Wall clock time and date at job start Tue Mar 31 2020 21:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46991 * 2 1 4 4 C 1.50692 * 109.47130 * 120.00730 * 2 1 3 5 5 O 1.21290 * 120.00206 * 120.00253 * 4 2 1 6 6 N 1.34776 * 120.00021 * 299.99434 * 4 2 1 7 7 C 1.46506 * 119.99763 * 179.72660 * 6 4 2 8 8 C 1.53006 * 109.46616 * 180.27830 * 7 6 4 9 9 C 1.50704 * 109.46604 * 179.97438 * 8 7 6 10 10 C 1.33387 * 125.20066 * 89.72342 * 9 8 7 11 11 C 1.38430 * 114.91983 * 179.85783 * 10 9 8 12 12 C 1.33384 * 114.91752 * 0.42497 * 11 10 9 13 13 S 1.75882 * 125.20290 * 270.02229 * 9 8 7 14 14 N 1.46904 * 109.46812 * 240.00570 * 2 1 3 15 15 C 1.48537 * 111.00076 * 54.10422 * 14 2 1 16 16 C 1.54940 * 103.22665 * 159.72063 * 15 14 2 17 17 C 1.54592 * 102.91801 * 322.58663 * 16 15 14 18 18 O 1.42903 * 110.39364 * 262.99373 * 17 16 15 19 19 C 1.50703 * 110.30517 * 140.87786 * 17 16 15 20 20 H 1.08002 * 119.99702 * 244.27583 * 19 17 16 21 21 C 1.37872 * 120.00212 * 64.28236 * 19 17 16 22 22 N 1.31513 * 120.00230 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 119.99764 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47418 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47004 * 119.99898 * 23 21 19 26 26 H 1.48499 * 109.46909 * 239.99440 * 23 21 19 27 27 C 1.47903 * 111.00029 * 171.50028 * 14 2 1 28 28 H 1.09006 * 109.46959 * 294.27630 * 1 2 3 29 29 H 1.08999 * 109.47628 * 54.27612 * 1 2 3 30 30 H 1.08998 * 109.47425 * 174.27737 * 1 2 3 31 31 H 0.97000 * 120.00159 * 0.02562 * 6 4 2 32 32 H 1.08997 * 109.47082 * 300.27629 * 7 6 4 33 33 H 1.08993 * 109.47347 * 60.27967 * 7 6 4 34 34 H 1.08997 * 109.47231 * 299.99708 * 8 7 6 35 35 H 1.09001 * 109.46980 * 60.00255 * 8 7 6 36 36 H 1.08004 * 122.54011 * 0.02562 * 10 9 8 37 37 H 1.07995 * 122.53739 * 180.19864 * 11 10 9 38 38 H 1.08001 * 125.20404 * 179.79136 * 12 11 10 39 39 H 1.09002 * 110.66526 * 278.15722 * 15 14 2 40 40 H 1.09001 * 110.66662 * 41.28261 * 15 14 2 41 41 H 1.08996 * 110.71848 * 204.23061 * 16 15 14 42 42 H 1.08996 * 110.72054 * 80.94679 * 16 15 14 43 43 H 0.96704 * 114.00258 * 295.77329 * 18 17 16 44 44 H 0.97000 * 120.00325 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.91248 * 333.51270 * 27 14 2 46 46 H 1.09004 * 109.91477 * 94.60280 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.7297 -1.6966 1.1189 6 7 1.7068 -0.2502 2.4545 7 6 2.1903 -0.9445 3.6506 8 6 1.6757 -0.2265 4.8999 9 6 2.1725 -0.9411 6.1302 10 6 3.3188 -0.6806 6.7605 11 6 3.5640 -1.4660 7.8737 12 6 2.6208 -2.3702 8.1422 13 16 1.3328 -2.2510 6.9504 14 7 2.0196 -0.6924 -1.1996 15 6 1.4305 -0.1059 -2.4305 16 6 2.4096 -0.5586 -3.5427 17 6 3.7877 -0.4670 -2.8481 18 8 4.4252 0.7713 -3.1679 19 6 4.6595 -1.6249 -3.2611 20 1 4.9752 -2.3517 -2.5272 21 6 5.0540 -1.7564 -4.5756 22 7 4.6692 -0.8716 -5.4693 23 14 6.1339 -3.1920 -5.0875 24 1 6.4253 -4.0392 -3.9032 25 1 5.4284 -4.0009 -6.1138 26 1 7.4070 -2.6770 -5.6524 27 6 3.4838 -0.5379 -1.3402 28 1 -0.3633 0.4225 0.9368 29 1 -0.3634 0.6000 -0.8343 30 1 -0.3634 -1.0225 -0.1025 31 1 1.1489 0.5383 2.5436 32 1 1.8264 -1.9719 3.6462 33 1 3.2802 -0.9450 3.6548 34 1 2.0395 0.8010 4.9042 35 1 0.5857 -0.2261 4.8956 36 1 4.0027 0.0868 6.4290 37 1 4.4532 -1.3575 8.4768 38 1 2.6443 -3.0686 8.9657 39 1 0.4331 -0.5079 -2.6089 40 1 1.4015 0.9816 -2.3627 41 1 2.3624 0.1171 -4.3966 42 1 2.1990 -1.5834 -3.8482 43 1 4.6408 0.8722 -4.1052 44 1 4.9464 -0.9643 -6.3942 45 1 3.8088 0.3809 -0.8522 46 1 3.9918 -1.3939 -0.8958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:18 Heat of formation + Delta-G solvation = -70.596053 kcal Electronic energy + Delta-G solvation = -26883.533956 eV Core-core repulsion = 23091.741678 eV Total energy + Delta-G solvation = -3791.792278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24725 -39.70552 -38.87110 -36.87941 -36.32946 -34.14112 -33.82823 -32.62636 -30.11070 -29.54839 -28.65367 -26.28112 -25.81043 -24.51208 -23.14138 -22.11745 -21.29437 -21.00926 -20.13610 -19.15185 -18.30751 -17.76480 -17.52832 -16.94564 -16.71992 -16.42611 -16.29793 -16.05261 -15.75339 -15.26016 -15.07186 -14.45538 -14.08486 -14.04788 -13.87105 -13.75279 -13.62288 -13.39191 -13.30017 -13.20079 -13.03938 -12.98944 -12.86693 -12.68575 -12.54423 -12.36122 -12.27836 -12.17150 -12.00685 -11.86747 -11.63405 -11.09199 -10.74887 -10.61699 -10.13688 -10.09506 -9.60096 -9.39754 -9.30267 -8.23232 -6.35687 0.04817 0.71174 1.08653 1.36598 1.39171 1.51635 1.66262 1.80229 2.10027 2.38497 2.95354 3.11890 3.68053 3.89238 3.94475 3.98260 4.02149 4.04783 4.16286 4.25677 4.28207 4.38324 4.44955 4.50797 4.53982 4.65913 4.71415 4.72371 4.87352 4.87600 4.91103 4.99354 5.16703 5.22681 5.23610 5.28777 5.36694 5.40871 5.44342 5.58333 5.61936 5.76269 5.98861 6.09544 6.18788 6.60425 6.67310 7.31644 7.34148 7.44890 8.83031 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.002243 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.152303 B =12482.465019 C =13443.770393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.051 3.949 3 H 0.077 0.923 4 C 0.515 3.485 5 O -0.567 6.567 6 N -0.715 5.715 7 C 0.130 3.870 8 C -0.047 4.047 9 C -0.185 4.185 10 C -0.144 4.144 11 C -0.145 4.145 12 C -0.217 4.217 13 S 0.083 5.917 14 N -0.506 5.506 15 C 0.047 3.953 16 C -0.111 4.111 17 C 0.226 3.774 18 O -0.601 6.601 19 C -0.554 4.554 20 H 0.041 0.959 21 C 0.030 3.970 22 N -0.912 5.912 23 Si 0.958 3.042 24 H -0.279 1.279 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.077 3.923 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.418 0.582 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.182 0.818 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.044 0.956 43 H 0.379 0.621 44 H 0.271 0.729 45 H 0.025 0.975 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.589 5.053 24.213 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.061 4.061 3 H 0.094 0.906 4 C 0.301 3.699 5 O -0.444 6.444 6 N -0.370 5.370 7 C 0.005 3.995 8 C -0.086 4.086 9 C -0.303 4.303 10 C -0.175 4.175 11 C -0.176 4.176 12 C -0.353 4.353 13 S 0.347 5.653 14 N -0.232 5.232 15 C -0.080 4.080 16 C -0.150 4.150 17 C 0.186 3.814 18 O -0.410 6.410 19 C -0.592 4.592 20 H 0.059 0.941 21 C -0.170 4.170 22 N -0.552 5.552 23 Si 0.783 3.217 24 H -0.204 1.204 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.051 4.051 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.256 0.744 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.200 0.800 39 H 0.115 0.885 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.229 0.771 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.657 3.162 24.459 27.721 hybrid contribution 2.471 0.722 -0.866 2.716 sum -10.186 3.885 23.593 25.990 Atomic orbital electron populations 1.21840 0.89059 1.03460 1.04705 1.21969 0.99357 0.95949 0.88866 0.90573 1.20857 0.79465 0.84159 0.85415 1.90725 1.38582 1.27923 1.87138 1.45736 1.54423 1.32597 1.04245 1.21242 0.98786 0.96038 0.83421 1.20251 1.02253 0.99243 0.86893 1.24423 1.00104 1.02871 1.02903 1.20462 0.97408 1.02801 0.96783 1.20467 1.01377 0.96819 0.98889 1.25946 0.98462 1.05945 1.04917 1.84395 1.24518 1.33566 1.22867 1.64608 1.04553 1.52346 1.01677 1.23259 0.98734 0.97138 0.88869 1.22745 0.95868 0.99634 0.96749 1.19610 0.89816 0.82032 0.89942 1.86064 1.82206 1.40376 1.32372 1.21923 1.32479 1.10284 0.94504 0.94084 1.25639 0.96576 0.98704 0.96102 1.69677 1.45945 1.36489 1.03099 0.85517 0.78809 0.79447 0.77886 1.20438 1.19897 1.19973 1.22513 0.88596 0.98107 0.95859 0.88375 0.90094 0.92234 0.74415 0.93016 0.93087 0.87255 0.88267 0.83166 0.82547 0.80048 0.88528 0.93126 0.92519 0.93694 0.77076 0.91996 0.95715 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.68 71.98 0.62 -2.03 16 2 C 0.05 1.50 2.25 44.17 0.10 1.60 16 3 H 0.08 2.08 7.86 -2.39 -0.02 2.07 16 4 C 0.51 16.23 6.95 87.65 0.61 16.84 16 5 O -0.57 -24.53 14.97 -3.06 -0.05 -24.57 16 6 N -0.72 -14.60 5.41 -463.05 -2.51 -17.11 16 7 C 0.13 2.63 5.66 86.38 0.49 3.11 16 8 C -0.05 -0.59 5.82 29.85 0.17 -0.41 16 9 C -0.19 -2.89 5.76 24.59 0.14 -2.75 16 10 C -0.14 -2.21 10.05 21.22 0.21 -1.99 16 11 C -0.15 -2.06 10.18 21.22 0.22 -1.84 16 12 C -0.22 -3.02 11.23 66.72 0.75 -2.27 16 13 S 0.08 1.29 23.33 -56.49 -1.32 -0.02 16 14 N -0.51 -20.37 4.82 -862.22 -4.15 -24.52 16 15 C 0.05 1.75 5.20 86.65 0.45 2.20 16 16 C -0.11 -5.32 5.49 31.80 0.17 -5.15 16 17 C 0.23 12.06 0.99 -10.66 -0.01 12.05 16 18 O -0.60 -32.89 12.93 -148.98 -1.93 -34.82 16 19 C -0.55 -32.54 8.10 25.60 0.21 -32.33 16 20 H 0.04 2.52 7.35 -2.91 -0.02 2.50 16 21 C 0.03 1.66 5.26 84.65 0.45 2.10 16 22 N -0.91 -50.32 10.88 21.45 0.23 -50.09 16 23 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 27 C 0.08 3.78 5.17 86.44 0.45 4.23 16 28 H 0.10 1.18 7.41 -2.38 -0.02 1.16 16 29 H 0.08 1.45 7.15 -2.39 -0.02 1.44 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.42 4.97 7.83 -92.71 -0.73 4.24 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.10 3.06 7.77 -2.39 -0.02 3.04 16 40 H 0.05 1.73 8.02 -2.39 -0.02 1.71 16 41 H 0.06 2.76 8.06 -2.39 -0.02 2.74 16 42 H 0.04 2.32 7.86 -2.39 -0.02 2.30 16 43 H 0.38 20.99 7.05 -74.05 -0.52 20.46 16 44 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 45 H 0.02 1.19 7.41 -2.39 -0.02 1.17 16 46 H 0.06 3.09 6.57 -2.38 -0.02 3.07 16 Total: -1.00 -73.96 383.51 -2.91 -76.87 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -0.25 Total: 33.88 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 5.03 Total: -6.65 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -6.43 Total: -91.72 kcal Atomic # 8 Polarization: -57.42 SS G_CDS: -1.97 Total: -59.39 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -1.32 Total: -0.02 kcal Total: -73.96 -2.91 -76.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.271 kcal (2) G-P(sol) polarization free energy of solvation -73.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds