Wall clock time and date at job start Tue Mar 31 2020 20:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 N 1.46497 * 109.47195 * 64.99866 * 4 2 1 6 6 C 1.34777 * 120.00267 * 179.97438 * 5 4 2 7 7 O 1.21589 * 119.99760 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00215 * 180.02562 * 6 5 4 9 9 C 1.47023 * 125.64663 * 359.70050 * 8 6 5 10 10 C 1.54337 * 107.26664 * 178.84862 * 9 8 6 11 11 C 1.55165 * 103.01767 * 338.13819 * 10 9 8 12 12 O 1.42903 * 111.00414 * 277.23299 * 11 10 9 13 13 C 1.50706 * 111.03438 * 153.39655 * 11 10 9 14 14 H 1.07997 * 119.99987 * 6.33073 * 13 11 10 15 15 C 1.37879 * 119.99746 * 186.33014 * 13 11 10 16 16 N 1.31519 * 119.99835 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 119.99816 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47348 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47117 * 120.00274 * 17 15 13 20 20 H 1.48501 * 109.47170 * 239.99931 * 17 15 13 21 21 C 1.47426 * 125.65170 * 180.02562 * 8 6 5 22 22 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 23 23 C 1.50703 * 109.46970 * 294.99898 * 22 2 1 24 24 C 1.33386 * 125.20585 * 89.99375 * 23 22 2 25 25 C 1.38423 * 114.92076 * 179.97438 * 24 23 22 26 26 C 1.33386 * 114.92382 * 0.02562 * 25 24 23 27 27 S 1.75885 * 109.59200 * 359.75776 * 26 25 24 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47630 * 185.00216 * 4 2 1 32 32 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 33 33 H 0.96999 * 120.00041 * 0.02562 * 5 4 2 34 34 H 1.08996 * 109.88488 * 298.38699 * 9 8 6 35 35 H 1.08997 * 109.88575 * 59.56176 * 9 8 6 36 36 H 1.08996 * 110.84995 * 219.67671 * 10 9 8 37 37 H 1.08996 * 110.51721 * 96.44893 * 10 9 8 38 38 H 0.96700 * 113.99809 * 173.65166 * 12 11 10 39 39 H 0.96996 * 119.99616 * 179.97438 * 16 15 13 40 40 H 1.08996 * 110.36655 * 322.93573 * 21 8 6 41 41 H 1.09001 * 110.36247 * 85.14396 * 21 8 6 42 42 H 1.09000 * 109.47059 * 54.99596 * 22 2 1 43 43 H 1.08996 * 109.47073 * 174.99688 * 22 2 1 44 44 H 1.07996 * 122.53931 * 359.96446 * 24 23 22 45 45 H 1.08004 * 122.53336 * 180.02562 * 25 24 23 46 46 H 1.08001 * 125.20578 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 1.9964 -0.4132 -3.6659 7 8 2.6280 -1.4459 -3.7795 8 7 1.6402 0.2831 -4.7635 9 6 0.8741 1.5379 -4.7711 10 6 0.7322 1.9792 -6.2432 11 6 1.9046 1.2425 -6.9435 12 8 3.1272 1.9670 -6.7936 13 6 1.5986 1.0000 -8.3991 14 1 0.7066 1.4192 -8.8405 15 6 2.4577 0.2430 -9.1672 16 7 3.5437 -0.2679 -8.6294 17 14 2.0789 -0.0570 -10.9716 18 1 0.8071 0.6208 -11.3297 19 1 3.1814 0.4853 -11.8056 20 1 1.9468 -1.5162 -11.2137 21 6 1.9485 -0.0909 -6.1559 22 6 2.0400 -0.7213 1.2492 23 6 1.6414 0.0570 2.4766 24 6 0.5066 -0.1093 3.1577 25 6 0.3578 0.7215 4.2548 26 6 1.3714 1.5629 4.4644 27 16 2.6043 1.3191 3.2340 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1263 -0.7996 -1.2056 32 1 1.6053 -1.7198 -1.2952 33 1 1.1488 0.8593 -2.3517 34 1 -0.1111 1.3734 -4.3348 35 1 1.4087 2.3021 -4.2069 36 1 0.8445 3.0593 -6.3370 37 1 -0.2255 1.6532 -6.6490 38 1 3.9046 1.5002 -7.1296 39 1 4.1478 -0.8008 -9.1697 40 1 2.9417 -0.5356 -6.2182 41 1 1.1987 -0.7839 -6.5373 42 1 1.6054 -1.7198 1.2951 43 1 3.1263 -0.7995 1.2055 44 1 -0.2395 -0.8368 2.8745 45 1 -0.5132 0.6908 4.8928 46 1 1.4284 2.2807 5.2693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591967241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:16 Heat of formation + Delta-G solvation = -55.140244 kcal Electronic energy + Delta-G solvation = -26802.120818 eV Core-core repulsion = 23010.998754 eV Total energy + Delta-G solvation = -3791.122064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.71032 -38.61954 -37.50138 -36.31957 -34.19418 -33.30125 -32.20658 -30.43369 -29.72547 -27.79439 -27.25116 -26.10458 -24.65441 -23.32193 -22.39237 -20.63006 -19.66992 -19.54570 -19.34173 -17.56983 -17.33345 -16.99063 -16.08386 -15.55152 -15.48048 -15.01300 -14.84855 -14.62279 -14.23254 -14.00569 -13.66590 -13.28570 -12.99863 -12.94682 -12.90853 -12.79480 -12.72892 -12.41441 -12.03224 -11.98953 -11.64303 -11.43710 -11.39175 -11.10175 -11.07216 -11.02017 -10.87345 -10.79042 -10.57592 -10.44681 -10.16748 -9.59410 -9.34234 -8.91650 -8.78323 -8.75694 -8.67811 -8.32642 -7.65153 -6.25362 -4.35090 0.70532 1.34729 1.72526 2.44832 3.16598 3.22758 3.30269 3.33491 3.79481 4.27154 4.33546 4.49848 4.59769 4.76617 4.80512 4.85711 5.01752 5.17519 5.24410 5.30209 5.37034 5.42955 5.51530 5.64209 5.66243 5.69736 5.78789 5.81667 5.85365 5.98676 6.01823 6.03774 6.08970 6.15864 6.21231 6.53252 6.72660 6.80970 6.91266 7.00246 7.26368 7.35643 7.68452 7.76876 8.06029 8.57493 8.69825 9.17817 9.32478 9.40623 10.81661 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030748 B = 0.001987 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.404807 B =14091.516140 C =14219.806543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.078 0.922 4 C 0.146 3.854 5 N -0.751 5.751 6 C 0.716 3.284 7 O -0.598 6.598 8 N -0.629 5.629 9 C 0.106 3.894 10 C -0.116 4.116 11 C 0.248 3.752 12 O -0.583 6.583 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.891 5.891 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.114 3.886 22 C -0.044 4.044 23 C -0.162 4.162 24 C -0.142 4.142 25 C -0.133 4.133 26 C -0.220 4.220 27 S 0.096 5.904 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.392 0.608 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.381 0.619 39 H 0.269 0.731 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 2.619 23.852 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.097 0.903 4 C 0.021 3.979 5 N -0.408 5.408 6 C 0.418 3.582 7 O -0.477 6.477 8 N -0.366 5.366 9 C -0.018 4.018 10 C -0.154 4.154 11 C 0.207 3.793 12 O -0.391 6.391 13 C -0.575 4.575 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.530 5.530 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.008 4.008 22 C -0.084 4.084 23 C -0.280 4.280 24 C -0.172 4.172 25 C -0.164 4.164 26 C -0.356 4.356 27 S 0.359 5.641 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.226 0.774 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.231 0.769 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.548 2.792 23.766 24.358 hybrid contribution -1.444 -0.806 -0.712 1.800 sum -5.992 1.986 23.054 23.902 Atomic orbital electron populations 1.21904 0.94363 1.02326 1.02052 1.21367 0.96953 1.00296 0.93082 0.90317 1.21106 0.99756 0.94853 0.82183 1.45096 1.62345 1.28785 1.04571 1.15516 0.79980 0.83111 0.79636 1.90884 1.46118 1.25162 1.85506 1.47932 1.57249 1.24706 1.06663 1.21917 0.94093 0.86351 0.99437 1.22589 0.99729 1.00842 0.92216 1.19647 0.81921 0.85510 0.92213 1.86100 1.18503 1.48910 1.85618 1.21490 1.08931 1.32996 0.94113 0.91504 1.25091 0.94671 0.94296 0.99254 1.69735 1.12246 1.34272 1.36726 0.86355 0.78489 0.77993 0.84090 1.19610 1.20786 1.20802 1.23118 1.01757 1.00039 0.75869 1.20155 1.01672 0.97881 0.88675 1.24485 0.98718 1.02566 1.02211 1.20139 0.98168 1.02476 0.96455 1.20177 1.00012 0.97076 0.99098 1.25604 0.98765 1.06504 1.04686 1.84434 1.22277 1.34793 1.22561 0.92448 0.92337 0.92075 0.91827 0.91736 0.77375 0.93223 0.92742 0.90806 0.90459 0.76924 0.92069 0.89681 0.92550 0.89403 0.90201 0.84312 0.84481 0.82115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.76 37.16 0.33 -0.93 16 2 C -0.10 -0.88 2.41 -90.62 -0.22 -1.09 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.15 1.81 5.06 -4.04 -0.02 1.79 16 5 N -0.75 -11.24 5.24 -65.23 -0.34 -11.58 16 6 C 0.72 14.70 8.49 -86.92 -0.74 13.96 16 7 O -0.60 -14.67 16.60 5.29 0.09 -14.58 16 8 N -0.63 -13.14 3.33 -176.22 -0.59 -13.73 16 9 C 0.11 1.84 6.15 -3.06 -0.02 1.82 16 10 C -0.12 -2.28 6.13 -24.89 -0.15 -2.43 16 11 C 0.25 5.99 0.87 -89.61 -0.08 5.92 16 12 O -0.58 -14.88 13.16 -35.23 -0.46 -15.35 16 13 C -0.54 -13.96 8.27 -34.44 -0.28 -14.25 16 14 H 0.07 1.70 7.79 -52.49 -0.41 1.30 16 15 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 16 N -0.89 -23.95 10.69 55.43 0.59 -23.36 16 17 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.11 2.78 5.38 -2.52 -0.01 2.77 16 22 C -0.04 -0.35 5.18 -27.88 -0.14 -0.49 16 23 C -0.16 -1.34 5.27 -36.00 -0.19 -1.53 16 24 C -0.14 -1.10 8.60 -41.21 -0.35 -1.45 16 25 C -0.13 -0.97 10.18 -41.21 -0.42 -1.39 16 26 C -0.22 -1.61 11.23 29.04 0.33 -1.28 16 27 S 0.10 0.79 23.33 -107.50 -2.51 -1.72 16 28 H 0.06 0.51 7.18 -51.93 -0.37 0.13 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.48 6.40 -51.93 -0.33 0.15 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.39 4.99 6.64 -40.82 -0.27 4.71 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 38 H 0.38 10.02 7.56 45.56 0.34 10.37 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.08 2.35 7.33 -51.93 -0.38 1.97 16 41 H 0.06 1.42 8.03 -51.93 -0.42 1.01 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 46 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -30.78 385.20 -10.97 -41.76 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -6.46 Total: 14.21 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -2.08 Total: 3.15 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.34 Total: -48.66 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.38 Total: -29.93 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.78 -10.97 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.383 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds