Wall clock time and date at job start Tue Mar 31 2020 20:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47055 * 2 1 4 4 C 1.52999 * 109.46471 * 119.99897 * 2 1 3 5 5 N 1.46500 * 109.47528 * 294.99892 * 4 2 1 6 6 C 1.34773 * 120.00431 * 180.02562 * 5 4 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 4 9 9 C 1.47021 * 125.64884 * 359.95972 * 8 6 5 10 10 C 1.54331 * 107.26526 * 178.85291 * 9 8 6 11 11 C 1.55157 * 103.02099 * 338.14342 * 10 9 8 12 12 O 1.42904 * 111.00388 * 277.23310 * 11 10 9 13 13 C 1.50703 * 111.03553 * 153.39629 * 11 10 9 14 14 H 1.08003 * 120.00121 * 6.33012 * 13 11 10 15 15 C 1.37879 * 119.99845 * 186.32659 * 13 11 10 16 16 N 1.31515 * 119.99943 * 0.02562 * 15 13 11 17 17 Si 1.86793 * 120.00046 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46925 * 90.00442 * 17 15 13 19 19 H 1.48500 * 109.47519 * 210.00594 * 17 15 13 20 20 H 1.48504 * 109.47111 * 330.00671 * 17 15 13 21 21 C 1.47423 * 125.64535 * 180.27500 * 8 6 5 22 22 C 1.52999 * 109.47157 * 239.99806 * 2 1 3 23 23 C 1.50695 * 109.47304 * 65.00240 * 22 2 1 24 24 C 1.33386 * 125.20271 * 89.99950 * 23 22 2 25 25 C 1.38423 * 114.91943 * 179.97438 * 24 23 22 26 26 C 1.33387 * 114.92475 * 0.02562 * 25 24 23 27 27 S 1.75882 * 109.58942 * 359.75537 * 26 25 24 28 28 H 1.09001 * 109.47123 * 300.00448 * 1 2 3 29 29 H 1.09008 * 109.46926 * 60.00457 * 1 2 3 30 30 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47054 * 175.00187 * 4 2 1 32 32 H 1.08998 * 109.47782 * 55.00649 * 4 2 1 33 33 H 0.97000 * 119.99456 * 0.02562 * 5 4 2 34 34 H 1.09003 * 109.88257 * 298.40212 * 9 8 6 35 35 H 1.09000 * 109.88161 * 59.56145 * 9 8 6 36 36 H 1.09003 * 110.84977 * 219.67319 * 10 9 8 37 37 H 1.08999 * 110.51339 * 96.45584 * 10 9 8 38 38 H 0.96695 * 114.00220 * 173.65427 * 12 11 10 39 39 H 0.96998 * 119.99612 * 179.97438 * 16 15 13 40 40 H 1.09000 * 110.36923 * 322.92470 * 21 8 6 41 41 H 1.09005 * 110.36919 * 85.14325 * 21 8 6 42 42 H 1.09004 * 109.46992 * 185.00492 * 22 2 1 43 43 H 1.08999 * 109.47129 * 304.99747 * 22 2 1 44 44 H 1.07999 * 122.54117 * 359.95371 * 24 23 22 45 45 H 1.08004 * 122.54071 * 180.02562 * 25 24 23 46 46 H 1.08002 * 125.20685 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6523 0.0353 2.4424 6 6 1.9962 -0.4131 3.6660 7 8 2.6277 -1.4459 3.7796 8 7 1.6443 0.2859 4.7633 9 6 0.8893 1.5474 4.7701 10 6 0.6982 1.9589 6.2452 11 6 0.8727 0.6188 7.0074 12 8 -0.3433 -0.1319 7.0087 13 6 1.3594 0.8558 8.4139 14 1 1.4396 1.8631 8.7950 15 6 1.7022 -0.2134 9.2141 16 7 1.6050 -1.4400 8.7498 17 14 2.3062 0.0804 10.9571 18 1 1.1487 0.0863 11.8875 19 1 3.2468 -1.0016 11.3441 20 1 3.0030 1.3900 11.0254 21 6 1.9585 -0.0846 6.1552 22 6 2.0401 -0.7213 -1.2492 23 6 1.6415 0.0569 -2.4766 24 6 2.3694 1.0176 -3.0480 25 6 1.7983 1.5928 -4.1700 26 6 0.6063 1.0997 -4.5095 27 16 0.1483 -0.1671 -3.3786 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1263 -0.7995 1.2057 32 1 1.6054 -1.7198 1.2952 33 1 1.1482 0.8591 2.3517 34 1 1.4485 2.3170 4.2379 35 1 -0.0827 1.4002 4.2993 36 1 -0.2990 2.3680 6.4078 37 1 1.4634 2.6752 6.5442 38 1 -0.2584 -1.0174 7.3877 39 1 1.8466 -2.1922 9.3126 40 1 1.8995 -1.1655 6.2827 41 1 2.9502 0.2755 6.4291 42 1 3.1264 -0.7996 -1.2055 43 1 1.6055 -1.7198 -1.2951 44 1 3.3314 1.3236 -2.6641 45 1 2.2812 2.3812 -4.7284 46 1 0.0150 1.4252 -5.3527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591967239.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:12 Heat of formation + Delta-G solvation = -74.986667 kcal Electronic energy + Delta-G solvation = -26808.572081 eV Core-core repulsion = 23016.589411 eV Total energy + Delta-G solvation = -3791.982670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26241 -39.43070 -38.91143 -37.40363 -36.02026 -34.50546 -34.22002 -31.83347 -30.80092 -29.52888 -27.91463 -27.30303 -26.25288 -24.31305 -23.67841 -21.63593 -21.41838 -20.88130 -19.89965 -19.22671 -18.78162 -18.11155 -17.24436 -16.95804 -16.80399 -16.32654 -16.24876 -16.01506 -15.48714 -15.18269 -14.92319 -14.73343 -14.59163 -14.03853 -13.88297 -13.73932 -13.58145 -13.49578 -13.30616 -13.27287 -13.13550 -12.83309 -12.69037 -12.51576 -12.31707 -12.22715 -12.17026 -12.07601 -11.85618 -11.73340 -11.54741 -11.31722 -11.17491 -10.65327 -10.31480 -10.16526 -9.50612 -9.30756 -9.30158 -8.23141 -6.40447 0.12924 0.77513 1.16089 1.42642 1.44710 1.54477 1.70796 1.91306 2.17985 2.39326 3.02790 3.11999 3.61043 3.81244 3.86924 4.03069 4.09191 4.17396 4.22088 4.30568 4.35784 4.43979 4.52753 4.63272 4.72110 4.75377 4.76815 4.78740 4.87226 4.95742 5.02786 5.08549 5.11836 5.20113 5.28769 5.32254 5.36491 5.40088 5.45710 5.48069 5.54759 5.66212 5.77400 6.06869 6.20916 6.67113 7.08984 7.28798 7.36219 7.59973 8.81959 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032449 B = 0.001976 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.693227 B =14165.615555 C =14342.352619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 H 0.090 0.910 4 C 0.144 3.856 5 N -0.727 5.727 6 C 0.709 3.291 7 O -0.646 6.646 8 N -0.635 5.635 9 C 0.107 3.893 10 C -0.111 4.111 11 C 0.231 3.769 12 O -0.587 6.587 13 C -0.555 4.555 14 H 0.070 0.930 15 C 0.024 3.976 16 N -0.916 5.916 17 Si 0.964 3.036 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.264 1.264 21 C 0.129 3.871 22 C -0.041 4.041 23 C -0.174 4.174 24 C -0.148 4.148 25 C -0.141 4.141 26 C -0.223 4.223 27 S 0.081 5.919 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.408 0.592 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.372 0.628 39 H 0.268 0.732 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.150 0.850 45 H 0.156 0.844 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.667 7.779 -25.609 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 H 0.108 0.892 4 C 0.020 3.980 5 N -0.385 5.385 6 C 0.411 3.589 7 O -0.529 6.529 8 N -0.371 5.371 9 C -0.015 4.015 10 C -0.148 4.148 11 C 0.191 3.809 12 O -0.395 6.395 13 C -0.593 4.593 14 H 0.088 0.912 15 C -0.177 4.177 16 N -0.555 5.555 17 Si 0.790 3.210 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.188 1.188 21 C 0.005 3.995 22 C -0.081 4.081 23 C -0.291 4.291 24 C -0.178 4.178 25 C -0.172 4.172 26 C -0.358 4.358 27 S 0.344 5.656 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.244 0.756 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.221 0.779 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.168 0.832 45 H 0.173 0.827 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.656 6.425 -25.742 26.664 hybrid contribution 1.583 0.288 1.237 2.029 sum -1.074 6.714 -24.505 25.431 Atomic orbital electron populations 1.21974 0.94335 1.02330 1.02426 1.21238 0.96740 1.00406 0.91634 0.89153 1.21272 0.99569 0.94697 0.82428 1.44928 1.61103 1.29154 1.03271 1.15763 0.79821 0.82517 0.80841 1.90847 1.48476 1.27187 1.86375 1.47871 1.57920 1.25822 1.05487 1.22114 0.95957 0.84960 0.98451 1.22594 1.03043 0.96548 0.92640 1.19881 0.80881 0.88098 0.92049 1.86090 1.35962 1.32028 1.85412 1.21799 1.45189 0.93835 0.98470 0.91219 1.25855 0.94361 0.94862 1.02608 1.69855 1.48528 0.98886 1.38205 0.85455 0.78088 0.78030 0.79452 1.20065 1.21276 1.18837 1.22633 0.98783 0.99671 0.78380 1.20117 1.02395 0.97527 0.88065 1.24487 0.98484 1.03685 1.02452 1.20404 1.02365 0.97755 0.97280 1.20434 0.95684 1.02715 0.98326 1.25925 1.01695 1.02786 1.05420 1.84450 1.21021 1.37759 1.22355 0.92412 0.91335 0.92775 0.92147 0.92981 0.75575 0.89173 0.90952 0.89611 0.89274 0.77935 0.92239 0.93933 0.94342 0.88602 0.90255 0.83226 0.82681 0.80328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.80 71.98 0.63 -1.88 16 2 C -0.08 -1.30 2.41 -10.79 -0.03 -1.33 16 3 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 4 C 0.14 3.43 5.06 86.38 0.44 3.86 16 5 N -0.73 -20.66 5.24 -478.53 -2.51 -23.17 16 6 C 0.71 28.97 8.49 179.06 1.52 30.49 16 7 O -0.65 -32.58 16.60 -4.01 -0.07 -32.64 16 8 N -0.63 -26.19 3.33 -829.73 -2.76 -28.95 16 9 C 0.11 3.43 6.15 86.73 0.53 3.96 16 10 C -0.11 -4.12 6.13 31.79 0.19 -3.92 16 11 C 0.23 11.21 0.87 -10.15 -0.01 11.20 16 12 O -0.59 -30.35 13.16 -148.98 -1.96 -32.31 16 13 C -0.55 -28.89 8.27 25.60 0.21 -28.68 16 14 H 0.07 3.49 7.79 -2.91 -0.02 3.47 16 15 C 0.02 1.27 5.29 84.65 0.45 1.71 16 16 N -0.92 -50.68 10.69 21.45 0.23 -50.45 16 17 Si 0.96 42.03 29.54 68.60 2.03 44.05 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 C 0.13 6.46 5.38 86.86 0.47 6.92 16 22 C -0.04 -0.59 5.18 29.85 0.15 -0.44 16 23 C -0.17 -2.57 5.07 24.59 0.12 -2.45 16 24 C -0.15 -2.03 10.05 21.22 0.21 -1.82 16 25 C -0.14 -1.76 10.18 21.22 0.22 -1.54 16 26 C -0.22 -2.79 11.23 66.72 0.75 -2.04 16 27 S 0.08 1.17 21.91 -56.49 -1.24 -0.06 16 28 H 0.06 0.97 7.18 -2.39 -0.02 0.95 16 29 H 0.07 1.04 6.19 -2.38 -0.01 1.03 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.41 9.16 6.64 -92.71 -0.62 8.54 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.20 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.09 3.08 8.03 -2.39 -0.02 3.07 16 38 H 0.37 20.29 7.56 -74.06 -0.56 19.73 16 39 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.04 2.46 7.33 -2.39 -0.02 2.45 16 41 H 0.04 2.01 8.03 -2.38 -0.02 1.99 16 42 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 45 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 46 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -68.35 384.88 -0.59 -68.94 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.18 Total: 40.51 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 5.87 Total: 14.07 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -5.04 Total: -102.56 kcal Atomic # 8 Polarization: -62.92 SS G_CDS: -2.03 Total: -64.95 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -1.24 Total: -0.06 kcal Total: -68.35 -0.59 -68.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967239.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.044 kcal (2) G-P(sol) polarization free energy of solvation -68.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds