Wall clock time and date at job start Tue Mar 31 2020 20:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46497 * 109.46926 * 65.00537 * 4 2 1 6 6 C 1.34773 * 120.00234 * 180.02562 * 5 4 2 7 7 O 1.21595 * 119.99829 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00459 * 179.97438 * 6 5 4 9 9 C 1.47020 * 125.64337 * 0.02591 * 8 6 5 10 10 C 1.54333 * 107.26855 * 181.02150 * 9 8 6 11 11 C 1.55153 * 102.94083 * 22.19041 * 10 9 8 12 12 O 1.42900 * 111.00637 * 82.57212 * 11 10 9 13 13 C 1.50701 * 111.00331 * 206.38523 * 11 10 9 14 14 H 1.08001 * 119.99620 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99958 * 179.97438 * 13 11 10 16 16 N 1.31514 * 120.00263 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99999 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46786 * 89.99970 * 17 15 13 19 19 H 1.48491 * 109.47320 * 210.00115 * 17 15 13 20 20 H 1.48500 * 109.46965 * 330.00271 * 17 15 13 21 21 C 1.47428 * 125.64915 * 179.71232 * 8 6 5 22 22 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 23 23 C 1.50698 * 109.47721 * 295.00119 * 22 2 1 24 24 C 1.33388 * 125.20503 * 89.99547 * 23 22 2 25 25 C 1.38421 * 114.92300 * 179.97438 * 24 23 22 26 26 C 1.33386 * 114.91983 * 359.97438 * 25 24 23 27 27 S 1.75884 * 125.20239 * 269.70087 * 23 22 2 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 32 32 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 33 33 H 0.97005 * 120.00366 * 359.97438 * 5 4 2 34 34 H 1.09005 * 109.88362 * 300.43325 * 9 8 6 35 35 H 1.08993 * 109.88705 * 61.60374 * 9 8 6 36 36 H 1.08997 * 110.71952 * 140.55564 * 10 9 8 37 37 H 1.09002 * 110.71971 * 263.64939 * 10 9 8 38 38 H 0.96695 * 114.00382 * 179.97438 * 12 11 10 39 39 H 0.96999 * 119.99919 * 180.02562 * 16 15 13 40 40 H 1.09000 * 110.36452 * 274.74564 * 21 8 6 41 41 H 1.08995 * 110.36357 * 37.07098 * 21 8 6 42 42 H 1.09000 * 109.47325 * 55.00085 * 22 2 1 43 43 H 1.09008 * 109.47017 * 174.99994 * 22 2 1 44 44 H 1.08000 * 122.53608 * 359.96322 * 24 23 22 45 45 H 1.08002 * 122.53767 * 180.02562 * 25 24 23 46 46 H 1.08001 * 125.20190 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 0.0353 -2.4423 6 6 1.9957 -0.4137 -3.6659 7 8 2.6273 -1.4465 -3.7795 8 7 1.6388 0.2821 -4.7637 9 6 0.8785 1.5405 -4.7708 10 6 0.6854 1.9507 -6.2460 11 6 0.8573 0.6086 -7.0052 12 8 -0.3583 -0.1426 -6.9992 13 6 1.3371 0.8428 -8.4145 14 1 1.5128 1.8492 -8.7648 15 6 1.5528 -0.2278 -9.2562 16 7 1.3393 -1.4533 -8.8294 17 14 2.1470 0.0626 -11.0032 18 1 3.6318 0.0621 -11.0275 19 1 1.6371 -1.0176 -11.8854 20 1 1.6444 1.3741 -11.4854 21 6 1.9518 -0.0891 -6.1557 22 6 2.0399 -0.7212 1.2493 23 6 1.6413 0.0570 2.4766 24 6 0.5065 -0.1094 3.1577 25 6 0.3576 0.7213 4.2549 26 6 1.3717 1.5619 4.4652 27 16 2.6044 1.3185 3.2345 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.1264 -0.7995 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 1.1484 0.8591 -2.3518 34 1 -0.0920 1.3899 -4.2979 35 1 1.4354 2.3132 -4.2410 36 1 -0.3126 2.3589 -6.4053 37 1 1.4472 2.6689 -6.5495 38 1 -0.2997 -0.9894 -7.4624 39 1 1.4915 -2.2064 -9.4214 40 1 2.9406 0.2764 -6.4325 41 1 1.8972 -1.1704 -6.2813 42 1 1.6053 -1.7198 1.2952 43 1 3.1263 -0.7995 1.2056 44 1 -0.2396 -0.8370 2.8744 45 1 -0.5134 0.6905 4.8928 46 1 1.4287 2.2796 5.2702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591967243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:19 Heat of formation + Delta-G solvation = -55.299482 kcal Electronic energy + Delta-G solvation = -26794.141852 eV Core-core repulsion = 23003.012883 eV Total energy + Delta-G solvation = -3791.128969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.70842 -38.61814 -37.48935 -36.31810 -34.21943 -33.30881 -32.12942 -30.43809 -29.72152 -27.83234 -27.24400 -26.10547 -24.65582 -23.32212 -22.38649 -20.62558 -19.65980 -19.53982 -19.34050 -17.57618 -17.34016 -17.05235 -16.06551 -15.56668 -15.47126 -14.98428 -14.84640 -14.64579 -14.20453 -14.01400 -13.64666 -13.28816 -13.01892 -12.93762 -12.83222 -12.80616 -12.77198 -12.40893 -12.06282 -11.95202 -11.61118 -11.45665 -11.40718 -11.11279 -11.03706 -11.02894 -10.88124 -10.76504 -10.57152 -10.48581 -10.16311 -9.60782 -9.37497 -8.91773 -8.78707 -8.76261 -8.66730 -8.34416 -7.64432 -6.27458 -4.36987 0.70152 1.34120 1.71742 2.44849 3.16481 3.22545 3.29139 3.31920 3.79096 4.26007 4.33388 4.49675 4.60086 4.76375 4.80969 4.86024 4.99667 5.17557 5.24693 5.30492 5.37200 5.43240 5.52843 5.65306 5.66939 5.71294 5.80772 5.82271 5.85891 5.99312 6.02330 6.04955 6.10378 6.16022 6.21277 6.52998 6.72768 6.80765 6.89586 6.99265 7.25452 7.34924 7.66705 7.76270 8.02442 8.56867 8.67480 9.17348 9.32764 9.48494 10.79757 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.001970 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.118336 B =14210.214608 C =14342.569638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 H 0.078 0.922 4 C 0.146 3.854 5 N -0.750 5.750 6 C 0.716 3.284 7 O -0.598 6.598 8 N -0.628 5.628 9 C 0.106 3.894 10 C -0.117 4.117 11 C 0.249 3.751 12 O -0.584 6.584 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.894 5.894 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.112 3.888 22 C -0.044 4.044 23 C -0.162 4.162 24 C -0.142 4.142 25 C -0.132 4.132 26 C -0.220 4.220 27 S 0.094 5.906 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.392 0.608 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.386 0.614 39 H 0.271 0.729 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.171 5.527 24.066 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 H 0.096 0.904 4 C 0.021 3.979 5 N -0.408 5.408 6 C 0.418 3.582 7 O -0.477 6.477 8 N -0.364 5.364 9 C -0.017 4.017 10 C -0.154 4.154 11 C 0.208 3.792 12 O -0.394 6.394 13 C -0.576 4.576 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.533 5.533 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.010 4.010 22 C -0.084 4.084 23 C -0.279 4.279 24 C -0.172 4.172 25 C -0.163 4.163 26 C -0.355 4.355 27 S 0.357 5.643 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.226 0.774 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.238 0.762 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.524 5.690 24.033 24.703 hybrid contribution -1.076 -0.543 -0.733 1.410 sum -0.551 5.148 23.300 23.869 Atomic orbital electron populations 1.21910 0.94288 1.02438 1.02081 1.21363 0.97025 1.00195 0.93061 0.90384 1.21108 0.99635 0.94979 0.82184 1.45092 1.62279 1.28839 1.04562 1.15523 0.80040 0.83029 0.79650 1.90883 1.46398 1.24948 1.85512 1.47893 1.57128 1.24835 1.06568 1.21913 0.94738 0.85748 0.99342 1.22597 1.01886 0.98932 0.92031 1.19627 0.81571 0.86022 0.91946 1.86054 1.35838 1.37587 1.79959 1.21497 1.45945 0.93732 0.96404 0.91488 1.25091 0.94001 0.94944 0.99258 1.69571 1.48515 0.98322 1.36915 0.86385 0.78968 0.78087 0.83356 1.20410 1.20996 1.19701 1.23187 0.99539 1.02189 0.76105 1.20157 1.01613 0.97934 0.88682 1.24479 0.98708 1.02552 1.02207 1.20152 0.98169 1.02451 0.96423 1.20183 0.99998 0.97048 0.99077 1.25597 0.98740 1.06535 1.04673 1.84397 1.22360 1.34923 1.22604 0.92381 0.92273 0.92085 0.91880 0.91680 0.77361 0.92712 0.93249 0.90807 0.90511 0.76178 0.91872 0.92529 0.90134 0.89367 0.90244 0.84268 0.84456 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.76 37.16 0.33 -0.99 16 2 C -0.10 -0.87 2.41 -90.62 -0.22 -1.09 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.15 1.81 5.06 -4.04 -0.02 1.79 16 5 N -0.75 -11.25 5.24 -65.23 -0.34 -11.59 16 6 C 0.72 14.71 8.49 -86.92 -0.74 13.97 16 7 O -0.60 -14.67 16.60 5.28 0.09 -14.58 16 8 N -0.63 -13.13 3.32 -176.09 -0.59 -13.72 16 9 C 0.11 1.85 6.15 -3.06 -0.02 1.83 16 10 C -0.12 -2.30 6.12 -24.89 -0.15 -2.45 16 11 C 0.25 6.05 0.89 -89.50 -0.08 5.97 16 12 O -0.58 -15.10 13.19 -35.23 -0.46 -15.56 16 13 C -0.54 -13.94 8.25 -34.44 -0.28 -14.22 16 14 H 0.07 1.69 7.77 -52.49 -0.41 1.29 16 15 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 16 N -0.89 -23.96 10.72 55.43 0.59 -23.37 16 17 Si 0.90 20.34 29.54 -169.99 -5.02 15.31 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 C 0.11 2.73 5.64 -2.41 -0.01 2.71 16 22 C -0.04 -0.35 5.18 -27.89 -0.14 -0.49 16 23 C -0.16 -1.33 5.27 -36.00 -0.19 -1.52 16 24 C -0.14 -1.10 8.60 -41.21 -0.35 -1.46 16 25 C -0.13 -0.97 10.18 -41.21 -0.42 -1.39 16 26 C -0.22 -1.60 11.23 29.04 0.33 -1.27 16 27 S 0.09 0.76 23.33 -107.50 -2.51 -1.75 16 28 H 0.06 0.55 7.18 -51.93 -0.37 0.17 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.50 6.40 -51.93 -0.33 0.17 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.39 4.99 6.64 -40.82 -0.27 4.72 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 38 H 0.39 10.37 6.93 45.56 0.32 10.69 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.06 1.41 8.04 -51.93 -0.42 0.99 16 41 H 0.08 2.22 7.64 -51.93 -0.40 1.83 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 44 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -30.70 385.17 -11.02 -41.72 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -6.51 Total: 14.62 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -2.08 Total: 3.12 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.33 Total: -48.68 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.38 Total: -30.15 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.70 -11.02 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.583 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds