Wall clock time and date at job start Tue Mar 31 2020 20:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65599 * 120.00563 * 2 1 4 4 O 1.42097 * 106.40377 * 311.46513 * 3 2 1 5 5 O 1.42097 * 106.40620 * 178.54206 * 3 2 1 6 6 C 1.76202 * 107.21296 * 64.99994 * 3 2 1 7 7 C 1.38308 * 119.86839 * 90.00565 * 6 3 2 8 8 C 1.38300 * 119.88702 * 179.87198 * 7 6 3 9 9 C 1.37922 * 120.07506 * 0.02562 * 8 7 6 10 10 C 1.38960 * 120.48946 * 0.22985 * 9 8 7 11 11 C 1.37907 * 119.86841 * 269.97494 * 6 3 2 12 12 N 1.40302 * 111.04750 * 179.40149 * 10 9 8 13 13 C 1.46897 * 111.20667 * 139.96241 * 12 10 9 14 14 C 1.52998 * 109.47296 * 174.47094 * 13 12 10 15 15 H 1.08994 * 109.47374 * 55.32906 * 14 13 12 16 16 C 1.52998 * 109.46961 * 295.33020 * 14 13 12 17 17 C 1.52997 * 109.46980 * 175.33276 * 14 13 12 18 18 C 1.50706 * 109.46754 * 184.99751 * 17 14 13 19 19 H 1.07993 * 120.00178 * 0.02562 * 18 17 14 20 20 C 1.37884 * 119.99812 * 179.97438 * 18 17 14 21 21 N 1.31516 * 119.99885 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99975 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47564 * 59.99772 * 22 20 18 24 24 H 1.48498 * 109.46947 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46880 * 299.99364 * 22 20 18 26 26 C 1.47918 * 107.73555 * 18.11652 * 12 10 9 27 27 C 1.51572 * 131.55306 * 180.24880 * 9 8 7 28 28 H 1.09003 * 109.47146 * 299.99995 * 1 2 3 29 29 H 1.09003 * 109.46872 * 59.99787 * 1 2 3 30 30 H 1.08992 * 109.47785 * 179.97438 * 1 2 3 31 31 H 0.97002 * 119.99678 * 180.02562 * 2 1 3 32 32 H 1.08005 * 120.05381 * 359.88956 * 7 6 3 33 33 H 1.08000 * 119.96513 * 180.02562 * 8 7 6 34 34 H 1.07995 * 119.90173 * 0.02688 * 11 6 3 35 35 H 1.09001 * 109.47260 * 294.47106 * 13 12 10 36 36 H 1.08993 * 109.46965 * 54.46733 * 13 12 10 37 37 H 1.09000 * 109.47386 * 64.82043 * 16 14 13 38 38 H 1.09008 * 109.47471 * 184.82387 * 16 14 13 39 39 H 1.09009 * 109.47336 * 304.82033 * 16 14 13 40 40 H 1.08995 * 109.47091 * 304.99483 * 17 14 13 41 41 H 1.08994 * 109.47655 * 64.99989 * 17 14 13 42 42 H 0.97000 * 119.99903 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.78005 * 214.59212 * 26 12 10 44 44 H 1.08999 * 110.77546 * 91.34425 * 26 12 10 45 45 H 1.08996 * 110.74613 * 45.69386 * 27 9 8 46 46 H 1.08993 * 110.74551 * 282.35916 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4340 0.0000 4 8 1.7121 2.2329 -1.0215 5 8 3.6739 1.1002 0.0347 6 6 1.9379 2.2413 1.5254 7 6 2.7404 2.0134 2.6285 8 6 2.4635 2.6488 3.8253 9 6 1.3887 3.5080 3.9191 10 6 0.5731 3.7398 2.8182 11 6 0.8612 3.0984 1.6144 12 7 -0.4622 4.6314 3.1369 13 6 -0.7050 5.5778 2.0400 14 6 -1.9262 6.4384 2.3697 15 1 -1.7778 6.9259 3.3332 16 6 -3.1722 5.5528 2.4328 17 6 -2.1099 7.5004 1.2838 18 6 -3.2364 8.4240 1.6699 19 1 -3.7679 8.2692 2.5972 20 6 -3.5880 9.4672 0.8396 21 7 -2.9398 9.6566 -0.2889 22 14 -4.9838 10.6124 1.3185 23 1 -4.6614 11.2736 2.6085 24 1 -5.1614 11.6439 0.2651 25 1 -6.2381 9.8306 1.4629 26 6 -0.0787 5.3429 4.3757 27 6 0.8576 4.3312 5.0757 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 1.9499 -0.8401 -0.0004 32 1 3.5821 1.3405 2.5554 33 1 3.0896 2.4721 4.6874 34 1 0.2384 3.2721 0.7494 35 1 0.1676 6.2187 1.9132 36 1 -0.8875 5.0261 1.1179 37 1 -3.0779 4.8514 3.2619 38 1 -4.0539 6.1760 2.5826 39 1 -3.2726 4.9998 1.4988 40 1 -1.1895 8.0746 1.1777 41 1 -2.3464 7.0149 0.3370 42 1 -3.1868 10.3907 -0.8728 43 1 -0.9549 5.5485 4.9906 44 1 0.4534 6.2653 4.1429 45 1 1.6699 4.8473 5.5875 46 1 0.2984 3.7048 5.7707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589823067.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:07 Heat of formation + Delta-G solvation = -71.845546 kcal Electronic energy + Delta-G solvation = -27428.916323 eV Core-core repulsion = 23637.069863 eV Total energy + Delta-G solvation = -3791.846460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.86426 -38.51244 -38.39231 -37.03643 -36.62895 -35.91691 -34.53456 -33.25624 -30.76939 -30.25081 -28.77990 -27.04322 -26.86598 -24.91200 -24.42543 -22.93202 -22.37724 -20.48912 -20.40716 -18.92782 -18.63420 -18.44092 -17.49508 -17.11069 -16.82066 -16.74082 -16.40408 -15.86108 -15.70543 -15.47524 -14.96782 -14.73988 -14.66936 -14.53300 -14.12884 -13.89637 -13.81307 -13.52437 -13.36903 -13.30305 -13.22962 -13.14259 -12.86991 -12.77231 -12.66175 -12.56156 -12.50400 -12.38659 -12.23374 -12.10022 -11.81442 -11.52934 -11.24313 -11.12919 -10.86496 -10.58278 -10.54158 -10.16066 -8.85593 -8.17949 -6.27905 -0.69948 -0.25369 0.23849 1.40241 1.43015 1.50734 1.95223 2.33969 2.41720 2.63369 2.80298 3.15606 3.30738 3.41566 3.58705 3.83183 3.97590 4.08271 4.14328 4.19390 4.22237 4.30550 4.35116 4.41367 4.61641 4.62313 4.72550 4.74182 4.80687 4.82487 4.88120 4.92482 4.97217 4.97882 4.99020 5.11667 5.21664 5.28841 5.39020 5.45809 5.51027 5.56161 5.76145 5.84693 5.87266 6.08487 6.11081 6.27013 6.87774 7.40652 8.94058 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.002854 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.583111 B = 9809.781274 C =10909.027935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -1.105 6.105 3 S 2.716 3.284 4 O -0.993 6.993 5 O -0.980 6.980 6 C -0.655 4.655 7 C -0.050 4.050 8 C -0.098 4.098 9 C -0.091 4.091 10 C 0.060 3.940 11 C -0.063 4.063 12 N -0.472 5.472 13 C 0.063 3.937 14 C -0.070 4.070 15 H 0.064 0.936 16 C -0.115 4.115 17 C 0.032 3.968 18 C -0.529 4.529 19 H 0.065 0.935 20 C -0.003 4.003 21 N -0.936 5.936 22 Si 0.962 3.038 23 H -0.266 1.266 24 H -0.287 1.287 25 H -0.266 1.266 26 C 0.037 3.963 27 C -0.079 4.079 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.431 0.569 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.125 0.875 35 H 0.030 0.970 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.036 0.964 40 H -0.016 1.016 41 H -0.012 1.012 42 H 0.262 0.738 43 H 0.107 0.893 44 H 0.055 0.945 45 H 0.110 0.890 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.494 -22.507 10.915 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.869 5.869 3 S 2.805 3.195 4 O -0.983 6.983 5 O -0.970 6.970 6 C -0.743 4.743 7 C -0.070 4.070 8 C -0.117 4.117 9 C -0.094 4.094 10 C -0.040 4.040 11 C -0.085 4.085 12 N -0.185 5.185 13 C -0.063 4.063 14 C -0.088 4.088 15 H 0.082 0.918 16 C -0.172 4.172 17 C -0.005 4.005 18 C -0.567 4.567 19 H 0.083 0.917 20 C -0.200 4.200 21 N -0.577 5.577 22 Si 0.787 3.213 23 H -0.191 1.191 24 H -0.212 1.212 25 H -0.191 1.191 26 C -0.089 4.089 27 C -0.116 4.116 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.133 0.867 31 H 0.269 0.731 32 H 0.181 0.819 33 H 0.184 0.816 34 H 0.143 0.857 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.003 0.997 41 H 0.007 0.993 42 H 0.070 0.930 43 H 0.126 0.874 44 H 0.074 0.926 45 H 0.128 0.872 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.350 -22.125 10.182 26.463 hybrid contribution -0.352 1.237 -0.098 1.289 sum 9.999 -20.888 10.084 25.258 Atomic orbital electron populations 1.21727 0.77329 1.06205 1.02046 1.54936 1.16710 1.23554 1.91668 1.01047 0.72222 0.72880 0.73364 1.93570 1.79172 1.69872 1.55689 1.93547 1.32095 1.83859 1.87475 1.30544 1.06471 1.15161 1.22108 1.21093 0.97299 0.97769 0.90856 1.20877 0.96353 0.95465 0.98958 1.21247 0.94236 0.98150 0.95760 1.20084 0.91131 0.97844 0.94913 1.20201 0.96110 0.95830 0.96370 1.60623 1.36034 1.16396 1.05471 1.22342 0.97761 0.93033 0.93194 1.21017 0.93923 0.94836 0.99072 0.91754 1.21511 0.96836 0.98227 1.00658 1.19000 0.95017 0.92991 0.93539 1.21574 1.17123 1.12128 1.05845 0.91690 1.25980 0.99464 0.99630 0.94936 1.70110 1.42918 1.31970 1.12684 0.85539 0.79491 0.78280 0.77982 1.19072 1.21247 1.19105 1.23442 0.99988 0.96142 0.89300 1.21500 0.99158 0.95760 0.95189 0.91951 0.92159 0.86663 0.73143 0.81901 0.81582 0.85673 0.95141 0.91423 0.91628 0.93678 0.94522 0.99727 0.99336 0.92952 0.87443 0.92624 0.87209 0.86967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 11.14 127.77 1.42 2.34 16 2 N -1.11 -15.49 6.19 -206.54 -1.28 -16.77 16 3 S 2.72 60.99 5.73 -56.49 -0.32 60.67 16 4 O -0.99 -30.80 16.99 -128.00 -2.17 -32.97 16 5 O -0.98 -24.93 17.27 -128.00 -2.21 -27.14 16 6 C -0.65 -15.09 5.94 22.21 0.13 -14.95 16 7 C -0.05 -0.94 9.53 22.30 0.21 -0.72 16 8 C -0.10 -1.67 10.03 22.21 0.22 -1.45 16 9 C -0.09 -1.92 6.23 -19.49 -0.12 -2.04 16 10 C 0.06 1.63 5.97 38.24 0.23 1.86 16 11 C -0.06 -1.73 8.99 22.47 0.20 -1.53 16 12 N -0.47 -13.67 4.59 -688.35 -3.16 -16.83 16 13 C 0.06 2.25 4.04 86.30 0.35 2.60 16 14 C -0.07 -2.81 2.29 -10.80 -0.02 -2.84 16 15 H 0.06 2.51 7.16 -2.39 -0.02 2.50 16 16 C -0.12 -4.29 8.90 71.98 0.64 -3.65 16 17 C 0.03 1.70 4.45 29.85 0.13 1.83 16 18 C -0.53 -29.67 8.34 25.60 0.21 -29.45 16 19 H 0.06 3.45 7.08 -2.91 -0.02 3.43 16 20 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 21 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 22 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 C 0.04 0.86 5.75 86.66 0.50 1.36 16 27 C -0.08 -1.32 7.04 30.67 0.22 -1.10 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 30 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.43 3.60 8.96 -96.75 -0.87 2.73 16 32 H 0.16 2.24 7.61 -2.91 -0.02 2.21 16 33 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.13 3.68 6.80 -2.91 -0.02 3.66 16 35 H 0.03 1.15 7.96 -2.39 -0.02 1.13 16 36 H 0.07 2.52 7.08 -2.39 -0.02 2.51 16 37 H 0.06 2.09 7.88 -2.39 -0.02 2.07 16 38 H 0.04 1.80 6.83 -2.38 -0.02 1.78 16 39 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 40 H -0.02 -0.91 8.14 -2.39 -0.02 -0.92 16 41 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 42 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.11 2.30 8.05 -2.39 -0.02 2.28 16 44 H 0.06 1.40 7.75 -2.39 -0.02 1.38 16 45 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -77.41 383.62 -1.93 -79.34 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.12 Total: 12.33 kcal Atomic # 6 Polarization: -52.23 SS G_CDS: 4.79 Total: -47.44 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -4.15 Total: -91.12 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -4.39 Total: -60.11 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 60.99 SS G_CDS: -0.32 Total: 60.67 kcal Total: -77.41 -1.93 -79.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589823067.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.496 kcal (2) G-P(sol) polarization free energy of solvation -77.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds