Wall clock time and date at job start Tue Mar 31 2020 20:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47148 * 2 1 4 4 C 1.52996 * 109.47435 * 120.00540 * 2 1 3 5 5 C 1.50694 * 109.47032 * 294.99791 * 4 2 1 6 6 C 1.38361 * 119.84621 * 270.22890 * 5 4 2 7 7 C 1.37951 * 120.15117 * 180.28024 * 6 5 4 8 8 C 1.39638 * 119.84341 * 359.49261 * 7 6 5 9 9 C 1.43197 * 120.14804 * 180.27894 * 8 7 6 10 10 N 7.49465 * 80.01257 * 67.60278 * 2 1 3 11 11 C 1.39630 * 119.70158 * 0.25162 * 8 7 6 12 12 C 1.37952 * 119.84316 * 0.02562 * 11 8 7 13 13 C 1.50708 * 109.46725 * 240.00550 * 2 1 3 14 14 O 1.21290 * 119.99551 * 239.99690 * 13 2 1 15 15 N 1.34776 * 119.99882 * 59.99577 * 13 2 1 16 16 C 1.40163 * 119.99789 * 179.97438 * 15 13 2 17 17 C 1.40407 * 125.97061 * 359.72219 * 16 15 13 18 18 C 1.35242 * 107.86523 * 179.82814 * 17 16 15 19 19 N 1.34971 * 107.86071 * 0.42735 * 18 17 16 20 20 C 1.46499 * 125.97771 * 179.69495 * 19 18 17 21 21 C 1.50700 * 109.46926 * 125.01619 * 20 19 18 22 22 H 1.07999 * 120.00202 * 359.97438 * 21 20 19 23 23 C 1.37886 * 119.99662 * 180.02562 * 21 20 19 24 24 N 1.31510 * 119.99650 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99850 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47352 * 59.99521 * 25 23 21 27 27 H 1.48498 * 109.46969 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47236 * 299.99665 * 25 23 21 29 29 N 1.31212 * 125.97291 * 180.02562 * 16 15 13 30 30 H 1.09002 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46703 * 299.99082 * 1 2 3 32 32 H 1.08995 * 109.47736 * 59.99274 * 1 2 3 33 33 H 1.09002 * 109.46926 * 174.99822 * 4 2 1 34 34 H 1.08999 * 109.46996 * 54.99823 * 4 2 1 35 35 H 1.07995 * 119.93141 * 0.02894 * 6 5 4 36 36 H 1.08002 * 120.08138 * 179.77464 * 7 6 5 37 37 H 1.07996 * 120.07885 * 180.02562 * 11 8 7 38 38 H 1.07996 * 119.92083 * 180.02562 * 12 11 8 39 39 H 0.96996 * 120.00182 * 0.02562 * 15 13 2 40 40 H 1.08004 * 126.07076 * 359.97209 * 17 16 15 41 41 H 1.07996 * 126.07084 * 180.16425 * 18 17 16 42 42 H 1.08992 * 109.46956 * 245.01740 * 20 19 18 43 43 H 1.09005 * 109.46962 * 5.01896 * 20 19 18 44 44 H 0.96999 * 119.99491 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6415 0.0568 2.4765 6 6 2.4826 1.0362 2.9741 7 6 2.1266 1.7484 4.1007 8 6 0.9094 1.4863 4.7327 9 6 0.5307 2.2258 5.8990 10 7 0.2302 2.8124 6.8243 11 6 0.0629 0.5002 4.2220 12 6 0.4341 -0.2084 3.0980 13 6 2.0322 -0.7103 -1.2306 14 8 2.7296 -1.6965 -1.1194 15 7 1.7065 -0.2498 -2.4547 16 6 2.1741 -0.9101 -3.5992 17 6 2.9897 -2.0529 -3.6166 18 6 3.2154 -2.3818 -4.9089 19 7 2.5775 -1.4791 -5.6833 20 6 2.5644 -1.4582 -7.1481 21 6 1.1391 -1.4578 -7.6377 22 1 0.3246 -1.4721 -6.9287 23 6 0.8751 -1.4403 -8.9909 24 7 1.8670 -1.4233 -9.8542 25 14 -0.8915 -1.4391 -9.5978 26 1 -1.5921 -0.2364 -9.0799 27 1 -0.9048 -1.4180 -11.0826 28 1 -1.5822 -2.6612 -9.1134 29 7 1.9307 -0.5652 -4.8415 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 3.1264 -0.7995 1.2054 34 1 1.6054 -1.7199 1.2950 35 1 3.4219 1.2409 2.4820 36 1 2.7858 2.5101 4.4903 37 1 -0.8801 0.2927 4.7057 38 1 -0.2198 -0.9710 2.7017 39 1 1.1491 0.5391 -2.5435 40 1 3.3676 -2.5777 -2.7516 41 1 3.8053 -3.2159 -5.2590 42 1 3.0708 -0.5608 -7.5032 43 1 3.0790 -2.3405 -7.5286 44 1 1.6812 -1.4106 -10.8061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593981363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:01 Heat of formation + Delta-G solvation = 70.838094 kcal Electronic energy + Delta-G solvation = -26656.160072 eV Core-core repulsion = 22767.349639 eV Total energy + Delta-G solvation = -3888.810434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.20116 -41.00268 -40.22245 -37.70656 -36.23869 -35.84135 -35.22345 -32.89834 -32.03943 -31.83883 -30.90308 -28.60830 -28.00584 -25.79912 -24.66809 -23.58320 -23.27419 -22.20088 -21.36311 -20.48300 -19.83744 -18.67312 -18.30229 -17.94937 -17.03647 -16.77037 -16.40680 -16.22759 -16.08306 -15.69423 -15.41293 -15.32770 -15.00821 -14.71727 -14.47808 -14.31010 -14.22097 -14.03991 -13.79330 -13.78897 -13.68904 -13.58620 -13.05023 -12.97667 -12.87576 -12.69999 -12.27292 -12.19655 -12.14205 -12.02260 -11.98891 -11.73863 -11.55488 -11.35352 -10.71897 -10.67975 -9.86352 -9.71682 -9.64673 -9.07983 -8.31736 -6.46031 -0.17350 0.49732 1.00537 1.38903 1.41204 1.43194 1.50895 1.53344 1.62828 1.95431 2.29525 2.32636 2.47620 2.91125 2.95153 3.00102 3.52079 3.89865 3.92847 3.98479 4.06402 4.13751 4.21145 4.31010 4.44754 4.52536 4.55345 4.82641 4.85199 4.89120 4.92940 4.95435 4.96115 5.02902 5.06116 5.18214 5.19226 5.33160 5.35043 5.38804 5.43339 5.57678 5.71685 5.81589 5.95467 5.99533 6.28380 6.35056 6.46016 6.66130 7.06516 7.19963 7.23990 8.75531 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.001736 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.152894 B =16128.677861 C =16804.315625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.086 4.086 3 H 0.127 0.873 4 C -0.065 4.065 5 C -0.043 4.043 6 C -0.117 4.117 7 C -0.065 4.065 8 C -0.051 4.051 9 C 0.279 3.721 10 N -0.475 5.475 11 C -0.065 4.065 12 C -0.115 4.115 13 C 0.523 3.477 14 O -0.547 6.547 15 N -0.625 5.625 16 C 0.265 3.735 17 C -0.293 4.293 18 C 0.053 3.947 19 N -0.345 5.345 20 C 0.273 3.727 21 C -0.549 4.549 22 H 0.053 0.947 23 C 0.019 3.981 24 N -0.920 5.920 25 Si 0.971 3.029 26 H -0.273 1.273 27 H -0.274 1.274 28 H -0.270 1.270 29 N -0.348 5.348 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.423 0.577 40 H 0.170 0.830 41 H 0.199 0.801 42 H 0.021 0.979 43 H 0.057 0.943 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 2.989 25.941 26.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 H 0.145 0.855 4 C -0.102 4.102 5 C -0.044 4.044 6 C -0.135 4.135 7 C -0.085 4.085 8 C -0.054 4.054 9 C -0.035 4.035 10 N -0.151 5.151 11 C -0.085 4.085 12 C -0.133 4.133 13 C 0.311 3.689 14 O -0.423 6.423 15 N -0.275 5.275 16 C 0.011 3.989 17 C -0.324 4.324 18 C -0.095 4.095 19 N -0.127 5.127 20 C 0.154 3.846 21 C -0.587 4.587 22 H 0.071 0.929 23 C -0.181 4.181 24 N -0.559 5.559 25 Si 0.795 3.205 26 H -0.198 1.198 27 H -0.199 1.199 28 H -0.195 1.195 29 N -0.179 5.179 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.168 0.832 39 H 0.261 0.739 40 H 0.187 0.813 41 H 0.216 0.784 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.213 4.039 26.397 26.731 hybrid contribution -0.357 -0.350 -0.683 0.846 sum -1.569 3.690 25.714 26.024 Atomic orbital electron populations 1.21970 0.91234 1.03381 1.04354 1.21275 0.98801 1.01462 0.89150 0.85477 1.20461 1.02514 0.98322 0.88925 1.20093 0.94083 0.94918 0.95344 1.21225 1.00867 0.95467 0.95947 1.21331 0.93984 0.98715 0.94482 1.16125 0.97993 0.99194 0.92109 1.26105 0.92276 0.92381 0.92703 1.81296 1.09729 1.11240 1.12845 1.21337 0.98988 0.92814 0.95357 1.21242 0.96506 1.00454 0.95090 1.21564 0.79045 0.84280 0.84007 1.90626 1.38075 1.27110 1.86445 1.42748 1.51709 1.30963 1.02052 1.19527 0.97579 0.94649 0.87164 1.21732 1.11123 1.02309 0.97245 1.23176 0.98748 0.96565 0.91032 1.48821 1.36652 1.19883 1.07345 1.19313 0.98085 0.98024 0.69178 1.21384 0.92045 1.52928 0.92354 0.92866 1.25735 1.02253 0.93871 0.96282 1.69988 1.33192 1.49850 1.02862 0.85410 0.78867 0.78933 0.77283 1.19785 1.19894 1.19466 1.77249 1.23651 1.17930 0.99106 0.92075 0.88801 0.91606 0.89838 0.89881 0.83326 0.83840 0.83731 0.83189 0.73918 0.81325 0.78450 0.96139 0.92493 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.65 71.98 0.62 -0.74 16 2 C -0.09 -0.97 2.71 -11.54 -0.03 -1.00 16 3 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.06 -0.65 4.18 29.85 0.12 -0.53 16 5 C -0.04 -0.31 4.72 -19.81 -0.09 -0.41 16 6 C -0.12 -0.75 9.68 22.23 0.22 -0.53 16 7 C -0.06 -0.47 9.76 22.54 0.22 -0.25 16 8 C -0.05 -0.48 5.73 -21.36 -0.12 -0.60 16 9 C 0.28 4.19 15.33 88.33 1.35 5.55 16 10 N -0.47 -9.97 18.54 19.00 0.35 -9.62 16 11 C -0.06 -0.44 9.76 22.54 0.22 -0.22 16 12 C -0.12 -0.69 7.93 22.23 0.18 -0.51 16 13 C 0.52 11.60 7.12 87.66 0.62 12.22 16 14 O -0.55 -15.81 13.05 -3.06 -0.04 -15.85 16 15 N -0.63 -16.50 5.34 -307.51 -1.64 -18.14 16 16 C 0.27 9.95 8.11 133.32 1.08 11.03 16 17 C -0.29 -10.86 9.61 22.11 0.21 -10.64 16 18 C 0.05 2.04 11.44 83.52 0.96 2.99 16 19 N -0.35 -15.85 3.67 -351.85 -1.29 -17.14 16 20 C 0.27 13.97 6.26 85.63 0.54 14.51 16 21 C -0.55 -30.57 9.24 25.60 0.24 -30.33 16 22 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 23 C 0.02 1.04 5.46 84.66 0.46 1.50 16 24 N -0.92 -51.60 13.29 21.45 0.28 -51.32 16 25 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 29 N -0.35 -15.66 12.42 -54.45 -0.68 -16.34 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.50 6.26 -2.38 -0.01 0.49 16 32 H 0.06 0.61 7.56 -2.39 -0.02 0.59 16 33 H 0.08 0.99 7.90 -2.39 -0.02 0.97 16 34 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 35 H 0.15 0.54 8.06 -2.91 -0.02 0.52 16 36 H 0.14 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.14 0.60 8.06 -2.91 -0.02 0.58 16 38 H 0.15 0.47 8.03 -2.91 -0.02 0.45 16 39 H 0.42 8.82 8.24 -92.71 -0.76 8.05 16 40 H 0.17 5.93 5.92 -2.91 -0.02 5.91 16 41 H 0.20 5.98 8.06 -2.91 -0.02 5.95 16 42 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 2.85 8.07 -2.38 -0.02 2.84 16 44 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -73.34 385.69 6.09 -67.26 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.28 Total: 14.21 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 6.79 Total: 2.04 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -2.97 Total: -112.56 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.04 Total: -15.85 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -73.34 6.09 -67.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593981363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.094 kcal (2) G-P(sol) polarization free energy of solvation -73.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds