Wall clock time and date at job start Tue Mar 31 2020 21:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47014 * 2 1 4 4 C 1.50699 * 109.46847 * 120.00159 * 2 1 3 5 5 O 1.21279 * 119.99688 * 120.00134 * 4 2 1 6 6 N 1.34774 * 120.00529 * 299.99716 * 4 2 1 7 7 C 1.46496 * 120.00364 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47049 * 180.02562 * 7 6 4 9 9 C 1.50699 * 109.46835 * 179.97438 * 8 7 6 10 10 C 1.33391 * 125.20264 * 89.71727 * 9 8 7 11 11 C 1.38423 * 114.92159 * 180.26201 * 10 9 8 12 12 C 1.33385 * 114.92307 * 0.02562 * 11 10 9 13 13 S 1.75877 * 125.20583 * 270.02225 * 9 8 7 14 14 N 1.46904 * 109.47033 * 240.00470 * 2 1 3 15 15 C 1.47439 * 110.99840 * 55.42159 * 14 2 1 16 16 C 1.54328 * 107.23036 * 123.26099 * 15 14 2 17 17 C 1.55144 * 103.01527 * 22.28241 * 16 15 14 18 18 O 1.42890 * 110.99299 * 82.44215 * 17 16 15 19 19 C 1.50709 * 110.98791 * 206.21962 * 17 16 15 20 20 H 1.07997 * 119.99784 * 118.54601 * 19 17 16 21 21 C 1.37877 * 119.99519 * 298.54936 * 19 17 16 22 22 N 1.31507 * 120.00551 * 359.97438 * 21 19 17 23 23 Si 1.86808 * 119.99701 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46994 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47128 * 119.99451 * 23 21 19 26 26 H 1.48504 * 109.46758 * 239.99605 * 23 21 19 27 27 C 1.47845 * 110.99911 * 176.27055 * 14 2 1 28 28 H 1.09002 * 109.47051 * 293.86260 * 1 2 3 29 29 H 1.09001 * 109.47093 * 53.85364 * 1 2 3 30 30 H 1.08992 * 109.47445 * 173.85730 * 1 2 3 31 31 H 0.97008 * 119.99448 * 0.02562 * 6 4 2 32 32 H 1.08999 * 109.46954 * 60.00355 * 7 6 4 33 33 H 1.08998 * 109.46714 * 300.00232 * 7 6 4 34 34 H 1.08999 * 109.47111 * 60.00257 * 8 7 6 35 35 H 1.09002 * 109.46686 * 299.99569 * 8 7 6 36 36 H 1.08004 * 122.53982 * 0.24698 * 10 9 8 37 37 H 1.07998 * 122.53817 * 180.02562 * 11 10 9 38 38 H 1.07996 * 125.20457 * 180.02562 * 12 11 10 39 39 H 1.08997 * 109.89188 * 242.66014 * 15 14 2 40 40 H 1.08994 * 109.89348 * 3.85708 * 15 14 2 41 41 H 1.08997 * 110.70454 * 140.66124 * 16 15 14 42 42 H 1.09000 * 110.70685 * 263.72776 * 16 15 14 43 43 H 0.96696 * 114.00456 * 61.44979 * 18 17 16 44 44 H 0.96998 * 120.00197 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.37356 * 332.46412 * 27 14 2 46 46 H 1.08998 * 110.37548 * 94.80479 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1191 6 7 1.7067 -0.2501 2.4546 7 6 2.1955 -0.9404 3.6507 8 6 1.6849 -0.2196 4.9000 9 6 2.1871 -0.9301 6.1304 10 6 3.3357 -0.6667 6.7555 11 6 3.5901 -1.4546 7.8648 12 6 2.6484 -2.3583 8.1403 13 16 1.3523 -2.2387 6.9574 14 7 2.0197 -0.6924 -1.1995 15 6 1.4592 -0.0901 -2.4230 16 6 2.6488 0.3367 -3.3087 17 6 3.8062 -0.5598 -2.7950 18 8 3.7537 -1.8563 -3.3932 19 6 5.1431 0.0912 -3.0406 20 1 5.7840 0.3393 -2.2075 21 6 5.5476 0.3702 -4.3288 22 7 4.7673 0.0677 -5.3432 23 14 7.2050 1.1765 -4.6333 24 1 7.8866 1.4125 -3.3353 25 1 8.0412 0.2856 -5.4772 26 1 7.0043 2.4728 -5.3295 27 6 3.4948 -0.6349 -1.2794 28 1 -0.3633 0.4157 0.9398 29 1 -0.3633 0.6062 -0.8299 30 1 -0.3634 -1.0217 -0.1100 31 1 1.1488 0.5385 2.5436 32 1 3.2855 -0.9400 3.6505 33 1 1.8325 -1.9682 3.6507 34 1 0.5949 -0.2204 4.8999 35 1 2.0476 0.8083 4.9000 36 1 4.0158 0.1029 6.4213 37 1 4.4833 -1.3459 8.4620 38 1 2.6770 -3.0558 8.9642 39 1 0.8483 -0.8225 -2.9506 40 1 0.8575 0.7814 -2.1653 41 1 2.4402 0.1324 -4.3588 42 1 2.8802 1.3916 -3.1612 43 1 3.8467 -1.8495 -4.3557 44 1 5.0521 0.2637 -6.2495 45 1 3.8680 0.2540 -0.7708 46 1 3.9337 -1.5335 -0.8459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147924.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:20 Heat of formation + Delta-G solvation = -68.772323 kcal Electronic energy + Delta-G solvation = -26919.949069 eV Core-core repulsion = 23128.235874 eV Total energy + Delta-G solvation = -3791.713195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27269 -39.67153 -38.86491 -36.79551 -36.32192 -34.19894 -33.76763 -32.57859 -30.10177 -29.61314 -28.66003 -26.32299 -25.80809 -24.53458 -23.13977 -21.96589 -21.41622 -20.87081 -20.13676 -19.09212 -18.35442 -17.79970 -17.40479 -16.93034 -16.71272 -16.55119 -16.25368 -15.92580 -15.80987 -15.39583 -14.67703 -14.56404 -14.37153 -14.02632 -13.79593 -13.75088 -13.47369 -13.45505 -13.29760 -13.21626 -13.18572 -12.92915 -12.85943 -12.65130 -12.60871 -12.31754 -12.24635 -12.15473 -12.06235 -11.72072 -11.63285 -11.11107 -10.72451 -10.58493 -10.12761 -10.06010 -9.59845 -9.39613 -9.11897 -8.22317 -6.38410 0.04935 0.71303 1.08806 1.37058 1.40483 1.51368 1.67069 1.80411 2.11454 2.37053 3.01325 3.13625 3.70562 3.91351 3.93145 3.97879 4.02005 4.03811 4.14605 4.22466 4.25861 4.37493 4.42647 4.45263 4.66069 4.70793 4.71862 4.78297 4.87664 4.92209 4.96831 5.00465 5.10181 5.22784 5.26585 5.32129 5.37140 5.44207 5.48754 5.56470 5.58436 5.80715 5.95599 6.16327 6.26802 6.61532 6.66729 7.32313 7.33309 7.47472 8.83120 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.002241 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.292146 B =12489.099637 C =13475.572865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.053 3.947 3 H 0.078 0.922 4 C 0.514 3.486 5 O -0.567 6.567 6 N -0.715 5.715 7 C 0.130 3.870 8 C -0.047 4.047 9 C -0.185 4.185 10 C -0.144 4.144 11 C -0.146 4.146 12 C -0.217 4.217 13 S 0.083 5.917 14 N -0.521 5.521 15 C 0.053 3.947 16 C -0.134 4.134 17 C 0.230 3.770 18 O -0.590 6.590 19 C -0.562 4.562 20 H 0.047 0.953 21 C 0.032 3.968 22 N -0.908 5.908 23 Si 0.960 3.040 24 H -0.274 1.274 25 H -0.279 1.279 26 H -0.272 1.272 27 C 0.084 3.916 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.418 0.582 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.182 0.818 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.371 0.629 44 H 0.269 0.731 45 H 0.038 0.962 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.413 4.352 24.100 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.059 4.059 3 H 0.095 0.905 4 C 0.301 3.699 5 O -0.444 6.444 6 N -0.370 5.370 7 C 0.005 3.995 8 C -0.086 4.086 9 C -0.303 4.303 10 C -0.175 4.175 11 C -0.176 4.176 12 C -0.353 4.353 13 S 0.347 5.653 14 N -0.247 5.247 15 C -0.074 4.074 16 C -0.173 4.173 17 C 0.190 3.810 18 O -0.397 6.397 19 C -0.600 4.600 20 H 0.065 0.935 21 C -0.169 4.169 22 N -0.547 5.547 23 Si 0.785 3.215 24 H -0.199 1.199 25 H -0.205 1.205 26 H -0.198 1.198 27 C -0.044 4.044 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.256 0.744 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.200 0.800 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.219 0.781 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.554 2.175 24.319 27.455 hybrid contribution 2.741 2.011 -0.800 3.492 sum -9.813 4.186 23.519 25.826 Atomic orbital electron populations 1.21884 0.89300 1.03354 1.04607 1.21959 0.99160 0.95985 0.88775 0.90472 1.20876 0.79437 0.84172 0.85447 1.90721 1.38636 1.27936 1.87118 1.45737 1.54295 1.32726 1.04247 1.21236 0.98735 0.96071 0.83428 1.20248 1.02225 0.99272 0.86900 1.24422 1.00125 1.02876 1.02879 1.20461 0.97363 1.02761 0.96875 1.20465 1.01405 0.96793 0.98903 1.25945 0.98332 1.05975 1.05004 1.84390 1.24205 1.33692 1.23034 1.63362 1.06631 1.53097 1.01564 1.22836 0.96708 0.97967 0.89882 1.23040 0.95825 0.98913 0.99552 1.19868 0.92321 0.80389 0.88409 1.86175 1.96270 1.31949 1.25347 1.21785 1.04272 1.40999 0.92979 0.93516 1.25679 1.00512 0.95096 0.95611 1.69822 1.37794 1.47866 0.99229 0.85487 0.79671 0.78324 0.77977 1.19909 1.20470 1.19757 1.22634 0.87304 0.98363 0.96086 0.88378 0.90010 0.92483 0.74415 0.93083 0.93045 0.88285 0.87261 0.83184 0.82556 0.80038 0.91474 0.90206 0.92156 0.93218 0.78099 0.92115 0.94430 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.80 71.98 0.63 -2.09 16 2 C 0.05 1.57 2.16 44.17 0.10 1.67 16 3 H 0.08 2.08 8.00 -2.39 -0.02 2.06 16 4 C 0.51 16.25 6.91 87.66 0.61 16.85 16 5 O -0.57 -24.56 14.62 -3.03 -0.04 -24.61 16 6 N -0.72 -14.64 5.41 -463.07 -2.50 -17.14 16 7 C 0.13 2.64 5.66 86.38 0.49 3.13 16 8 C -0.05 -0.59 5.82 29.85 0.17 -0.42 16 9 C -0.19 -2.90 5.76 24.59 0.14 -2.76 16 10 C -0.14 -2.22 10.05 21.22 0.21 -2.00 16 11 C -0.15 -2.07 10.18 21.22 0.22 -1.85 16 12 C -0.22 -3.02 11.23 66.72 0.75 -2.27 16 13 S 0.08 1.30 23.33 -56.49 -1.32 -0.02 16 14 N -0.52 -21.10 4.79 -864.75 -4.14 -25.24 16 15 C 0.05 2.00 6.20 86.65 0.54 2.54 16 16 C -0.13 -6.26 5.37 31.78 0.17 -6.09 16 17 C 0.23 12.26 0.87 -10.15 -0.01 12.26 16 18 O -0.59 -33.79 13.16 -148.98 -1.96 -35.75 16 19 C -0.56 -31.93 8.27 25.60 0.21 -31.72 16 20 H 0.05 2.69 7.79 -2.91 -0.02 2.67 16 21 C 0.03 1.74 5.29 84.66 0.45 2.19 16 22 N -0.91 -49.60 10.75 21.45 0.23 -49.37 16 23 Si 0.96 43.32 29.54 68.60 2.03 45.34 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 27 C 0.08 4.10 4.70 86.77 0.41 4.51 16 28 H 0.10 1.20 7.40 -2.39 -0.02 1.18 16 29 H 0.08 1.49 6.45 -2.39 -0.02 1.47 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.42 4.99 7.82 -92.70 -0.73 4.27 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.08 2.38 6.04 -2.39 -0.01 2.36 16 41 H 0.06 2.99 7.53 -2.39 -0.02 2.98 16 42 H 0.05 2.32 8.04 -2.39 -0.02 2.30 16 43 H 0.37 21.07 7.56 -74.06 -0.56 20.51 16 44 H 0.27 13.89 8.31 -92.71 -0.77 13.11 16 45 H 0.04 1.79 7.60 -2.39 -0.02 1.77 16 46 H 0.05 2.63 7.13 -2.39 -0.02 2.61 16 Total: -1.00 -73.73 382.87 -2.91 -76.64 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -0.28 Total: 36.22 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 5.08 Total: -6.07 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -6.41 Total: -91.75 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -2.00 Total: -60.36 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.32 Total: -0.02 kcal Total: -73.73 -2.91 -76.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147924.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.870 kcal (2) G-P(sol) polarization free energy of solvation -73.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds