Wall clock time and date at job start Tue Mar 31 2020 20:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 N 1.46497 * 109.46926 * 65.00537 * 4 2 1 6 6 C 1.34773 * 120.00234 * 180.02562 * 5 4 2 7 7 O 1.21595 * 119.99829 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00459 * 179.97438 * 6 5 4 9 9 C 1.47020 * 125.64337 * 0.02591 * 8 6 5 10 10 C 1.54333 * 107.26855 * 181.02150 * 9 8 6 11 11 C 1.55153 * 102.94083 * 22.19041 * 10 9 8 12 12 O 1.42900 * 111.00637 * 82.57212 * 11 10 9 13 13 C 1.50701 * 111.00331 * 206.38523 * 11 10 9 14 14 H 1.08001 * 119.99620 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99958 * 179.97438 * 13 11 10 16 16 N 1.31514 * 120.00263 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99999 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46786 * 89.99970 * 17 15 13 19 19 H 1.48491 * 109.47320 * 210.00115 * 17 15 13 20 20 H 1.48500 * 109.46965 * 330.00271 * 17 15 13 21 21 C 1.47428 * 125.64915 * 179.71232 * 8 6 5 22 22 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 23 23 C 1.50698 * 109.47721 * 295.00119 * 22 2 1 24 24 C 1.33388 * 125.20503 * 89.99547 * 23 22 2 25 25 C 1.38421 * 114.92300 * 179.97438 * 24 23 22 26 26 C 1.33386 * 114.91983 * 359.97438 * 25 24 23 27 27 S 1.75884 * 125.20239 * 269.70087 * 23 22 2 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 32 32 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 33 33 H 0.97005 * 120.00366 * 359.97438 * 5 4 2 34 34 H 1.09005 * 109.88362 * 300.43325 * 9 8 6 35 35 H 1.08993 * 109.88705 * 61.60374 * 9 8 6 36 36 H 1.08997 * 110.71952 * 140.55564 * 10 9 8 37 37 H 1.09002 * 110.71971 * 263.64939 * 10 9 8 38 38 H 0.96695 * 114.00382 * 179.97438 * 12 11 10 39 39 H 0.96999 * 119.99919 * 180.02562 * 16 15 13 40 40 H 1.09000 * 110.36452 * 274.74564 * 21 8 6 41 41 H 1.08995 * 110.36357 * 37.07098 * 21 8 6 42 42 H 1.09000 * 109.47325 * 55.00085 * 22 2 1 43 43 H 1.09008 * 109.47017 * 174.99994 * 22 2 1 44 44 H 1.08000 * 122.53608 * 359.96322 * 24 23 22 45 45 H 1.08002 * 122.53767 * 180.02562 * 25 24 23 46 46 H 1.08001 * 125.20190 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 0.0353 -2.4423 6 6 1.9957 -0.4137 -3.6659 7 8 2.6273 -1.4465 -3.7795 8 7 1.6388 0.2821 -4.7637 9 6 0.8785 1.5405 -4.7708 10 6 0.6854 1.9507 -6.2460 11 6 0.8573 0.6086 -7.0052 12 8 -0.3583 -0.1426 -6.9992 13 6 1.3371 0.8428 -8.4145 14 1 1.5128 1.8492 -8.7648 15 6 1.5528 -0.2278 -9.2562 16 7 1.3393 -1.4533 -8.8294 17 14 2.1470 0.0626 -11.0032 18 1 3.6318 0.0621 -11.0275 19 1 1.6371 -1.0176 -11.8854 20 1 1.6444 1.3741 -11.4854 21 6 1.9518 -0.0891 -6.1557 22 6 2.0399 -0.7212 1.2493 23 6 1.6413 0.0570 2.4766 24 6 0.5065 -0.1094 3.1577 25 6 0.3576 0.7213 4.2549 26 6 1.3717 1.5619 4.4652 27 16 2.6044 1.3185 3.2345 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.1264 -0.7995 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 1.1484 0.8591 -2.3518 34 1 -0.0920 1.3899 -4.2979 35 1 1.4354 2.3132 -4.2410 36 1 -0.3126 2.3589 -6.4053 37 1 1.4472 2.6689 -6.5495 38 1 -0.2997 -0.9894 -7.4624 39 1 1.4915 -2.2064 -9.4214 40 1 2.9406 0.2764 -6.4325 41 1 1.8972 -1.1704 -6.2813 42 1 1.6053 -1.7198 1.2952 43 1 3.1263 -0.7995 1.2056 44 1 -0.2396 -0.8370 2.8744 45 1 -0.5134 0.6905 4.8928 46 1 1.4287 2.2796 5.2702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591967243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:18 Heat of formation + Delta-G solvation = -75.077613 kcal Electronic energy + Delta-G solvation = -26794.999496 eV Core-core repulsion = 23003.012883 eV Total energy + Delta-G solvation = -3791.986613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26533 -39.46768 -38.94035 -37.34631 -36.05587 -34.49973 -34.14222 -31.84286 -30.73435 -29.56203 -28.02802 -27.36452 -26.16910 -24.27329 -23.66951 -21.57225 -21.39559 -20.83830 -20.07332 -19.27324 -18.81267 -18.00923 -17.22924 -16.99648 -16.85036 -16.42015 -16.22326 -15.86261 -15.54250 -15.14114 -14.88545 -14.74095 -14.61724 -13.99215 -13.90249 -13.75102 -13.49911 -13.48096 -13.39571 -13.29437 -13.10557 -12.83613 -12.67259 -12.50523 -12.31132 -12.21247 -12.11457 -12.08999 -11.83583 -11.80428 -11.51431 -11.33973 -11.20504 -10.64317 -10.33673 -10.16687 -9.49433 -9.35061 -9.30238 -8.24806 -6.41762 0.13361 0.77393 1.16041 1.42817 1.44778 1.54737 1.70086 1.91528 2.17122 2.38847 3.01270 3.11308 3.60825 3.81665 3.87246 4.03427 4.11477 4.16597 4.21203 4.30357 4.35231 4.46921 4.55103 4.63322 4.70708 4.76007 4.76873 4.78135 4.87286 4.95353 5.04879 5.05985 5.10634 5.24433 5.28573 5.31916 5.38482 5.40445 5.45437 5.46240 5.54821 5.66075 5.77804 6.03538 6.19333 6.65641 7.08229 7.30935 7.40175 7.58949 8.80822 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.001970 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.118336 B =14210.214608 C =14342.569638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 H 0.083 0.917 4 C 0.144 3.856 5 N -0.728 5.728 6 C 0.709 3.291 7 O -0.646 6.646 8 N -0.633 5.633 9 C 0.108 3.892 10 C -0.111 4.111 11 C 0.232 3.768 12 O -0.590 6.590 13 C -0.555 4.555 14 H 0.071 0.929 15 C 0.023 3.977 16 N -0.919 5.919 17 Si 0.967 3.033 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.264 1.264 21 C 0.126 3.874 22 C -0.041 4.041 23 C -0.173 4.173 24 C -0.144 4.144 25 C -0.141 4.141 26 C -0.220 4.220 27 S 0.073 5.927 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.408 0.592 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.377 0.623 39 H 0.270 0.730 40 H 0.042 0.958 41 H 0.036 0.964 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.150 0.850 45 H 0.156 0.844 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 7.502 25.597 26.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 H 0.101 0.899 4 C 0.020 3.980 5 N -0.385 5.385 6 C 0.410 3.590 7 O -0.529 6.529 8 N -0.370 5.370 9 C -0.014 4.014 10 C -0.149 4.149 11 C 0.191 3.809 12 O -0.399 6.399 13 C -0.593 4.593 14 H 0.090 0.910 15 C -0.177 4.177 16 N -0.559 5.559 17 Si 0.792 3.208 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.188 1.188 21 C 0.002 3.998 22 C -0.081 4.081 23 C -0.290 4.290 24 C -0.174 4.174 25 C -0.172 4.172 26 C -0.355 4.355 27 S 0.336 5.664 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.098 0.902 44 H 0.167 0.833 45 H 0.174 0.826 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.229 7.727 25.617 26.758 hybrid contribution -0.863 -1.167 -1.131 1.840 sum -1.092 6.560 24.486 25.373 Atomic orbital electron populations 1.21891 0.93762 1.02497 1.02295 1.21228 0.97244 0.99981 0.91635 0.89888 1.21277 0.99406 0.94861 0.82461 1.44931 1.61097 1.29152 1.03277 1.15771 0.79824 0.82513 0.80850 1.90844 1.48550 1.27131 1.86393 1.47839 1.57634 1.26132 1.05376 1.22108 0.95844 0.84985 0.98500 1.22602 1.03083 0.96547 0.92646 1.19890 0.80939 0.87999 0.92028 1.86043 1.36853 1.37222 1.79795 1.21844 1.45965 0.93955 0.97511 0.91050 1.25870 0.94194 0.94754 1.02923 1.69692 1.49244 0.98951 1.37968 0.85422 0.78297 0.78130 0.78977 1.20294 1.20987 1.18808 1.22734 0.99083 0.99341 0.78680 1.20106 1.01721 0.98122 0.88123 1.24477 0.99067 1.02954 1.02544 1.20380 0.98121 1.02488 0.96376 1.20447 1.00682 0.96814 0.99207 1.25885 0.98140 1.06790 1.04692 1.84463 1.23194 1.35266 1.23439 0.92834 0.92346 0.91128 0.92499 0.92653 0.75582 0.90979 0.89208 0.89671 0.89194 0.77261 0.92029 0.93984 0.94504 0.88728 0.90182 0.83267 0.82635 0.80316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.76 71.98 0.63 -1.63 16 2 C -0.08 -1.32 2.41 -10.79 -0.03 -1.35 16 3 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.14 3.45 5.06 86.38 0.44 3.89 16 5 N -0.73 -20.85 5.24 -478.54 -2.51 -23.36 16 6 C 0.71 29.09 8.49 179.05 1.52 30.61 16 7 O -0.65 -32.65 16.60 -4.02 -0.07 -32.72 16 8 N -0.63 -26.25 3.32 -829.28 -2.76 -29.01 16 9 C 0.11 3.47 6.15 86.73 0.53 4.00 16 10 C -0.11 -4.15 6.12 31.78 0.19 -3.95 16 11 C 0.23 11.30 0.89 -10.07 -0.01 11.29 16 12 O -0.59 -30.92 13.19 -148.98 -1.97 -32.88 16 13 C -0.55 -28.83 8.25 25.60 0.21 -28.62 16 14 H 0.07 3.56 7.77 -2.91 -0.02 3.53 16 15 C 0.02 1.21 5.30 84.65 0.45 1.65 16 16 N -0.92 -50.68 10.72 21.45 0.23 -50.45 16 17 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 21 C 0.13 6.28 5.64 86.93 0.49 6.77 16 22 C -0.04 -0.59 5.18 29.85 0.15 -0.43 16 23 C -0.17 -2.55 5.27 24.59 0.13 -2.42 16 24 C -0.14 -1.92 8.60 21.22 0.18 -1.74 16 25 C -0.14 -1.72 10.18 21.21 0.22 -1.51 16 26 C -0.22 -2.72 11.23 66.72 0.75 -1.97 16 27 S 0.07 1.07 23.33 -56.49 -1.32 -0.24 16 28 H 0.05 0.87 7.18 -2.39 -0.02 0.85 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.97 6.40 -2.39 -0.02 0.96 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.41 9.29 6.64 -92.70 -0.62 8.67 16 34 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.09 3.10 8.02 -2.39 -0.02 3.08 16 38 H 0.38 20.97 6.93 -74.06 -0.51 20.46 16 39 H 0.27 14.29 8.31 -92.71 -0.77 13.51 16 40 H 0.04 2.17 8.04 -2.39 -0.02 2.15 16 41 H 0.04 2.13 7.64 -2.39 -0.02 2.12 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 45 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 46 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -68.23 385.17 -0.63 -68.86 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: -0.14 Total: 41.29 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 5.86 Total: 14.60 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -5.04 Total: -102.82 kcal Atomic # 8 Polarization: -63.56 SS G_CDS: -2.03 Total: -65.60 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -1.32 Total: -0.24 kcal Total: -68.23 -0.63 -68.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.218 kcal (2) G-P(sol) polarization free energy of solvation -68.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds