Wall clock time and date at job start Tue Mar 31 2020 21:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46991 * 2 1 4 4 C 1.50692 * 109.47130 * 120.00730 * 2 1 3 5 5 O 1.21290 * 120.00206 * 120.00253 * 4 2 1 6 6 N 1.34776 * 120.00021 * 299.99434 * 4 2 1 7 7 C 1.46506 * 119.99763 * 179.72660 * 6 4 2 8 8 C 1.53006 * 109.46616 * 180.27830 * 7 6 4 9 9 C 1.50704 * 109.46604 * 179.97438 * 8 7 6 10 10 C 1.33387 * 125.20066 * 89.72342 * 9 8 7 11 11 C 1.38430 * 114.91983 * 179.85783 * 10 9 8 12 12 C 1.33384 * 114.91752 * 0.42497 * 11 10 9 13 13 S 1.75882 * 125.20290 * 270.02229 * 9 8 7 14 14 N 1.46904 * 109.46812 * 240.00570 * 2 1 3 15 15 C 1.48537 * 111.00076 * 54.10422 * 14 2 1 16 16 C 1.54940 * 103.22665 * 159.72063 * 15 14 2 17 17 C 1.54592 * 102.91801 * 322.58663 * 16 15 14 18 18 O 1.42903 * 110.39364 * 262.99373 * 17 16 15 19 19 C 1.50703 * 110.30517 * 140.87786 * 17 16 15 20 20 H 1.08002 * 119.99702 * 244.27583 * 19 17 16 21 21 C 1.37872 * 120.00212 * 64.28236 * 19 17 16 22 22 N 1.31513 * 120.00230 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 119.99764 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47418 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47004 * 119.99898 * 23 21 19 26 26 H 1.48499 * 109.46909 * 239.99440 * 23 21 19 27 27 C 1.47903 * 111.00029 * 171.50028 * 14 2 1 28 28 H 1.09006 * 109.46959 * 294.27630 * 1 2 3 29 29 H 1.08999 * 109.47628 * 54.27612 * 1 2 3 30 30 H 1.08998 * 109.47425 * 174.27737 * 1 2 3 31 31 H 0.97000 * 120.00159 * 0.02562 * 6 4 2 32 32 H 1.08997 * 109.47082 * 300.27629 * 7 6 4 33 33 H 1.08993 * 109.47347 * 60.27967 * 7 6 4 34 34 H 1.08997 * 109.47231 * 299.99708 * 8 7 6 35 35 H 1.09001 * 109.46980 * 60.00255 * 8 7 6 36 36 H 1.08004 * 122.54011 * 0.02562 * 10 9 8 37 37 H 1.07995 * 122.53739 * 180.19864 * 11 10 9 38 38 H 1.08001 * 125.20404 * 179.79136 * 12 11 10 39 39 H 1.09002 * 110.66526 * 278.15722 * 15 14 2 40 40 H 1.09001 * 110.66662 * 41.28261 * 15 14 2 41 41 H 1.08996 * 110.71848 * 204.23061 * 16 15 14 42 42 H 1.08996 * 110.72054 * 80.94679 * 16 15 14 43 43 H 0.96704 * 114.00258 * 295.77329 * 18 17 16 44 44 H 0.97000 * 120.00325 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.91248 * 333.51270 * 27 14 2 46 46 H 1.09004 * 109.91477 * 94.60280 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7297 -1.6966 1.1189 6 7 1.7068 -0.2502 2.4545 7 6 2.1903 -0.9445 3.6506 8 6 1.6757 -0.2265 4.8999 9 6 2.1725 -0.9411 6.1302 10 6 3.3188 -0.6806 6.7605 11 6 3.5640 -1.4660 7.8737 12 6 2.6208 -2.3702 8.1422 13 16 1.3328 -2.2510 6.9504 14 7 2.0196 -0.6924 -1.1996 15 6 1.4305 -0.1059 -2.4305 16 6 2.4096 -0.5586 -3.5427 17 6 3.7877 -0.4670 -2.8481 18 8 4.4252 0.7713 -3.1679 19 6 4.6595 -1.6249 -3.2611 20 1 4.9752 -2.3517 -2.5272 21 6 5.0540 -1.7564 -4.5756 22 7 4.6692 -0.8716 -5.4693 23 14 6.1339 -3.1920 -5.0875 24 1 6.4253 -4.0392 -3.9032 25 1 5.4284 -4.0009 -6.1138 26 1 7.4070 -2.6770 -5.6524 27 6 3.4838 -0.5379 -1.3402 28 1 -0.3633 0.4225 0.9368 29 1 -0.3634 0.6000 -0.8343 30 1 -0.3634 -1.0225 -0.1025 31 1 1.1489 0.5383 2.5436 32 1 1.8264 -1.9719 3.6462 33 1 3.2802 -0.9450 3.6548 34 1 2.0395 0.8010 4.9042 35 1 0.5857 -0.2261 4.8956 36 1 4.0027 0.0868 6.4290 37 1 4.4532 -1.3575 8.4768 38 1 2.6443 -3.0686 8.9657 39 1 0.4331 -0.5079 -2.6089 40 1 1.4015 0.9816 -2.3627 41 1 2.3624 0.1171 -4.3966 42 1 2.1990 -1.5834 -3.8482 43 1 4.6408 0.8722 -4.1052 44 1 4.9464 -0.9643 -6.3942 45 1 3.8088 0.3809 -0.8522 46 1 3.9918 -1.3939 -0.8958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:18 Heat of formation + Delta-G solvation = -46.202518 kcal Electronic energy + Delta-G solvation = -26882.476173 eV Core-core repulsion = 23091.741678 eV Total energy + Delta-G solvation = -3790.734495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.91560 -38.40526 -37.89126 -35.46576 -34.93810 -32.65555 -31.98896 -31.45796 -28.45523 -28.16718 -27.46191 -24.92966 -24.31539 -23.48556 -22.34928 -20.64132 -19.77717 -19.48970 -19.31643 -17.47712 -17.07085 -16.68441 -16.28393 -15.87850 -15.42528 -15.02683 -14.85827 -14.60321 -13.99953 -13.97124 -13.76951 -13.33165 -13.14580 -13.04015 -12.67680 -12.56650 -12.38704 -12.16433 -12.13240 -12.04038 -11.64794 -11.62767 -11.51016 -11.21180 -11.02911 -10.95790 -10.80197 -10.61363 -10.35706 -10.21582 -9.85934 -9.41903 -9.09489 -9.04510 -8.97888 -8.77590 -8.50699 -8.02532 -7.72900 -6.11828 -4.16276 0.65560 1.30453 1.68066 2.41864 2.90663 3.13477 3.29507 3.37555 3.44866 4.39886 4.43349 4.54474 4.63784 4.69257 4.77501 4.94097 5.07654 5.14606 5.19137 5.25349 5.32003 5.34278 5.57976 5.60000 5.74928 5.75553 5.82860 5.87024 5.96321 6.05960 6.12820 6.16213 6.18551 6.28550 6.41295 6.49040 6.58212 7.07492 7.16564 7.35102 7.45573 7.61328 7.72349 7.77246 7.93397 8.26849 8.47272 8.86596 9.49964 9.60149 10.96077 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.002243 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.152303 B =12482.465019 C =13443.770393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 H 0.063 0.937 4 C 0.519 3.481 5 O -0.507 6.507 6 N -0.741 5.741 7 C 0.127 3.873 8 C -0.059 4.059 9 C -0.172 4.172 10 C -0.135 4.135 11 C -0.134 4.134 12 C -0.215 4.215 13 S 0.101 5.899 14 N -0.492 5.492 15 C 0.033 3.967 16 C -0.118 4.118 17 C 0.241 3.759 18 O -0.596 6.596 19 C -0.521 4.521 20 H 0.063 0.937 21 C 0.066 3.934 22 N -0.903 5.903 23 Si 0.899 3.101 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.284 1.284 27 C 0.061 3.939 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.163 0.837 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.383 0.617 44 H 0.265 0.735 45 H 0.028 0.972 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 3.861 23.119 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.058 4.058 3 H 0.080 0.920 4 C 0.304 3.696 5 O -0.379 6.379 6 N -0.396 5.396 7 C 0.002 3.998 8 C -0.099 4.099 9 C -0.290 4.290 10 C -0.166 4.166 11 C -0.164 4.164 12 C -0.351 4.351 13 S 0.364 5.636 14 N -0.217 5.217 15 C -0.094 4.094 16 C -0.157 4.157 17 C 0.201 3.799 18 O -0.406 6.406 19 C -0.560 4.560 20 H 0.082 0.918 21 C -0.135 4.135 22 N -0.544 5.544 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.066 4.066 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.181 0.819 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.235 0.765 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.027 1.916 23.332 25.877 hybrid contribution 1.950 1.087 -0.597 2.311 sum -9.077 3.004 22.735 24.664 Atomic orbital electron populations 1.21813 0.92629 1.03470 1.01878 1.21771 0.96689 0.96127 0.91164 0.91977 1.20649 0.80158 0.84848 0.83956 1.90736 1.35761 1.25189 1.86226 1.45984 1.55528 1.32564 1.05498 1.21260 0.99858 0.96274 0.82384 1.20312 1.01292 0.99014 0.89277 1.24261 0.99773 1.02579 1.02360 1.20188 0.97312 1.02493 0.96591 1.20190 1.00637 0.96872 0.98707 1.25640 0.99007 1.05731 1.04728 1.84370 1.23799 1.33204 1.22228 1.64733 1.06944 1.50512 0.99542 1.23332 0.98850 0.96148 0.91102 1.22979 0.95778 1.01184 0.95711 1.19394 0.89092 0.83134 0.88247 1.86080 1.81835 1.39929 1.32747 1.21770 1.30669 1.09348 0.94172 0.91832 1.25010 0.95689 0.96453 0.96343 1.69627 1.46031 1.35880 1.02861 0.86409 0.80053 0.82254 0.78543 1.19593 1.20958 1.21007 1.22893 0.86030 0.99884 0.97779 0.92382 0.91369 0.91127 0.76921 0.91350 0.91156 0.89192 0.90031 0.84125 0.84238 0.81922 0.91459 0.94823 0.91607 0.91300 0.76543 0.92525 0.95372 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.68 37.16 0.32 -1.34 16 2 C 0.06 0.87 2.25 -68.87 -0.16 0.71 16 3 H 0.06 0.94 7.86 -51.93 -0.41 0.53 16 4 C 0.52 8.34 6.95 -10.99 -0.08 8.26 16 5 O -0.51 -10.61 14.97 5.55 0.08 -10.52 16 6 N -0.74 -8.25 5.41 -60.29 -0.33 -8.57 16 7 C 0.13 1.33 5.66 -4.04 -0.02 1.31 16 8 C -0.06 -0.43 5.82 -27.88 -0.16 -0.60 16 9 C -0.17 -1.45 5.76 -36.00 -0.21 -1.66 16 10 C -0.14 -1.12 10.05 -41.21 -0.41 -1.53 16 11 C -0.13 -1.03 10.18 -41.21 -0.42 -1.45 16 12 C -0.22 -1.63 11.23 29.04 0.33 -1.30 16 13 S 0.10 0.82 23.33 -107.50 -2.51 -1.68 16 14 N -0.49 -9.99 4.82 -223.88 -1.08 -11.07 16 15 C 0.03 0.64 5.20 -1.89 -0.01 0.63 16 16 C -0.12 -2.79 5.49 -24.87 -0.14 -2.93 16 17 C 0.24 6.28 0.99 -90.42 -0.09 6.19 16 18 O -0.60 -16.01 12.93 -35.23 -0.46 -16.47 16 19 C -0.52 -14.75 8.10 -34.44 -0.28 -15.03 16 20 H 0.06 1.85 7.35 -52.49 -0.39 1.46 16 21 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 22 N -0.90 -24.74 10.88 55.43 0.60 -24.14 16 23 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.06 1.46 5.17 -2.76 -0.01 1.44 16 28 H 0.06 0.49 7.41 -51.93 -0.38 0.11 16 29 H 0.07 0.77 7.15 -51.93 -0.37 0.40 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.40 3.08 7.83 -40.82 -0.32 2.76 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.07 1.16 7.77 -51.93 -0.40 0.76 16 40 H 0.03 0.62 8.02 -51.93 -0.42 0.21 16 41 H 0.07 1.59 8.06 -51.93 -0.42 1.18 16 42 H 0.07 1.74 7.86 -51.93 -0.41 1.33 16 43 H 0.38 10.41 7.05 45.56 0.32 10.73 16 44 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.03 0.66 7.41 -51.93 -0.38 0.27 16 46 H 0.09 2.32 6.57 -51.93 -0.34 1.98 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -32.50 383.51 -10.79 -43.30 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -6.44 Total: 12.34 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.43 Total: -5.57 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.80 Total: -43.78 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.37 Total: -26.99 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.50 -10.79 -43.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.907 kcal (2) G-P(sol) polarization free energy of solvation -32.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds