Wall clock time and date at job start Tue Mar 31 2020 20:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 N 1.46497 * 109.47195 * 64.99866 * 4 2 1 6 6 C 1.34777 * 120.00267 * 179.97438 * 5 4 2 7 7 O 1.21589 * 119.99760 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00215 * 180.02562 * 6 5 4 9 9 C 1.47023 * 125.64663 * 359.70050 * 8 6 5 10 10 C 1.54337 * 107.26664 * 178.84862 * 9 8 6 11 11 C 1.55165 * 103.01767 * 338.13819 * 10 9 8 12 12 O 1.42903 * 111.00414 * 277.23299 * 11 10 9 13 13 C 1.50706 * 111.03438 * 153.39655 * 11 10 9 14 14 H 1.07997 * 119.99987 * 6.33073 * 13 11 10 15 15 C 1.37879 * 119.99746 * 186.33014 * 13 11 10 16 16 N 1.31519 * 119.99835 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 119.99816 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47348 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47117 * 120.00274 * 17 15 13 20 20 H 1.48501 * 109.47170 * 239.99931 * 17 15 13 21 21 C 1.47426 * 125.65170 * 180.02562 * 8 6 5 22 22 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 23 23 C 1.50703 * 109.46970 * 294.99898 * 22 2 1 24 24 C 1.33386 * 125.20585 * 89.99375 * 23 22 2 25 25 C 1.38423 * 114.92076 * 179.97438 * 24 23 22 26 26 C 1.33386 * 114.92382 * 0.02562 * 25 24 23 27 27 S 1.75885 * 109.59200 * 359.75776 * 26 25 24 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47630 * 185.00216 * 4 2 1 32 32 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 33 33 H 0.96999 * 120.00041 * 0.02562 * 5 4 2 34 34 H 1.08996 * 109.88488 * 298.38699 * 9 8 6 35 35 H 1.08997 * 109.88575 * 59.56176 * 9 8 6 36 36 H 1.08996 * 110.84995 * 219.67671 * 10 9 8 37 37 H 1.08996 * 110.51721 * 96.44893 * 10 9 8 38 38 H 0.96700 * 113.99809 * 173.65166 * 12 11 10 39 39 H 0.96996 * 119.99616 * 179.97438 * 16 15 13 40 40 H 1.08996 * 110.36655 * 322.93573 * 21 8 6 41 41 H 1.09001 * 110.36247 * 85.14396 * 21 8 6 42 42 H 1.09000 * 109.47059 * 54.99596 * 22 2 1 43 43 H 1.08996 * 109.47073 * 174.99688 * 22 2 1 44 44 H 1.07996 * 122.53931 * 359.96446 * 24 23 22 45 45 H 1.08004 * 122.53336 * 180.02562 * 25 24 23 46 46 H 1.08001 * 125.20578 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 1.9964 -0.4132 -3.6659 7 8 2.6280 -1.4459 -3.7795 8 7 1.6402 0.2831 -4.7635 9 6 0.8741 1.5379 -4.7711 10 6 0.7322 1.9792 -6.2432 11 6 1.9046 1.2425 -6.9435 12 8 3.1272 1.9670 -6.7936 13 6 1.5986 1.0000 -8.3991 14 1 0.7066 1.4192 -8.8405 15 6 2.4577 0.2430 -9.1672 16 7 3.5437 -0.2679 -8.6294 17 14 2.0789 -0.0570 -10.9716 18 1 0.8071 0.6208 -11.3297 19 1 3.1814 0.4853 -11.8056 20 1 1.9468 -1.5162 -11.2137 21 6 1.9485 -0.0909 -6.1559 22 6 2.0400 -0.7213 1.2492 23 6 1.6414 0.0570 2.4766 24 6 0.5066 -0.1093 3.1577 25 6 0.3578 0.7215 4.2548 26 6 1.3714 1.5629 4.4644 27 16 2.6043 1.3191 3.2340 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.1263 -0.7996 -1.2056 32 1 1.6053 -1.7198 -1.2952 33 1 1.1488 0.8593 -2.3517 34 1 -0.1111 1.3734 -4.3348 35 1 1.4087 2.3021 -4.2069 36 1 0.8445 3.0593 -6.3370 37 1 -0.2255 1.6532 -6.6490 38 1 3.9046 1.5002 -7.1296 39 1 4.1478 -0.8008 -9.1697 40 1 2.9417 -0.5356 -6.2182 41 1 1.1987 -0.7839 -6.5373 42 1 1.6054 -1.7198 1.2951 43 1 3.1263 -0.7995 1.2055 44 1 -0.2395 -0.8368 2.8745 45 1 -0.5132 0.6908 4.8928 46 1 1.4284 2.2807 5.2693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591967241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:15 Heat of formation + Delta-G solvation = -75.119954 kcal Electronic energy + Delta-G solvation = -26802.987203 eV Core-core repulsion = 23010.998754 eV Total energy + Delta-G solvation = -3791.988449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26739 -39.47333 -38.94469 -37.34233 -36.02353 -34.49073 -34.22208 -31.83510 -30.73331 -29.52353 -28.01976 -27.36639 -26.16807 -24.27891 -23.67292 -21.58200 -21.40024 -20.83813 -20.07053 -19.23772 -18.77316 -18.01698 -17.27644 -16.99252 -16.80506 -16.42850 -16.24988 -15.88093 -15.54626 -15.08010 -14.95730 -14.74247 -14.59907 -13.99573 -13.87876 -13.75108 -13.51479 -13.49198 -13.37773 -13.27818 -13.09274 -12.85854 -12.67797 -12.50457 -12.32651 -12.19328 -12.11505 -12.07291 -11.83340 -11.79969 -11.50980 -11.32230 -11.17847 -10.66402 -10.31493 -10.16813 -9.49448 -9.35848 -9.30517 -8.23474 -6.40703 0.13511 0.77310 1.16484 1.41287 1.44660 1.55585 1.70476 1.91801 2.17588 2.39112 3.02552 3.11598 3.61014 3.80962 3.87793 4.04026 4.08850 4.16709 4.21468 4.30372 4.35385 4.46982 4.55199 4.63169 4.70827 4.76158 4.78071 4.78593 4.88044 4.95747 5.05944 5.08340 5.11758 5.24928 5.28613 5.31988 5.39035 5.40083 5.45334 5.47995 5.55152 5.66512 5.77305 6.06577 6.20467 6.67176 7.08508 7.28547 7.35987 7.59502 8.81853 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030748 B = 0.001987 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.404807 B =14091.516140 C =14219.806543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 H 0.079 0.921 4 C 0.144 3.856 5 N -0.728 5.728 6 C 0.709 3.291 7 O -0.646 6.646 8 N -0.635 5.635 9 C 0.107 3.893 10 C -0.110 4.110 11 C 0.231 3.769 12 O -0.587 6.587 13 C -0.554 4.554 14 H 0.070 0.930 15 C 0.024 3.976 16 N -0.916 5.916 17 Si 0.965 3.035 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.283 1.283 21 C 0.129 3.871 22 C -0.041 4.041 23 C -0.173 4.173 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.220 4.220 27 S 0.068 5.932 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.407 0.593 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.372 0.628 39 H 0.268 0.732 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.371 3.751 25.318 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 H 0.097 0.903 4 C 0.020 3.980 5 N -0.385 5.385 6 C 0.411 3.589 7 O -0.529 6.529 8 N -0.371 5.371 9 C -0.015 4.015 10 C -0.148 4.148 11 C 0.191 3.809 12 O -0.395 6.395 13 C -0.592 4.592 14 H 0.088 0.912 15 C -0.177 4.177 16 N -0.555 5.555 17 Si 0.790 3.210 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.209 1.209 21 C 0.005 3.995 22 C -0.081 4.081 23 C -0.290 4.290 24 C -0.172 4.172 25 C -0.171 4.171 26 C -0.355 4.355 27 S 0.331 5.669 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.244 0.756 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.221 0.779 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.170 0.830 45 H 0.175 0.825 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.758 3.981 25.284 26.472 hybrid contribution -0.772 -1.161 -1.094 1.772 sum -7.530 2.819 24.190 25.491 Atomic orbital electron populations 1.21884 0.93411 1.02652 1.02367 1.21233 0.97538 0.99812 0.91626 0.90281 1.21274 0.99223 0.95014 0.82473 1.44932 1.61165 1.29097 1.03277 1.15763 0.79733 0.82609 0.80836 1.90845 1.48249 1.27394 1.86389 1.47873 1.57839 1.25920 1.05469 1.22113 0.95881 0.85008 0.98478 1.22596 0.98053 1.01114 0.93055 1.19891 0.82723 0.86219 0.92106 1.86092 1.18771 1.49082 1.85539 1.21828 1.09039 1.32990 0.95343 0.91208 1.25859 0.94590 0.94162 1.03102 1.69862 1.12996 1.34723 1.37916 0.85400 0.78511 0.77605 0.79464 1.18634 1.20668 1.20940 1.22637 0.98712 0.99766 0.78352 1.20107 1.01617 0.98209 0.88144 1.24477 0.99075 1.02897 1.02571 1.20382 0.98068 1.02466 0.96290 1.20458 1.00655 0.96749 0.99219 1.25882 0.98141 1.06830 1.04651 1.84534 1.23371 1.35392 1.23622 0.92622 0.92044 0.91211 0.93031 0.92164 0.75592 0.89158 0.90991 0.89618 0.89247 0.77931 0.92241 0.93933 0.94332 0.88484 0.90461 0.83041 0.82527 0.80357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.76 71.98 0.63 -1.44 16 2 C -0.08 -1.34 2.41 -10.79 -0.03 -1.37 16 3 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.14 3.46 5.06 86.38 0.44 3.89 16 5 N -0.73 -20.82 5.24 -478.54 -2.51 -23.33 16 6 C 0.71 29.08 8.49 179.05 1.52 30.60 16 7 O -0.65 -32.66 16.60 -3.99 -0.07 -32.73 16 8 N -0.63 -26.26 3.33 -829.71 -2.76 -29.02 16 9 C 0.11 3.44 6.15 86.73 0.53 3.98 16 10 C -0.11 -4.12 6.13 31.79 0.19 -3.93 16 11 C 0.23 11.21 0.87 -10.14 -0.01 11.20 16 12 O -0.59 -30.39 13.16 -148.98 -1.96 -32.35 16 13 C -0.55 -28.87 8.27 25.60 0.21 -28.66 16 14 H 0.07 3.51 7.79 -2.91 -0.02 3.49 16 15 C 0.02 1.25 5.29 84.65 0.45 1.70 16 16 N -0.92 -50.71 10.69 21.45 0.23 -50.48 16 17 Si 0.96 42.08 29.54 68.60 2.03 44.11 16 18 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 C 0.13 6.47 5.38 86.86 0.47 6.93 16 22 C -0.04 -0.59 5.18 29.85 0.15 -0.44 16 23 C -0.17 -2.56 5.27 24.59 0.13 -2.43 16 24 C -0.14 -1.85 8.60 21.22 0.18 -1.67 16 25 C -0.14 -1.69 10.18 21.22 0.22 -1.47 16 26 C -0.22 -2.77 11.23 66.72 0.75 -2.02 16 27 S 0.07 1.04 23.33 -56.49 -1.32 -0.28 16 28 H 0.05 0.81 7.18 -2.39 -0.02 0.80 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.90 6.40 -2.39 -0.02 0.88 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.41 9.26 6.64 -92.71 -0.62 8.64 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.09 3.10 8.03 -2.39 -0.02 3.08 16 38 H 0.37 20.33 7.56 -74.06 -0.56 19.77 16 39 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.04 2.47 7.33 -2.39 -0.02 2.45 16 41 H 0.04 2.02 8.03 -2.39 -0.02 2.00 16 42 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 45 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 46 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -68.48 385.20 -0.70 -69.18 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: -0.18 Total: 40.04 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 5.84 Total: 14.87 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -5.04 Total: -102.83 kcal Atomic # 8 Polarization: -63.05 SS G_CDS: -2.03 Total: -65.08 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -1.32 Total: -0.28 kcal Total: -68.48 -0.70 -69.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.936 kcal (2) G-P(sol) polarization free energy of solvation -68.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds