Wall clock time and date at job start Tue Mar 31 2020 21:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47309 * 2 1 4 4 C 1.46491 * 119.99992 * 84.99697 * 3 2 1 5 5 C 1.50704 * 109.47335 * 85.00341 * 4 3 2 6 6 H 1.08008 * 119.99674 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00412 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00001 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00116 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47436 * 89.99565 * 9 7 5 11 11 H 1.48494 * 109.47250 * 210.00268 * 9 7 5 12 12 H 1.48503 * 109.46668 * 329.99642 * 9 7 5 13 13 S 1.65602 * 119.99782 * 265.00085 * 3 2 1 14 14 O 1.42100 * 106.40327 * 23.53713 * 13 3 2 15 15 O 1.42093 * 106.39884 * 156.45896 * 13 3 2 16 16 N 1.65597 * 107.21658 * 270.00054 * 13 3 2 17 17 C 1.46498 * 120.00485 * 68.24030 * 16 13 3 18 18 C 1.50705 * 115.54367 * 66.21864 * 17 16 13 19 19 C 1.38258 * 120.00256 * 12.57251 * 18 17 16 20 20 C 1.38219 * 119.99630 * 179.74297 * 19 18 17 21 21 C 1.38252 * 120.00327 * 0.53489 * 20 19 18 22 22 C 1.38225 * 119.99772 * 359.74634 * 21 20 19 23 23 C 1.38220 * 119.99655 * 192.85071 * 18 17 16 24 24 C 1.50700 * 119.99770 * 0.02562 * 23 18 17 25 25 C 1.52997 * 117.50243 * 280.55099 * 17 16 13 26 26 C 1.52994 * 117.50376 * 211.88373 * 17 16 13 27 27 H 1.09006 * 109.47083 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47431 * 299.99864 * 1 2 3 29 29 H 1.08992 * 109.47271 * 60.00231 * 1 2 3 30 30 H 1.09005 * 109.46950 * 239.99632 * 2 1 3 31 31 H 1.09004 * 109.46975 * 119.99975 * 2 1 3 32 32 H 1.08995 * 109.47343 * 204.99986 * 4 3 2 33 33 H 1.09000 * 109.47600 * 325.00610 * 4 3 2 34 34 H 0.97001 * 120.00179 * 179.97438 * 8 7 5 35 35 H 0.97003 * 119.99617 * 248.24523 * 16 13 3 36 36 H 1.07998 * 120.00142 * 0.02562 * 19 18 17 37 37 H 1.08000 * 119.99610 * 180.30286 * 20 19 18 38 38 H 1.07997 * 120.00560 * 179.76404 * 21 20 19 39 39 H 1.08000 * 119.99680 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.46940 * 96.39649 * 24 23 18 41 41 H 1.08997 * 109.46893 * 216.38987 * 24 23 18 42 42 H 1.08995 * 109.47499 * 336.39220 * 24 23 18 43 43 H 1.08997 * 117.49319 * 359.97438 * 25 17 16 44 44 H 1.09000 * 117.49939 * 145.01820 * 25 17 16 45 45 H 1.08997 * 117.50254 * 214.97780 * 26 17 16 46 46 H 1.09003 * 117.49679 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 1.2638 5 6 3.4947 1.7888 1.8823 6 1 4.1721 1.1111 1.3839 7 6 3.8529 2.3614 3.0843 8 7 5.0190 2.0819 3.6242 9 14 2.6812 3.5331 3.9467 10 1 1.7965 2.7657 4.8597 11 1 3.4606 4.5249 4.7303 12 1 1.8551 4.2402 2.9354 13 16 2.4122 2.1202 -1.4287 14 8 1.6869 1.4414 -2.4448 15 8 2.3057 3.5185 -1.1999 16 7 4.0144 1.8136 -1.7138 17 6 4.4553 0.4521 -2.0270 18 6 3.9606 -0.1061 -3.3366 19 6 3.3709 0.7306 -4.2660 20 6 2.9221 0.2195 -5.4692 21 6 3.0527 -1.1302 -5.7388 22 6 3.6370 -1.9676 -4.8072 23 6 4.0912 -1.4554 -3.6061 24 6 4.7278 -2.3685 -2.5901 25 6 4.6189 -0.5237 -0.8600 26 6 5.8547 0.0391 -1.5667 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0922 3.1802 1.0755 33 1 1.3617 1.8097 1.9453 34 1 5.2712 2.4850 4.4697 35 1 4.6610 2.5355 -1.6733 36 1 3.2651 1.7842 -4.0538 37 1 2.4659 0.8739 -6.1973 38 1 2.6986 -1.5302 -6.6774 39 1 3.7394 -3.0219 -5.0180 40 1 3.9504 -2.8499 -1.9967 41 1 5.3163 -3.1289 -3.1033 42 1 5.3770 -1.7872 -1.9354 43 1 4.3989 -0.1524 0.1409 44 1 4.3692 -1.5694 -1.0395 45 1 6.4174 -0.6366 -2.2107 46 1 6.4472 0.7804 -1.0304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592067084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:47 Heat of formation + Delta-G solvation = 1.615008 kcal Electronic energy + Delta-G solvation = -29595.135729 eV Core-core repulsion = 25806.474757 eV Total energy + Delta-G solvation = -3788.660972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45112 -38.41050 -38.26637 -37.69574 -36.89996 -34.66302 -34.49722 -32.18598 -31.79182 -31.46647 -28.89825 -28.13711 -24.68428 -24.11525 -23.34470 -23.15700 -22.46777 -21.64247 -20.07725 -19.03691 -18.72009 -18.33531 -17.83735 -17.11929 -16.77256 -16.44727 -16.09159 -15.75900 -15.43706 -15.17113 -14.88304 -14.68151 -14.52171 -14.24150 -14.13515 -13.88347 -13.72539 -13.55071 -13.47413 -13.17093 -13.09958 -12.96162 -12.74004 -12.68279 -12.58299 -12.36409 -12.17460 -12.11172 -11.97622 -11.82690 -11.71944 -11.61551 -11.35262 -10.98793 -10.74216 -10.49112 -9.74764 -9.50598 -9.22428 -8.25547 -6.28129 -0.29143 0.46592 0.60581 1.34449 1.39689 1.48423 1.91237 2.36083 2.53476 2.66386 3.08955 3.13792 3.39700 3.49725 3.83012 3.92338 3.99021 4.06934 4.15410 4.23262 4.33479 4.44088 4.48462 4.50038 4.65001 4.70778 4.75054 4.87006 4.90807 4.93889 4.99456 5.02163 5.04170 5.06347 5.10723 5.26730 5.29384 5.38683 5.43179 5.45846 5.52799 5.66175 5.72505 5.76406 5.83664 6.10796 6.21484 6.36876 6.81218 7.36008 8.88311 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016294 B = 0.004729 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.030953 B = 5919.371781 C = 6441.229176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.124 3.876 3 N -0.985 5.985 4 C 0.220 3.780 5 C -0.533 4.533 6 H 0.073 0.927 7 C 0.027 3.973 8 N -0.933 5.933 9 Si 0.915 3.085 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.259 1.259 13 S 2.795 3.205 14 O -0.981 6.981 15 O -1.024 7.024 16 N -1.087 6.087 17 C 0.127 3.873 18 C -0.070 4.070 19 C -0.092 4.092 20 C -0.142 4.142 21 C -0.119 4.119 22 C -0.127 4.127 23 C -0.079 4.079 24 C -0.168 4.168 25 C -0.215 4.215 26 C -0.146 4.146 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.028 0.972 33 H 0.044 0.956 34 H 0.265 0.735 35 H 0.418 0.582 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.165 0.835 45 H 0.137 0.863 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 -10.831 -14.625 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.825 5.825 4 C 0.095 3.905 5 C -0.572 4.572 6 H 0.090 0.910 7 C -0.173 4.173 8 N -0.573 5.573 9 Si 0.740 3.260 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.183 1.183 13 S 2.804 3.196 14 O -0.965 6.965 15 O -1.009 7.009 16 N -0.844 5.844 17 C 0.037 3.963 18 C -0.072 4.072 19 C -0.110 4.110 20 C -0.160 4.160 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.080 4.080 24 C -0.223 4.223 25 C -0.252 4.252 26 C -0.185 4.185 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.253 0.747 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.130 0.870 43 H 0.112 0.888 44 H 0.182 0.818 45 H 0.154 0.846 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.388 -10.392 -15.025 18.425 hybrid contribution 0.178 1.550 1.161 1.945 sum -2.210 -8.843 -13.864 16.592 Atomic orbital electron populations 1.22203 0.95618 1.03301 1.01574 1.21270 0.94645 0.81076 1.03156 1.57392 1.79195 1.24044 1.21908 1.19322 0.96848 0.91803 0.82496 1.21778 1.01804 1.27805 1.05834 0.90955 1.25515 0.96247 0.97584 0.97923 1.69989 1.22290 1.45513 1.19539 0.86190 0.80124 0.80070 0.79612 1.18513 1.21105 1.18315 1.01387 0.73373 0.71927 0.72925 1.93603 1.71288 1.75638 1.55948 1.93521 1.86725 1.33930 1.86686 1.55160 1.28004 1.14919 1.86317 1.18895 1.02497 0.82032 0.92876 1.19073 1.00949 0.93887 0.93259 1.20813 0.97132 0.99001 0.94084 1.21259 1.01003 0.96801 0.96955 1.21411 0.98909 0.92988 1.00363 1.21267 0.99321 1.00826 0.93076 1.19807 0.99029 0.92354 0.96774 1.22125 1.01916 0.99599 0.98676 1.25147 1.01292 1.02135 0.96622 1.23513 0.89264 1.03308 1.02382 0.89245 0.92684 0.93473 0.90215 0.89979 0.95424 0.93842 0.92584 0.74712 0.88869 0.85394 0.83676 0.83337 0.89715 0.89667 0.86997 0.88828 0.81803 0.84569 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.81 10.24 71.98 0.74 -4.07 16 2 C 0.12 4.02 5.34 86.38 0.46 4.48 16 3 N -0.99 -38.73 2.82 -519.86 -1.47 -40.20 16 4 C 0.22 10.09 4.50 85.64 0.39 10.48 16 5 C -0.53 -27.53 9.94 25.60 0.25 -27.28 16 6 H 0.07 3.88 5.75 -2.91 -0.02 3.86 16 7 C 0.03 1.45 5.47 84.65 0.46 1.91 16 8 N -0.93 -54.01 13.96 21.45 0.30 -53.71 16 9 Si 0.92 42.28 27.47 68.60 1.88 44.16 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.26 -11.78 6.54 99.48 0.65 -11.13 16 13 S 2.80 110.63 5.82 -56.49 -0.33 110.31 16 14 O -0.98 -38.33 13.24 -128.00 -1.69 -40.03 16 15 O -1.02 -48.05 16.69 -128.00 -2.14 -50.18 16 16 N -1.09 -37.40 5.14 -155.19 -0.80 -38.20 16 17 C 0.13 3.77 2.63 2.86 0.01 3.77 16 18 C -0.07 -1.99 5.14 -19.86 -0.10 -2.10 16 19 C -0.09 -2.83 7.30 22.27 0.16 -2.67 16 20 C -0.14 -3.70 10.05 22.27 0.22 -3.48 16 21 C -0.12 -2.52 10.05 22.27 0.22 -2.29 16 22 C -0.13 -2.57 9.73 22.27 0.22 -2.35 16 23 C -0.08 -1.82 5.81 -19.87 -0.12 -1.93 16 24 C -0.17 -2.87 7.66 71.24 0.55 -2.33 16 25 C -0.21 -6.00 7.88 30.62 0.24 -5.76 16 26 C -0.15 -3.70 9.28 30.62 0.28 -3.42 16 27 H 0.09 2.00 8.14 -2.38 -0.02 1.99 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 2.41 6.97 -2.38 -0.02 2.39 16 31 H 0.08 2.64 8.11 -2.38 -0.02 2.62 16 32 H 0.03 1.38 5.97 -2.39 -0.01 1.36 16 33 H 0.04 1.89 7.54 -2.39 -0.02 1.87 16 34 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.42 13.70 8.96 -96.75 -0.87 12.84 16 36 H 0.09 3.11 6.37 -2.91 -0.02 3.09 16 37 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.08 1.33 7.39 -2.39 -0.02 1.31 16 41 H 0.08 1.08 8.13 -2.39 -0.02 1.06 16 42 H 0.11 2.00 2.29 -2.39 -0.01 1.99 16 43 H 0.09 3.33 5.75 -2.39 -0.01 3.31 16 44 H 0.17 3.62 3.74 -4.36 -0.02 3.61 16 45 H 0.14 2.63 6.62 -2.39 -0.02 2.62 16 46 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -68.55 365.54 -0.17 -68.72 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: 0.09 Total: 36.17 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 3.99 Total: -37.04 kcal Atomic # 7 Polarization: -130.14 SS G_CDS: -1.97 Total: -132.11 kcal Atomic # 8 Polarization: -86.38 SS G_CDS: -3.83 Total: -90.21 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.88 Total: 44.16 kcal Atomic # 16 Polarization: 110.63 SS G_CDS: -0.33 Total: 110.31 kcal Total: -68.55 -0.17 -68.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592067084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.333 kcal (2) G-P(sol) polarization free energy of solvation -68.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds