Wall clock time and date at job start Tue Mar 31 2020 21:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46586 * 2 1 4 4 C 1.46891 * 111.00445 * 65.70247 * 3 2 1 5 5 C 1.52779 * 109.42341 * 187.11040 * 4 3 2 6 6 N 1.47081 * 108.76743 * 306.42222 * 5 4 3 7 7 S 1.65597 * 120.87812 * 231.12299 * 6 5 4 8 8 O 1.42100 * 106.39685 * 150.05880 * 7 6 5 9 9 O 1.42096 * 106.40628 * 17.13916 * 7 6 5 10 10 C 1.76205 * 107.21792 * 263.59378 * 7 6 5 11 11 C 1.38656 * 119.87196 * 90.00621 * 10 7 6 12 12 C 1.38615 * 120.49989 * 180.02562 * 11 10 7 13 13 C 1.37641 * 120.24806 * 0.02562 * 12 11 10 14 14 C 1.40699 * 119.74091 * 359.97438 * 13 12 11 15 15 C 1.41397 * 120.24007 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00248 * 328.42266 * 15 14 13 17 17 C 1.39940 * 119.99987 * 148.41535 * 15 14 13 18 18 N 1.30821 * 120.00336 * 335.21475 * 17 15 14 19 19 Si 1.86804 * 119.99941 * 155.20816 * 17 15 14 20 20 H 1.48496 * 109.47147 * 60.00228 * 19 17 15 21 21 H 1.48500 * 109.47168 * 300.00078 * 19 17 15 22 22 H 1.48503 * 109.46851 * 180.02562 * 19 17 15 23 23 C 1.37592 * 119.87835 * 270.33112 * 10 7 6 24 24 C 1.47074 * 118.23651 * 50.85249 * 6 5 4 25 25 H 1.08996 * 109.62788 * 68.79457 * 24 6 5 26 26 C 1.52992 * 109.62886 * 189.18461 * 24 6 5 27 27 C 1.46906 * 110.99378 * 190.00298 * 3 2 1 28 28 H 1.09000 * 109.46994 * 299.99830 * 1 2 3 29 29 H 1.08997 * 109.47563 * 60.00081 * 1 2 3 30 30 H 1.08998 * 109.46965 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46994 * 240.00170 * 2 1 3 32 32 H 1.09003 * 109.47151 * 119.99936 * 2 1 3 33 33 H 1.09003 * 109.49115 * 307.21282 * 4 3 2 34 34 H 1.09002 * 109.49715 * 67.28666 * 4 3 2 35 35 H 1.09007 * 109.55462 * 186.60755 * 5 4 3 36 36 H 1.09001 * 109.45630 * 66.18343 * 5 4 3 37 37 H 1.07997 * 119.75259 * 0.02562 * 11 10 7 38 38 H 1.07997 * 119.87498 * 180.02562 * 12 11 10 39 39 H 1.07995 * 120.12655 * 179.97438 * 13 12 11 40 40 H 0.97004 * 119.99488 * 354.17714 * 18 17 15 41 41 H 1.08006 * 120.12904 * 359.97438 * 23 10 7 42 42 H 1.08999 * 109.47362 * 65.89777 * 26 24 6 43 43 H 1.09001 * 109.47556 * 185.89619 * 26 24 6 44 44 H 1.08997 * 109.47133 * 305.89340 * 26 24 6 45 45 H 1.08997 * 109.49639 * 52.78909 * 27 3 2 46 46 H 1.09002 * 109.49003 * 292.70244 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6631 2.0695 1.2498 5 6 2.0301 3.5486 1.1417 6 7 3.4446 3.6580 0.7538 7 16 4.4890 4.6163 1.6100 8 8 5.7716 4.0160 1.4932 9 8 3.8632 4.8759 2.8590 10 6 4.5852 6.1627 0.7707 11 6 3.7048 7.1824 1.0988 12 6 3.7685 8.4038 0.4465 13 6 4.7084 8.6169 -0.5362 14 6 5.6069 7.5892 -0.8773 15 6 6.5770 7.7968 -1.8849 16 1 6.3620 8.4543 -2.7143 17 6 7.8157 7.1504 -1.8072 18 7 8.2816 6.7664 -0.6467 19 14 8.8040 6.8358 -3.3609 20 1 9.1151 8.1295 -4.0202 21 1 8.0132 5.9859 -4.2870 22 1 10.0690 6.1413 -3.0107 23 6 5.5292 6.3514 -0.2124 24 6 3.9082 2.8890 -0.4111 25 1 3.4673 3.2991 -1.3196 26 6 5.4336 2.9626 -0.5015 27 6 3.4685 1.4312 -0.2382 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5918 1.9711 1.4256 34 1 2.2106 1.6214 2.0790 35 1 1.8761 4.0342 2.1054 36 1 1.4051 4.0234 0.3853 37 1 2.9639 7.0239 1.8683 38 1 3.0781 9.1913 0.7104 39 1 4.7560 9.5691 -1.0434 40 1 7.8106 7.0035 0.1675 41 1 6.2108 5.5541 -0.4697 42 1 5.8735 2.4524 0.3554 43 1 5.7668 2.4815 -1.4211 44 1 5.7475 4.0064 -0.5033 45 1 3.7066 0.8699 -1.1417 46 1 3.9909 0.9920 0.6116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586772629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:50 Heat of formation + Delta-G solvation = -57.118968 kcal Electronic energy + Delta-G solvation = -28850.078582 eV Core-core repulsion = 25058.870715 eV Total energy + Delta-G solvation = -3791.207868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.31919 -39.69885 -38.62690 -37.04364 -36.42113 -35.83932 -33.45796 -32.11177 -31.51278 -31.35111 -28.75155 -27.14394 -26.22619 -24.31196 -23.70200 -23.09107 -22.46396 -21.58638 -20.44666 -19.58246 -18.24488 -18.04177 -17.40690 -16.76432 -16.47380 -16.36865 -16.20997 -15.89331 -15.78791 -15.60107 -15.44011 -15.12173 -14.55779 -14.34675 -14.16844 -14.07926 -13.54312 -13.52342 -13.31150 -13.21488 -13.01741 -12.99553 -12.81682 -12.78884 -12.58856 -12.41720 -12.34976 -12.23503 -12.05081 -11.98140 -11.63300 -11.56015 -11.26650 -11.24267 -10.94062 -10.23277 -10.01522 -9.66379 -9.29339 -9.24330 -6.55715 -0.62361 0.22071 0.75515 1.50110 1.58177 1.79027 1.94023 2.32697 2.52242 2.69049 2.85394 3.27565 3.31971 3.53679 3.83393 4.00599 4.11306 4.16694 4.21446 4.27415 4.31284 4.39139 4.43873 4.52414 4.61427 4.63035 4.66797 4.70150 4.71368 4.80374 4.90702 4.94731 4.96155 5.09426 5.13605 5.16073 5.20790 5.39239 5.40714 5.46742 5.59479 5.64027 5.67822 5.71236 6.03089 6.04656 6.12787 6.15372 6.62281 6.82636 8.00781 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.004209 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.021017 B = 6651.174496 C = 7576.427223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 N -0.543 5.543 4 C 0.045 3.955 5 C 0.113 3.887 6 N -0.991 5.991 7 S 2.700 3.300 8 O -0.981 6.981 9 O -0.989 6.989 10 C -0.638 4.638 11 C -0.159 4.159 12 C -0.100 4.100 13 C -0.193 4.193 14 C 0.050 3.950 15 C -0.559 4.559 16 H 0.080 0.920 17 C 0.003 3.997 18 N -0.817 5.817 19 Si 1.112 2.888 20 H -0.256 1.256 21 H -0.258 1.258 22 H -0.274 1.274 23 C -0.128 4.128 24 C 0.160 3.840 25 H 0.085 0.915 26 C -0.189 4.189 27 C 0.056 3.944 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.115 0.885 34 H 0.031 0.969 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.112 0.888 40 H 0.277 0.723 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.107 0.893 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.908 -12.214 -1.151 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 N -0.268 5.268 4 C -0.085 4.085 5 C -0.011 4.011 6 N -0.831 5.831 7 S 2.796 3.204 8 O -0.971 6.971 9 O -0.980 6.980 10 C -0.726 4.726 11 C -0.180 4.180 12 C -0.118 4.118 13 C -0.213 4.213 14 C 0.047 3.953 15 C -0.588 4.588 16 H 0.098 0.902 17 C -0.212 4.212 18 N -0.440 5.440 19 Si 0.928 3.072 20 H -0.180 1.180 21 H -0.182 1.182 22 H -0.198 1.198 23 C -0.149 4.149 24 C 0.054 3.946 25 H 0.103 0.897 26 C -0.247 4.247 27 C -0.074 4.074 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.133 0.867 34 H 0.050 0.950 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.130 0.870 40 H 0.089 0.911 41 H 0.130 0.870 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.069 0.931 45 H 0.125 0.875 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.310 -12.915 -1.249 17.213 hybrid contribution -0.807 1.352 1.014 1.873 sum -12.117 -11.563 -0.235 16.751 Atomic orbital electron populations 1.21782 0.93657 1.02382 1.02403 1.22171 0.97043 0.87359 1.01268 1.61936 1.13114 1.16974 1.34804 1.22435 1.02699 0.92971 0.90359 1.21718 0.79445 0.97985 1.01974 1.57687 1.21698 1.59207 1.44545 1.01451 0.72902 0.73209 0.72830 1.93647 1.41298 1.75492 1.86700 1.93439 1.77436 1.86240 1.40836 1.30467 1.06853 1.21654 1.13666 1.20477 1.00513 0.94190 1.02796 1.21133 0.97936 0.97071 0.95698 1.21568 1.00704 0.98040 1.00971 1.18135 0.93644 0.91264 0.92248 1.20707 1.00713 1.28671 1.08697 0.90219 1.28448 0.97493 0.90286 1.05024 1.70619 1.38752 1.34630 0.99997 0.83093 0.75012 0.78821 0.70251 1.18001 1.18186 1.19831 1.21039 0.98281 0.97544 0.97988 1.21175 0.93868 0.91761 0.87749 0.89709 1.22792 0.93799 1.03773 1.04374 1.22453 0.87958 0.94797 1.02166 0.92445 0.92200 0.90954 0.89824 0.94896 0.86716 0.95027 0.88471 0.89554 0.85110 0.84285 0.86991 0.91098 0.86999 0.90071 0.89278 0.93080 0.87465 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.84 71.98 0.71 -1.08 16 2 C 0.05 0.75 5.68 86.30 0.49 1.24 16 3 N -0.54 -11.06 4.63 -896.16 -4.15 -15.21 16 4 C 0.04 0.92 5.44 86.23 0.47 1.39 16 5 C 0.11 2.86 6.65 86.19 0.57 3.44 16 6 N -0.99 -31.40 3.34 -490.73 -1.64 -33.04 16 7 S 2.70 109.01 5.31 -56.49 -0.30 108.71 16 8 O -0.98 -44.37 12.45 -128.00 -1.59 -45.97 16 9 O -0.99 -41.48 15.74 -128.00 -2.01 -43.50 16 10 C -0.64 -29.12 5.96 22.22 0.13 -28.98 16 11 C -0.16 -6.77 9.53 22.46 0.21 -6.55 16 12 C -0.10 -4.14 10.02 22.22 0.22 -3.92 16 13 C -0.19 -9.09 9.80 22.73 0.22 -8.87 16 14 C 0.05 2.66 5.14 -21.29 -0.11 2.55 16 15 C -0.56 -29.60 8.96 23.46 0.21 -29.39 16 16 H 0.08 4.05 7.96 -2.91 -0.02 4.02 16 17 C 0.00 0.16 4.91 85.26 0.42 0.58 16 18 N -0.82 -45.47 12.55 21.82 0.27 -45.20 16 19 Si 1.11 42.85 30.00 68.60 2.06 44.91 16 20 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 21 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 22 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 23 C -0.13 -6.55 6.96 22.73 0.16 -6.39 16 24 C 0.16 4.65 3.67 44.96 0.16 4.82 16 25 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 26 C -0.19 -6.40 7.55 71.98 0.54 -5.86 16 27 C 0.06 1.27 4.92 86.38 0.43 1.70 16 28 H 0.06 0.69 6.40 -2.39 -0.02 0.67 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 1.15 7.97 -2.39 -0.02 1.13 16 32 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 33 H 0.11 1.77 6.16 -2.39 -0.01 1.76 16 34 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.10 2.46 6.81 -2.38 -0.02 2.44 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.13 4.88 7.60 -2.91 -0.02 4.85 16 38 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.28 16.28 6.94 -92.71 -0.64 15.64 16 41 H 0.11 6.00 4.37 -2.91 -0.01 5.99 16 42 H 0.08 2.89 6.54 -2.39 -0.02 2.88 16 43 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.05 2.11 3.26 -2.39 -0.01 2.11 16 45 H 0.11 1.98 7.99 -2.39 -0.02 1.96 16 46 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -66.59 363.60 -1.41 -68.00 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: 1.11 Total: 36.61 kcal Atomic # 6 Polarization: -80.17 SS G_CDS: 4.84 Total: -75.32 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -5.51 Total: -93.45 kcal Atomic # 8 Polarization: -85.85 SS G_CDS: -3.61 Total: -89.46 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.06 Total: 44.91 kcal Atomic # 16 Polarization: 109.01 SS G_CDS: -0.30 Total: 108.71 kcal Total: -66.59 -1.41 -68.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586772629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.884 kcal (2) G-P(sol) polarization free energy of solvation -66.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds