Wall clock time and date at job start Tue Mar 31 2020 20:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47055 * 2 1 4 4 C 1.52999 * 109.46471 * 119.99897 * 2 1 3 5 5 N 1.46500 * 109.47528 * 294.99892 * 4 2 1 6 6 C 1.34773 * 120.00431 * 180.02562 * 5 4 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 4 9 9 C 1.47021 * 125.64884 * 359.95972 * 8 6 5 10 10 C 1.54331 * 107.26526 * 178.85291 * 9 8 6 11 11 C 1.55157 * 103.02099 * 338.14342 * 10 9 8 12 12 O 1.42904 * 111.00388 * 277.23310 * 11 10 9 13 13 C 1.50703 * 111.03553 * 153.39629 * 11 10 9 14 14 H 1.08003 * 120.00121 * 6.33012 * 13 11 10 15 15 C 1.37879 * 119.99845 * 186.32659 * 13 11 10 16 16 N 1.31515 * 119.99943 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00046 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46925 * 90.00442 * 17 15 13 19 19 H 1.48500 * 109.47519 * 210.00594 * 17 15 13 20 20 H 1.48504 * 109.47111 * 330.00671 * 17 15 13 21 21 C 1.47423 * 125.64535 * 180.27500 * 8 6 5 22 22 C 1.52999 * 109.47157 * 239.99806 * 2 1 3 23 23 C 1.50695 * 109.47304 * 65.00240 * 22 2 1 24 24 C 1.33386 * 125.20271 * 89.99950 * 23 22 2 25 25 C 1.38423 * 114.91943 * 179.97438 * 24 23 22 26 26 C 1.33387 * 114.92475 * 0.02562 * 25 24 23 27 27 S 1.75882 * 109.58942 * 359.75537 * 26 25 24 28 28 H 1.09001 * 109.47123 * 300.00448 * 1 2 3 29 29 H 1.09008 * 109.46926 * 60.00457 * 1 2 3 30 30 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47054 * 175.00187 * 4 2 1 32 32 H 1.08998 * 109.47782 * 55.00649 * 4 2 1 33 33 H 0.97000 * 119.99456 * 0.02562 * 5 4 2 34 34 H 1.09003 * 109.88257 * 298.40212 * 9 8 6 35 35 H 1.09000 * 109.88161 * 59.56145 * 9 8 6 36 36 H 1.09003 * 110.84977 * 219.67319 * 10 9 8 37 37 H 1.08999 * 110.51339 * 96.45584 * 10 9 8 38 38 H 0.96695 * 114.00220 * 173.65427 * 12 11 10 39 39 H 0.96998 * 119.99612 * 179.97438 * 16 15 13 40 40 H 1.09000 * 110.36923 * 322.92470 * 21 8 6 41 41 H 1.09005 * 110.36919 * 85.14325 * 21 8 6 42 42 H 1.09004 * 109.46992 * 185.00492 * 22 2 1 43 43 H 1.08999 * 109.47129 * 304.99747 * 22 2 1 44 44 H 1.07999 * 122.54117 * 359.95371 * 24 23 22 45 45 H 1.08004 * 122.54071 * 180.02562 * 25 24 23 46 46 H 1.08002 * 125.20685 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6523 0.0353 2.4424 6 6 1.9962 -0.4131 3.6660 7 8 2.6277 -1.4459 3.7796 8 7 1.6443 0.2859 4.7633 9 6 0.8893 1.5474 4.7701 10 6 0.6982 1.9589 6.2452 11 6 0.8727 0.6188 7.0074 12 8 -0.3433 -0.1319 7.0087 13 6 1.3594 0.8558 8.4139 14 1 1.4396 1.8631 8.7950 15 6 1.7022 -0.2134 9.2141 16 7 1.6050 -1.4400 8.7498 17 14 2.3062 0.0804 10.9571 18 1 1.1487 0.0863 11.8875 19 1 3.2468 -1.0016 11.3441 20 1 3.0030 1.3900 11.0254 21 6 1.9585 -0.0846 6.1552 22 6 2.0401 -0.7213 -1.2492 23 6 1.6415 0.0569 -2.4766 24 6 2.3694 1.0176 -3.0480 25 6 1.7983 1.5928 -4.1700 26 6 0.6063 1.0997 -4.5095 27 16 0.1483 -0.1671 -3.3786 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1263 -0.7995 1.2057 32 1 1.6054 -1.7198 1.2952 33 1 1.1482 0.8591 2.3517 34 1 1.4485 2.3170 4.2379 35 1 -0.0827 1.4002 4.2993 36 1 -0.2990 2.3680 6.4078 37 1 1.4634 2.6752 6.5442 38 1 -0.2584 -1.0174 7.3877 39 1 1.8466 -2.1922 9.3126 40 1 1.8995 -1.1655 6.2827 41 1 2.9502 0.2755 6.4291 42 1 3.1264 -0.7996 -1.2055 43 1 1.6055 -1.7198 -1.2951 44 1 3.3314 1.3236 -2.6641 45 1 2.2812 2.3812 -4.7284 46 1 0.0150 1.4252 -5.3527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591967239.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:13 Heat of formation + Delta-G solvation = -55.040148 kcal Electronic energy + Delta-G solvation = -26807.707135 eV Core-core repulsion = 23016.589411 eV Total energy + Delta-G solvation = -3791.117724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.70442 -38.54835 -37.51536 -36.36939 -34.19439 -33.30917 -32.20658 -30.46193 -29.77181 -27.79900 -27.00198 -26.19940 -24.70778 -23.34274 -22.39247 -20.73710 -19.64661 -19.50477 -19.24084 -17.58456 -17.40914 -16.99875 -15.89122 -15.65894 -15.51389 -14.98469 -14.88459 -14.62903 -14.20985 -14.04236 -13.68477 -13.20268 -13.15331 -12.99462 -12.79376 -12.76576 -12.71404 -12.43769 -12.03444 -11.97518 -11.64255 -11.44814 -11.41423 -11.10942 -11.02818 -10.97530 -10.92923 -10.79612 -10.58316 -10.45228 -10.17344 -9.59427 -9.34189 -8.92633 -8.78224 -8.72061 -8.67301 -8.33017 -7.65191 -6.25185 -4.35009 0.70000 1.34215 1.71904 2.44853 3.16683 3.23764 3.30122 3.32354 3.79410 4.27197 4.33624 4.50098 4.60139 4.76205 4.80256 4.89482 5.01829 5.09877 5.26135 5.31364 5.39172 5.42917 5.52439 5.64290 5.66317 5.72826 5.78896 5.79715 5.85281 5.99185 6.01511 6.03534 6.10544 6.15332 6.22354 6.53162 6.72609 6.80930 6.91253 7.00246 7.26376 7.35536 7.68430 7.76847 8.06043 8.57428 8.69574 9.17773 9.32478 9.40661 10.81804 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032449 B = 0.001976 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.693227 B =14165.615555 C =14342.352619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 H 0.080 0.920 4 C 0.146 3.854 5 N -0.751 5.751 6 C 0.716 3.284 7 O -0.598 6.598 8 N -0.629 5.629 9 C 0.106 3.894 10 C -0.116 4.116 11 C 0.248 3.752 12 O -0.583 6.583 13 C -0.538 4.538 14 H 0.066 0.934 15 C 0.071 3.929 16 N -0.891 5.891 17 Si 0.903 3.097 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.114 3.886 22 C -0.044 4.044 23 C -0.162 4.162 24 C -0.144 4.144 25 C -0.132 4.132 26 C -0.222 4.222 27 S 0.099 5.901 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.392 0.608 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.381 0.619 39 H 0.270 0.730 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 5.462 -24.105 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.116 4.116 3 H 0.098 0.902 4 C 0.021 3.979 5 N -0.408 5.408 6 C 0.418 3.582 7 O -0.477 6.477 8 N -0.365 5.365 9 C -0.018 4.018 10 C -0.154 4.154 11 C 0.207 3.793 12 O -0.391 6.391 13 C -0.576 4.576 14 H 0.084 0.916 15 C -0.133 4.133 16 N -0.530 5.530 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.008 4.008 22 C -0.084 4.084 23 C -0.280 4.280 24 C -0.174 4.174 25 C -0.163 4.163 26 C -0.358 4.358 27 S 0.362 5.638 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.226 0.774 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.231 0.769 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.427 4.046 -24.186 24.642 hybrid contribution 1.527 1.011 0.842 2.016 sum -0.900 5.057 -23.343 23.902 Atomic orbital electron populations 1.21981 0.94431 1.02552 1.02215 1.21370 0.96871 1.00332 0.93060 0.90178 1.21106 0.99660 0.94951 0.82175 1.45095 1.62283 1.28844 1.04571 1.15517 0.80044 0.83046 0.79640 1.90885 1.46302 1.24997 1.85488 1.47931 1.57422 1.24503 1.06693 1.21917 0.94805 0.85757 0.99317 1.22588 1.01860 0.98933 0.91997 1.19637 0.81456 0.86111 0.92055 1.86098 1.35076 1.32440 1.85530 1.21450 1.45169 0.93666 0.97310 0.91563 1.25087 0.94146 0.95037 0.99017 1.69724 1.47837 0.98272 1.37147 0.86409 0.78660 0.78070 0.83780 1.20431 1.21029 1.19726 1.23116 0.99426 1.02443 0.75798 1.20165 1.01908 0.97695 0.88630 1.24478 0.98209 1.03158 1.02134 1.20153 1.01980 0.98078 0.97212 1.20172 0.95563 1.02240 0.98292 1.25632 1.01475 1.03457 1.05227 1.84391 1.20738 1.37008 1.21665 0.92163 0.92079 0.92252 0.91823 0.91736 0.77374 0.93214 0.92752 0.90809 0.90459 0.76928 0.92012 0.89681 0.92544 0.89396 0.90194 0.84294 0.84472 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.80 37.16 0.33 -1.07 16 2 C -0.10 -0.87 2.41 -90.62 -0.22 -1.09 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 4 C 0.15 1.80 5.06 -4.04 -0.02 1.78 16 5 N -0.75 -11.21 5.24 -65.22 -0.34 -11.55 16 6 C 0.72 14.67 8.49 -86.92 -0.74 13.93 16 7 O -0.60 -14.65 16.60 5.28 0.09 -14.56 16 8 N -0.63 -13.12 3.33 -176.23 -0.59 -13.71 16 9 C 0.11 1.84 6.15 -3.06 -0.02 1.82 16 10 C -0.12 -2.28 6.13 -24.89 -0.15 -2.43 16 11 C 0.25 6.00 0.87 -89.62 -0.08 5.92 16 12 O -0.58 -14.87 13.16 -35.23 -0.46 -15.34 16 13 C -0.54 -13.97 8.27 -34.44 -0.28 -14.26 16 14 H 0.07 1.68 7.79 -52.48 -0.41 1.28 16 15 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 16 N -0.89 -23.94 10.69 55.43 0.59 -23.35 16 17 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 C 0.11 2.78 5.38 -2.53 -0.01 2.77 16 22 C -0.04 -0.35 5.18 -27.89 -0.14 -0.50 16 23 C -0.16 -1.35 5.07 -36.01 -0.18 -1.53 16 24 C -0.14 -1.15 10.05 -41.21 -0.41 -1.56 16 25 C -0.13 -0.98 10.18 -41.21 -0.42 -1.40 16 26 C -0.22 -1.62 11.23 29.04 0.33 -1.30 16 27 S 0.10 0.78 21.91 -107.50 -2.36 -1.57 16 28 H 0.06 0.57 7.18 -51.93 -0.37 0.20 16 29 H 0.06 0.52 6.19 -51.92 -0.32 0.20 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.39 4.96 6.64 -40.82 -0.27 4.69 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 38 H 0.38 10.01 7.56 45.56 0.34 10.36 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.08 2.35 7.33 -51.93 -0.38 1.97 16 41 H 0.06 1.42 8.03 -51.93 -0.42 1.01 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 46 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -30.77 384.88 -10.87 -41.64 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -6.45 Total: 14.41 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.13 Total: 2.84 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.34 Total: -48.60 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.38 Total: -29.90 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.36 Total: -1.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.77 -10.87 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967239.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.399 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds