Wall clock time and date at job start Tue Mar 31 2020 21:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47309 * 2 1 4 4 C 1.46491 * 119.99992 * 84.99697 * 3 2 1 5 5 C 1.50704 * 109.47335 * 85.00341 * 4 3 2 6 6 H 1.08008 * 119.99674 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00412 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00001 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00116 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47436 * 89.99565 * 9 7 5 11 11 H 1.48494 * 109.47250 * 210.00268 * 9 7 5 12 12 H 1.48503 * 109.46668 * 329.99642 * 9 7 5 13 13 S 1.65602 * 119.99782 * 265.00085 * 3 2 1 14 14 O 1.42100 * 106.40327 * 23.53713 * 13 3 2 15 15 O 1.42093 * 106.39884 * 156.45896 * 13 3 2 16 16 N 1.65597 * 107.21658 * 270.00054 * 13 3 2 17 17 C 1.46498 * 120.00485 * 68.24030 * 16 13 3 18 18 C 1.50705 * 115.54367 * 66.21864 * 17 16 13 19 19 C 1.38258 * 120.00256 * 12.57251 * 18 17 16 20 20 C 1.38219 * 119.99630 * 179.74297 * 19 18 17 21 21 C 1.38252 * 120.00327 * 0.53489 * 20 19 18 22 22 C 1.38225 * 119.99772 * 359.74634 * 21 20 19 23 23 C 1.38220 * 119.99655 * 192.85071 * 18 17 16 24 24 C 1.50700 * 119.99770 * 0.02562 * 23 18 17 25 25 C 1.52997 * 117.50243 * 280.55099 * 17 16 13 26 26 C 1.52994 * 117.50376 * 211.88373 * 17 16 13 27 27 H 1.09006 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47431 * 299.99864 * 1 2 3 29 29 H 1.08992 * 109.47271 * 60.00231 * 1 2 3 30 30 H 1.09005 * 109.46950 * 239.99632 * 2 1 3 31 31 H 1.09004 * 109.46975 * 119.99975 * 2 1 3 32 32 H 1.08995 * 109.47343 * 204.99986 * 4 3 2 33 33 H 1.09000 * 109.47600 * 325.00610 * 4 3 2 34 34 H 0.97001 * 120.00179 * 179.97438 * 8 7 5 35 35 H 0.97003 * 119.99617 * 248.24523 * 16 13 3 36 36 H 1.07998 * 120.00142 * 0.02562 * 19 18 17 37 37 H 1.08000 * 119.99610 * 180.30286 * 20 19 18 38 38 H 1.07997 * 120.00560 * 179.76404 * 21 20 19 39 39 H 1.08000 * 119.99680 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.46940 * 96.39649 * 24 23 18 41 41 H 1.08997 * 109.46893 * 216.38987 * 24 23 18 42 42 H 1.08995 * 109.47499 * 336.39220 * 24 23 18 43 43 H 1.08997 * 117.49319 * 359.97438 * 25 17 16 44 44 H 1.09000 * 117.49939 * 145.01820 * 25 17 16 45 45 H 1.08997 * 117.50254 * 214.97780 * 26 17 16 46 46 H 1.09003 * 117.49679 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 1.2638 5 6 3.4947 1.7888 1.8823 6 1 4.1721 1.1111 1.3839 7 6 3.8529 2.3614 3.0843 8 7 5.0190 2.0819 3.6242 9 14 2.6812 3.5331 3.9467 10 1 1.7965 2.7657 4.8597 11 1 3.4606 4.5249 4.7303 12 1 1.8551 4.2402 2.9354 13 16 2.4122 2.1202 -1.4287 14 8 1.6869 1.4414 -2.4448 15 8 2.3057 3.5185 -1.1999 16 7 4.0144 1.8136 -1.7138 17 6 4.4553 0.4521 -2.0270 18 6 3.9606 -0.1061 -3.3366 19 6 3.3709 0.7306 -4.2660 20 6 2.9221 0.2195 -5.4692 21 6 3.0527 -1.1302 -5.7388 22 6 3.6370 -1.9676 -4.8072 23 6 4.0912 -1.4554 -3.6061 24 6 4.7278 -2.3685 -2.5901 25 6 4.6189 -0.5237 -0.8600 26 6 5.8547 0.0391 -1.5667 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0922 3.1802 1.0755 33 1 1.3617 1.8097 1.9453 34 1 5.2712 2.4850 4.4697 35 1 4.6610 2.5355 -1.6733 36 1 3.2651 1.7842 -4.0538 37 1 2.4659 0.8739 -6.1973 38 1 2.6986 -1.5302 -6.6774 39 1 3.7394 -3.0219 -5.0180 40 1 3.9504 -2.8499 -1.9967 41 1 5.3163 -3.1289 -3.1033 42 1 5.3770 -1.7872 -1.9354 43 1 4.3989 -0.1524 0.1409 44 1 4.3692 -1.5694 -1.0395 45 1 6.4174 -0.6366 -2.2107 46 1 6.4472 0.7804 -1.0304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592067084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:48 Heat of formation + Delta-G solvation = 21.790863 kcal Electronic energy + Delta-G solvation = -29594.260838 eV Core-core repulsion = 25806.474757 eV Total energy + Delta-G solvation = -3787.786081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.40671 -37.32345 -36.65946 -36.13147 -35.27911 -33.40953 -32.65448 -31.06141 -30.47768 -30.20861 -27.22387 -27.13533 -23.14698 -23.03475 -22.12443 -21.67566 -21.36875 -20.51201 -18.62154 -17.26741 -17.14723 -16.72106 -16.54591 -15.78577 -15.64688 -15.13624 -14.72628 -14.21654 -14.13525 -13.95878 -13.82866 -13.42718 -13.09778 -12.95364 -12.78762 -12.47235 -12.30290 -12.08781 -11.89539 -11.83534 -11.73705 -11.45174 -11.41002 -11.18795 -11.10867 -11.02149 -10.92334 -10.81354 -10.56023 -10.43557 -10.26842 -10.14783 -10.10234 -9.50403 -9.23785 -8.67204 -8.51255 -8.22896 -8.08390 -6.18411 -4.18730 1.24346 1.45285 1.60415 3.23206 3.30707 3.37397 3.39461 3.68826 4.07732 4.20988 4.33461 4.57543 4.86202 4.88252 5.00833 5.09221 5.09788 5.15494 5.24216 5.35220 5.40467 5.45805 5.58631 5.63006 5.72850 5.76629 5.78488 5.86727 5.95406 6.03067 6.08388 6.16106 6.25322 6.30059 6.33167 6.50318 6.53129 6.61789 6.63150 6.72780 6.82248 6.85664 7.11000 7.16572 7.27482 7.48271 7.56818 8.39046 8.85903 9.42908 10.93397 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016294 B = 0.004729 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.030953 B = 5919.371781 C = 6441.229176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.983 5.983 4 C 0.213 3.787 5 C -0.542 4.542 6 H 0.086 0.914 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.866 3.134 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.261 1.261 13 S 2.785 3.215 14 O -0.982 6.982 15 O -0.986 6.986 16 N -1.088 6.088 17 C 0.140 3.860 18 C -0.054 4.054 19 C -0.061 4.061 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.128 4.128 23 C -0.074 4.074 24 C -0.167 4.167 25 C -0.214 4.214 26 C -0.161 4.161 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.416 0.584 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.138 0.862 45 H 0.107 0.893 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 -8.446 -13.515 15.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.823 5.823 4 C 0.090 3.910 5 C -0.580 4.580 6 H 0.104 0.896 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.693 3.307 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.186 1.186 13 S 2.793 3.207 14 O -0.965 6.965 15 O -0.970 6.970 16 N -0.844 5.844 17 C 0.049 3.951 18 C -0.056 4.056 19 C -0.080 4.080 20 C -0.145 4.145 21 C -0.138 4.138 22 C -0.146 4.146 23 C -0.075 4.075 24 C -0.222 4.222 25 C -0.251 4.251 26 C -0.199 4.199 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.250 0.750 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.134 0.866 43 H 0.145 0.855 44 H 0.156 0.844 45 H 0.125 0.875 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.757 -7.995 -13.903 16.134 hybrid contribution -0.059 0.896 0.943 1.302 sum -1.817 -7.100 -12.960 14.889 Atomic orbital electron populations 1.22212 0.97066 1.01480 1.02184 1.21056 0.93439 0.82640 1.02593 1.57443 1.78694 1.22982 1.23217 1.19581 0.97963 0.92346 0.81145 1.21520 1.01045 1.29119 1.06351 0.89639 1.24835 0.94975 0.95938 0.96889 1.69880 1.20557 1.43819 1.18872 0.86988 0.81652 0.81688 0.80400 1.20023 1.20986 1.18553 1.01817 0.72904 0.72869 0.73061 1.93609 1.70726 1.75969 1.56219 1.93581 1.85862 1.31414 1.86175 1.55381 1.28880 1.13591 1.86521 1.18661 1.01081 0.83111 0.92227 1.19014 1.00012 0.92853 0.93701 1.20751 0.95171 0.99500 0.92562 1.21014 1.00766 0.95477 0.97275 1.21041 0.99812 0.93770 0.99171 1.20856 1.00574 0.99320 0.93822 1.19495 0.99298 0.92968 0.95735 1.22127 1.01583 0.99516 0.99002 1.25105 1.00370 1.00997 0.98660 1.23416 0.89903 1.03647 1.02943 0.92255 0.92415 0.92552 0.91282 0.90090 0.93736 0.95025 0.92531 0.74987 0.86987 0.86448 0.86543 0.86379 0.90669 0.92091 0.86636 0.85487 0.84433 0.87462 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.24 37.16 0.38 -2.20 16 2 C 0.13 2.16 5.34 -4.04 -0.02 2.14 16 3 N -0.98 -19.27 2.82 -115.67 -0.33 -19.59 16 4 C 0.21 4.87 4.50 -5.20 -0.02 4.85 16 5 C -0.54 -13.79 9.94 -34.44 -0.34 -14.13 16 6 H 0.09 2.23 5.75 -52.48 -0.30 1.93 16 7 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -25.42 13.96 55.43 0.77 -24.64 16 9 Si 0.87 20.54 27.47 -169.99 -4.67 15.87 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 13 S 2.79 54.01 5.82 -107.50 -0.63 53.38 16 14 O -0.98 -19.03 13.24 -57.17 -0.76 -19.79 16 15 O -0.99 -22.40 16.69 -57.17 -0.95 -23.35 16 16 N -1.09 -18.19 5.14 -0.40 0.00 -18.19 16 17 C 0.14 2.10 2.63 -132.97 -0.35 1.75 16 18 C -0.05 -0.80 5.14 -104.62 -0.54 -1.34 16 19 C -0.06 -0.95 7.30 -39.58 -0.29 -1.24 16 20 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 21 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 22 C -0.13 -1.52 9.73 -39.58 -0.39 -1.91 16 23 C -0.07 -0.96 5.81 -104.62 -0.61 -1.57 16 24 C -0.17 -1.73 7.66 36.01 0.28 -1.45 16 25 C -0.21 -3.07 7.88 -26.69 -0.21 -3.28 16 26 C -0.16 -2.10 9.28 -26.69 -0.25 -2.35 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.09 6.97 -51.93 -0.36 0.72 16 31 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 32 H 0.04 1.09 5.97 -51.93 -0.31 0.78 16 33 H 0.03 0.70 7.54 -51.93 -0.39 0.31 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.42 6.47 8.96 -34.46 -0.31 6.16 16 36 H 0.11 1.79 6.37 -52.49 -0.33 1.45 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.07 0.73 7.39 -51.93 -0.38 0.35 16 41 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 42 H 0.12 1.20 2.29 -51.93 -0.12 1.08 16 43 H 0.13 2.22 5.75 -51.93 -0.30 1.92 16 44 H 0.14 1.66 3.74 -54.02 -0.20 1.46 16 45 H 0.11 1.16 6.62 -51.93 -0.34 0.82 16 46 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 365.54 15.07 5.51 5.51 Total: -1.00 -31.51 365.54 -10.63 -42.14 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.32 Total: 11.41 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -3.25 Total: -22.73 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.44 Total: -62.43 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -1.71 Total: -43.15 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 16 Polarization: 54.01 SS G_CDS: -0.63 Total: 53.38 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.51 -10.63 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592067084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.931 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds