Wall clock time and date at job start Tue Mar 31 2020 20:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65599 * 120.00563 * 2 1 4 4 O 1.42097 * 106.40377 * 311.46513 * 3 2 1 5 5 O 1.42097 * 106.40620 * 178.54206 * 3 2 1 6 6 C 1.76202 * 107.21296 * 64.99994 * 3 2 1 7 7 C 1.38308 * 119.86839 * 90.00565 * 6 3 2 8 8 C 1.38300 * 119.88702 * 179.87198 * 7 6 3 9 9 C 1.37922 * 120.07506 * 0.02562 * 8 7 6 10 10 C 1.38960 * 120.48946 * 0.22985 * 9 8 7 11 11 C 1.37907 * 119.86841 * 269.97494 * 6 3 2 12 12 N 1.40302 * 111.04750 * 179.40149 * 10 9 8 13 13 C 1.46897 * 111.20667 * 139.96241 * 12 10 9 14 14 C 1.52998 * 109.47296 * 174.47094 * 13 12 10 15 15 H 1.08994 * 109.47374 * 55.32906 * 14 13 12 16 16 C 1.52998 * 109.46961 * 295.33020 * 14 13 12 17 17 C 1.52997 * 109.46980 * 175.33276 * 14 13 12 18 18 C 1.50706 * 109.46754 * 184.99751 * 17 14 13 19 19 H 1.07993 * 120.00178 * 0.02562 * 18 17 14 20 20 C 1.37884 * 119.99812 * 179.97438 * 18 17 14 21 21 N 1.31516 * 119.99885 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47564 * 59.99772 * 22 20 18 24 24 H 1.48498 * 109.46947 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46880 * 299.99364 * 22 20 18 26 26 C 1.47918 * 107.73555 * 18.11652 * 12 10 9 27 27 C 1.51572 * 131.55306 * 180.24880 * 9 8 7 28 28 H 1.09003 * 109.47146 * 299.99995 * 1 2 3 29 29 H 1.09003 * 109.46872 * 59.99787 * 1 2 3 30 30 H 1.08992 * 109.47785 * 179.97438 * 1 2 3 31 31 H 0.97002 * 119.99678 * 180.02562 * 2 1 3 32 32 H 1.08005 * 120.05381 * 359.88956 * 7 6 3 33 33 H 1.08000 * 119.96513 * 180.02562 * 8 7 6 34 34 H 1.07995 * 119.90173 * 0.02688 * 11 6 3 35 35 H 1.09001 * 109.47260 * 294.47106 * 13 12 10 36 36 H 1.08993 * 109.46965 * 54.46733 * 13 12 10 37 37 H 1.09000 * 109.47386 * 64.82043 * 16 14 13 38 38 H 1.09008 * 109.47471 * 184.82387 * 16 14 13 39 39 H 1.09009 * 109.47336 * 304.82033 * 16 14 13 40 40 H 1.08995 * 109.47091 * 304.99483 * 17 14 13 41 41 H 1.08994 * 109.47655 * 64.99989 * 17 14 13 42 42 H 0.97000 * 119.99903 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.78005 * 214.59212 * 26 12 10 44 44 H 1.08999 * 110.77546 * 91.34425 * 26 12 10 45 45 H 1.08996 * 110.74613 * 45.69386 * 27 9 8 46 46 H 1.08993 * 110.74551 * 282.35916 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4340 0.0000 4 8 1.7121 2.2329 -1.0215 5 8 3.6739 1.1002 0.0347 6 6 1.9379 2.2413 1.5254 7 6 2.7404 2.0134 2.6285 8 6 2.4635 2.6488 3.8253 9 6 1.3887 3.5080 3.9191 10 6 0.5731 3.7398 2.8182 11 6 0.8612 3.0984 1.6144 12 7 -0.4622 4.6314 3.1369 13 6 -0.7050 5.5778 2.0400 14 6 -1.9262 6.4384 2.3697 15 1 -1.7778 6.9259 3.3332 16 6 -3.1722 5.5528 2.4328 17 6 -2.1099 7.5004 1.2838 18 6 -3.2364 8.4240 1.6699 19 1 -3.7679 8.2692 2.5972 20 6 -3.5880 9.4672 0.8396 21 7 -2.9398 9.6566 -0.2889 22 14 -4.9838 10.6124 1.3185 23 1 -4.6614 11.2736 2.6085 24 1 -5.1614 11.6439 0.2651 25 1 -6.2381 9.8306 1.4629 26 6 -0.0787 5.3429 4.3757 27 6 0.8576 4.3312 5.0757 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 1.9499 -0.8401 -0.0004 32 1 3.5821 1.3405 2.5554 33 1 3.0896 2.4721 4.6874 34 1 0.2384 3.2721 0.7494 35 1 0.1676 6.2187 1.9132 36 1 -0.8875 5.0261 1.1179 37 1 -3.0779 4.8514 3.2619 38 1 -4.0539 6.1760 2.5826 39 1 -3.2726 4.9998 1.4988 40 1 -1.1895 8.0746 1.1777 41 1 -2.3464 7.0149 0.3370 42 1 -3.1868 10.3907 -0.8728 43 1 -0.9549 5.5485 4.9906 44 1 0.4534 6.2653 4.1429 45 1 1.6699 4.8473 5.5875 46 1 0.2984 3.7048 5.7707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589823067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:07 Heat of formation + Delta-G solvation = -47.329466 kcal Electronic energy + Delta-G solvation = -27427.853226 eV Core-core repulsion = 23637.069863 eV Total energy + Delta-G solvation = -3790.783363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88160 -37.42775 -37.31991 -36.00881 -35.27855 -35.10864 -32.86508 -31.86767 -29.65389 -29.31992 -26.87391 -26.26812 -25.61751 -23.49776 -23.10604 -22.03492 -21.17841 -19.62373 -18.85461 -18.04387 -17.61371 -16.69025 -16.43196 -16.17798 -15.68523 -15.65325 -14.84047 -14.82534 -14.44714 -14.28431 -14.02821 -13.90280 -13.49283 -13.11826 -12.95901 -12.89432 -12.54672 -12.30440 -12.20854 -12.16614 -12.08272 -11.86364 -11.82156 -11.59018 -11.49100 -11.23418 -10.91288 -10.88183 -10.86338 -10.56970 -10.33857 -9.95457 -9.90654 -9.74375 -9.30295 -9.24470 -9.02192 -8.35644 -7.80565 -6.00054 -4.02078 0.18456 0.66371 1.17069 2.77151 3.25677 3.32232 3.37300 3.38969 3.56185 3.76452 4.24034 4.30086 4.45600 4.49308 4.73075 4.75900 4.93835 5.00670 5.10760 5.18644 5.25071 5.35306 5.43015 5.46129 5.50006 5.53024 5.61117 5.65807 5.67168 5.79425 5.85022 5.98361 6.00336 6.16492 6.23721 6.37271 6.44458 6.56985 6.60946 6.84687 6.93967 7.09817 7.16365 7.20218 7.64161 7.78399 7.98664 8.41254 9.03646 9.61427 11.11304 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.002854 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.583111 B = 9809.781274 C =10909.027935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.121 6.121 3 S 2.698 3.302 4 O -0.951 6.951 5 O -0.961 6.961 6 C -0.650 4.650 7 C -0.054 4.054 8 C -0.101 4.101 9 C -0.092 4.092 10 C 0.091 3.909 11 C -0.045 4.045 12 N -0.469 5.469 13 C 0.049 3.951 14 C -0.082 4.082 15 H 0.058 0.942 16 C -0.125 4.125 17 C 0.028 3.972 18 C -0.516 4.516 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.046 3.954 27 C -0.090 4.090 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.417 0.583 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.038 0.962 38 H 0.060 0.940 39 H 0.041 0.959 40 H 0.014 0.986 41 H 0.018 0.982 42 H 0.261 0.739 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.280 -20.849 8.011 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.880 5.880 3 S 2.787 3.213 4 O -0.941 6.941 5 O -0.951 6.951 6 C -0.738 4.738 7 C -0.074 4.074 8 C -0.121 4.121 9 C -0.095 4.095 10 C -0.009 4.009 11 C -0.067 4.067 12 N -0.182 5.182 13 C -0.076 4.076 14 C -0.101 4.101 15 H 0.077 0.923 16 C -0.183 4.183 17 C -0.010 4.010 18 C -0.554 4.554 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.080 4.080 27 C -0.128 4.128 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.251 0.749 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.032 0.968 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.118 0.882 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.119 -20.430 7.262 23.927 hybrid contribution -0.362 0.813 0.810 1.203 sum 9.757 -19.617 8.072 23.350 Atomic orbital electron populations 1.21533 0.78172 1.04239 1.02534 1.55311 1.16345 1.24260 1.92113 1.01805 0.72822 0.72722 0.73957 1.93620 1.78513 1.68169 1.53779 1.93584 1.30780 1.83500 1.87265 1.30555 1.06602 1.15113 1.21524 1.20662 0.97404 0.98115 0.91235 1.20461 0.96821 0.96788 0.97993 1.20906 0.94524 0.98183 0.95930 1.19930 0.90076 0.97117 0.93778 1.20198 0.95276 0.94733 0.96530 1.60636 1.34601 1.17003 1.05965 1.22704 0.99605 0.93059 0.92190 1.21256 0.92033 0.95672 1.01093 0.92345 1.21624 0.98390 0.98415 0.99840 1.19115 0.96897 0.92072 0.92919 1.21148 1.16778 1.11862 1.05623 0.92604 1.25019 0.96668 0.97708 0.95059 1.69954 1.40982 1.31108 1.11351 0.86683 0.82796 0.80604 0.78053 1.20336 1.21338 1.20249 1.23289 0.98952 0.95797 0.89918 1.21463 0.98961 0.96510 0.95837 0.91878 0.91054 0.89913 0.74884 0.84307 0.85281 0.84196 0.93662 0.90317 0.94296 0.92148 0.94006 0.96804 0.96351 0.92945 0.88237 0.91571 0.89625 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 11.14 59.85 0.67 1.22 16 2 N -1.12 -8.44 6.19 -16.64 -0.10 -8.54 16 3 S 2.70 30.34 5.73 -107.50 -0.62 29.72 16 4 O -0.95 -14.05 16.99 -57.17 -0.97 -15.02 16 5 O -0.96 -12.58 17.27 -57.17 -0.99 -13.56 16 6 C -0.65 -7.68 5.94 -39.68 -0.24 -7.91 16 7 C -0.05 -0.57 9.53 -39.53 -0.38 -0.95 16 8 C -0.10 -1.04 10.03 -39.67 -0.40 -1.44 16 9 C -0.09 -1.09 6.23 -104.04 -0.65 -1.74 16 10 C 0.09 1.27 5.97 -83.28 -0.50 0.77 16 11 C -0.05 -0.61 8.99 -39.27 -0.35 -0.96 16 12 N -0.47 -6.86 4.59 -168.92 -0.77 -7.63 16 13 C 0.05 0.84 4.04 -3.83 -0.02 0.83 16 14 C -0.08 -1.60 2.29 -90.62 -0.21 -1.81 16 15 H 0.06 1.13 7.16 -51.93 -0.37 0.76 16 16 C -0.13 -2.33 8.90 37.16 0.33 -2.00 16 17 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 18 C -0.52 -14.16 8.34 -34.43 -0.29 -14.45 16 19 H 0.06 1.48 7.08 -52.49 -0.37 1.11 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 22 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.05 0.57 5.75 -2.42 -0.01 0.56 16 27 C -0.09 -0.90 7.04 -26.61 -0.19 -1.09 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.53 8.10 -51.93 -0.42 0.10 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.42 2.12 8.96 -34.47 -0.31 1.81 16 32 H 0.14 1.18 7.61 -52.48 -0.40 0.79 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.14 1.88 6.80 -52.49 -0.36 1.53 16 35 H 0.05 0.80 7.96 -51.93 -0.41 0.38 16 36 H 0.08 1.36 7.08 -51.93 -0.37 0.99 16 37 H 0.04 0.64 7.88 -51.93 -0.41 0.23 16 38 H 0.06 1.21 6.83 -51.92 -0.35 0.86 16 39 H 0.04 0.77 8.14 -51.92 -0.42 0.34 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 44 H 0.07 0.85 7.75 -51.93 -0.40 0.44 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -34.72 383.62 -11.51 -46.23 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.11 Total: -0.51 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: -2.44 Total: -26.89 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.14 Total: -42.18 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -1.96 Total: -28.59 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 30.34 SS G_CDS: -0.62 Total: 29.72 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.72 -11.51 -46.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589823067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.102 kcal (2) G-P(sol) polarization free energy of solvation -34.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds