 42 42 H 1.08006 * 119.84433 * 179.76674 * 27 26 25 43 43 H 1.07997 * 119.92223 * 180.02562 * 28 27 26 44 44 H 1.08001 * 120.07962 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6940 1.2019 5 7 2.3993 -1.2296 2.1293 6 6 2.0399 -0.7212 -1.2493 7 7 1.6524 0.0355 -2.4424 8 6 1.9963 -0.4129 -3.6659 9 8 2.6289 -1.4456 -3.7796 10 6 1.6074 0.3476 -4.8645 11 6 0.8789 1.5555 -4.8917 12 7 0.7337 1.9184 -6.1364 13 7 1.3519 0.9763 -6.9658 14 6 1.4071 1.0279 -8.4289 15 6 2.6409 1.7790 -8.8589 16 1 3.3160 2.1784 -8.1166 17 6 2.9076 1.9563 -10.2000 18 7 3.9840 2.6122 -10.5752 19 14 1.7394 1.2661 -11.4838 20 1 0.7059 2.2814 -11.8096 21 1 2.5005 0.9227 -12.7119 22 1 1.0831 0.0453 -10.9507 23 6 1.8939 0.0133 -6.1874 24 6 2.6456 -1.1711 -6.6509 25 6 2.1692 -1.9286 -7.7226 26 6 2.8783 -3.0308 -8.1531 27 6 4.0540 -3.3918 -7.5192 28 6 4.5290 -2.6485 -6.4532 29 6 3.8325 -1.5411 -6.0157 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8898 33 1 3.1263 -0.7995 -1.2057 34 1 1.6053 -1.7198 -1.2953 35 1 1.1482 0.8592 -2.3517 36 1 0.5050 2.0882 -4.0298 37 1 1.4420 0.0138 -8.8271 38 1 0.5212 1.5369 -8.8082 39 1 4.1719 2.7366 -11.5187 40 1 1.2497 -1.6501 -8.2158 41 1 2.5129 -3.6155 -8.9844 42 1 4.6033 -4.2578 -7.8579 43 1 5.4476 -2.9355 -5.9632 44 1 4.2046 -0.9615 -5.1838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581920833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:00 Heat of formation + Delta-G solvation = 66.870011 kcal Electronic energy + Delta-G solvation = -28299.691011 eV Core-core repulsion = 24410.708508 eV Total energy + Delta-G solvation = -3888.982503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.34741 -40.23488 -39.64178 -38.37574 -36.29835 -35.74241 -34.06802 -33.29647 -32.97795 -31.74296 -29.96978 -29.71300 -27.52052 -25.38963 -24.33017 -23.76418 -23.47208 -22.75230 -21.19981 -20.73453 -19.27113 -19.08256 -18.18962 -17.46344 -17.11059 -16.71026 -16.59237 -16.37221 -16.03762 -15.66422 -15.45069 -15.19869 -15.02228 -14.87647 -14.59451 -14.44386 -14.35969 -13.98926 -13.95005 -13.85280 -13.67234 -13.51380 -13.39051 -13.09539 -12.61731 -12.59464 -12.31544 -12.19689 -12.13748 -11.94101 -11.88389 -11.83959 -11.76810 -10.90626 -10.78905 -10.63474 -10.04665 -9.74021 -9.66126 -9.18246 -8.41840 -6.52518 -0.02672 0.58817 0.94290 1.31749 1.34498 1.35824 1.43049 1.56183 1.70663 1.77740 2.24444 2.33577 2.58939 2.90458 2.98987 3.09720 3.49391 3.70239 3.78897 3.98747 4.00710 4.09172 4.15439 4.25866 4.30054 4.32816 4.50765 4.60788 4.62993 4.72962 4.76296 4.84405 4.92727 4.99970 5.02701 5.12955 5.18316 5.19079 5.40168 5.50942 5.54150 5.61615 5.63273 5.66315 5.81974 6.11150 6.19708 6.48758 6.53713 6.68970 6.82198 7.10266 7.44186 8.74776 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.003139 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.921299 B = 8918.816500 C =10178.001496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.008 3.992 3 H 0.157 0.843 4 C 0.241 3.759 5 N -0.489 5.489 6 C 0.133 3.867 7 N -0.706 5.706 8 C 0.602 3.398 9 O -0.570 6.570 10 C -0.312 4.312 11 C 0.085 3.915 12 N -0.327 5.327 13 N -0.333 5.333 14 C 0.231 3.769 15 C -0.547 4.547 16 H 0.025 0.975 17 C 0.025 3.975 18 N -0.934 5.934 19 Si 0.942 3.058 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.180 3.820 24 C -0.059 4.059 25 C -0.114 4.114 26 C -0.132 4.132 27 C -0.105 4.105 28 C -0.135 4.135 29 C -0.055 4.055 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.418 0.582 36 H 0.240 0.760 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.274 0.726 40 H 0.119 0.881 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.144 0.856 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.419 -7.737 14.468 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 H 0.174 0.826 4 C -0.077 4.077 5 N -0.165 5.165 6 C 0.008 3.992 7 N -0.360 5.360 8 C 0.390 3.610 9 O -0.451 6.451 10 C -0.328 4.328 11 C -0.101 4.101 12 N -0.146 5.146 13 N -0.109 5.109 14 C 0.111 3.889 15 C -0.585 4.585 16 H 0.043 0.957 17 C -0.175 4.175 18 N -0.573 5.573 19 Si 0.762 3.238 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.158 1.158 23 C 0.045 3.955 24 C -0.061 4.061 25 C -0.133 4.133 26 C -0.150 4.150 27 C -0.123 4.123 28 C -0.153 4.153 29 C -0.074 4.074 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.257 0.743 36 H 0.256 0.744 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.137 0.863 41 H 0.168 0.832 42 H 0.173 0.827 43 H 0.162 0.838 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.826 -8.253 14.712 18.596 hybrid contribution 0.087 0.308 -0.530 0.619 sum -7.740 -7.945 14.182 18.004 Atomic orbital electron populations 1.21928 0.89843 1.03818 1.05108 1.19165 0.98611 1.00359 0.83258 0.82587 1.29338 0.91787 0.92411 0.94172 1.81283 1.10664 1.10914 1.13671 1.21151 1.00384 0.95362 0.82284 1.45305 1.58575 1.28463 1.03691 1.16974 0.78030 0.83382 0.82578 1.90784 1.41790 1.25642 1.86839 1.20148 1.17841 1.03004 0.91771 1.24603 0.96180 0.93499 0.95838 1.77066 1.20893 1.13922 1.02740 1.48947 1.38668 1.15401 1.07848 1.20005 0.97868 0.99388 0.71618 1.21127 1.07446 1.36956 0.92978 0.95653 1.25759 0.96991 0.94380 1.00389 1.70020 1.27872 1.41604 1.17758 0.85810 0.79020 0.80583 0.78340 1.18489 1.19915 1.15820 1.20252 0.93866 0.90449 0.90926 1.18094 0.96120 0.93539 0.98339 1.21377 1.00421 0.96087 0.95438 1.21313 0.95901 0.96872 1.00891 1.21601 0.95789 0.99975 0.94969 1.21324 1.00755 0.95224 0.97993 1.21116 0.92666 0.96752 0.96900 0.92244 0.90178 0.88350 0.91558 0.91299 0.74341 0.74414 0.91346 0.92592 0.91728 0.86309 0.83186 0.82686 0.83802 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.02 71.98 0.65 0.11 16 2 C 0.01 0.05 2.80 -12.60 -0.04 0.01 16 3 H 0.16 0.06 8.14 -2.39 -0.02 0.05 16 4 C 0.24 3.48 14.65 89.44 1.31 4.79 16 5 N -0.49 -10.84 18.54 20.01 0.37 -10.47 16 6 C 0.13 1.70 5.02 86.38 0.43 2.14 16 7 N -0.71 -10.52 5.28 -466.61 -2.46 -12.98 16 8 C 0.60 16.25 7.69 86.59 0.67 16.91 16 9 O -0.57 -19.17 12.95 -4.15 -0.05 -19.23 16 10 C -0.31 -9.96 6.13 -19.95 -0.12 -10.09 16 11 C 0.08 2.37 11.48 85.60 0.98 3.35 16 12 N -0.33 -12.65 12.48 -56.40 -0.70 -13.36 16 13 N -0.33 -14.39 3.59 -338.02 -1.21 -15.60 16 14 C 0.23 10.73 5.02 85.63 0.43 11.16 16 15 C -0.55 -30.97 9.94 25.60 0.25 -30.72 16 16 H 0.03 1.66 8.06 -2.91 -0.02 1.64 16 17 C 0.02 1.39 5.47 84.65 0.46 1.85 16 18 N -0.93 -56.46 13.96 21.45 0.30 -56.16 16 19 Si 0.94 40.29 27.47 68.60 1.88 42.17 16 20 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.24 -8.91 6.54 99.48 0.65 -8.26 16 23 C 0.18 7.14 6.50 41.43 0.27 7.41 16 24 C -0.06 -2.29 5.25 -20.10 -0.11 -2.40 16 25 C -0.11 -4.03 8.52 22.53 0.19 -3.84 16 26 C -0.13 -3.84 10.03 22.23 0.22 -3.62 16 27 C -0.11 -2.84 10.04 22.33 0.22 -2.61 16 28 C -0.14 -4.09 10.03 22.23 0.22 -3.86 16 29 C -0.06 -2.00 7.54 22.53 0.17 -1.83 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 31 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.10 0.06 7.18 -2.39 -0.02 0.04 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.42 3.06 6.60 -92.71 -0.61 2.45 16 36 H 0.24 3.32 7.49 -2.91 -0.02 3.30 16 37 H 0.07 2.98 4.14 -2.39 -0.01 2.97 16 38 H 0.06 2.51 7.57 -2.39 -0.02 2.49 16 39 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.12 4.04 6.53 -2.91 -0.02 4.02 16 41 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 42 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 43 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 44 H 0.11 4.30 6.78 -2.91 -0.02 4.28 16 Total: -1.00 -82.57 377.68 4.74 -77.83 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.39 Total: 19.01 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 6.23 Total: -11.23 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -3.71 Total: -108.56 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.23 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.88 Total: 42.17 kcal Total: -82.57 4.74 -77.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581920833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.704 kcal (2) G-P(sol) polarization free energy of solvation -82.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds