Wall clock time and date at job start Tue Mar 31 2020 21:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46836 * 2 1 4 4 C 1.53000 * 109.47172 * 119.99176 * 2 1 3 5 5 N 1.46499 * 109.47564 * 175.00020 * 4 2 1 6 6 S 1.65592 * 120.00421 * 163.89499 * 5 4 2 7 7 O 1.42106 * 106.40113 * 312.97954 * 6 5 4 8 8 O 1.42098 * 106.40448 * 180.02562 * 6 5 4 9 9 C 1.76207 * 107.21638 * 66.51477 * 6 5 4 10 10 C 1.37645 * 120.12503 * 111.80773 * 9 6 5 11 11 C 1.38607 * 120.24634 * 179.97438 * 10 9 6 12 12 C 1.38661 * 120.50426 * 0.02562 * 11 10 9 13 13 C 1.37599 * 120.24578 * 0.02562 * 12 11 10 14 14 C 1.40695 * 120.12869 * 291.53583 * 9 6 5 15 15 C 1.41393 * 120.24399 * 359.97438 * 14 9 6 16 16 H 1.08005 * 120.00209 * 327.77767 * 15 14 9 17 17 C 1.39937 * 120.00184 * 147.78305 * 15 14 9 18 18 N 1.30825 * 120.00635 * 167.20785 * 17 15 14 19 19 Si 1.86804 * 119.99897 * 347.21333 * 17 15 14 20 20 H 1.48493 * 109.47638 * 93.13333 * 19 17 15 21 21 H 1.48506 * 109.47122 * 213.13349 * 19 17 15 22 22 H 1.48504 * 109.46960 * 333.12867 * 19 17 15 23 23 N 1.46891 * 109.47349 * 239.99508 * 2 1 3 24 24 C 1.48537 * 111.00000 * 309.26813 * 23 2 1 25 25 C 1.54944 * 103.22587 * 159.72087 * 24 23 2 26 26 C 1.54590 * 102.92058 * 322.58752 * 25 24 23 27 27 C 1.47898 * 111.00125 * 66.66579 * 23 2 1 28 28 H 1.08999 * 109.46999 * 67.36942 * 1 2 3 29 29 H 1.09005 * 109.47048 * 187.36879 * 1 2 3 30 30 H 1.09000 * 109.47380 * 307.36907 * 1 2 3 31 31 H 1.09003 * 109.46880 * 55.00186 * 4 2 1 32 32 H 1.09005 * 109.47509 * 295.00826 * 4 2 1 33 33 H 0.97001 * 119.99587 * 343.90037 * 5 4 2 34 34 H 1.08001 * 119.87311 * 0.02562 * 10 9 6 35 35 H 1.08004 * 119.74855 * 179.97438 * 11 10 9 36 36 H 1.07996 * 119.87782 * 180.02562 * 12 11 10 37 37 H 1.07992 * 120.12551 * 179.97438 * 13 12 11 38 38 H 0.96998 * 120.00744 * 180.02562 * 18 17 15 39 39 H 1.09000 * 110.66813 * 278.15389 * 24 23 2 40 40 H 1.08999 * 110.66672 * 41.28821 * 24 23 2 41 41 H 1.08996 * 110.71890 * 204.22823 * 25 24 23 42 42 H 1.08994 * 110.72011 * 80.94370 * 25 24 23 43 43 H 1.09004 * 110.30907 * 263.04396 * 26 25 24 44 44 H 1.08993 * 110.30821 * 140.87975 * 26 25 24 45 45 H 1.09001 * 109.91828 * 333.50843 * 27 23 2 46 46 H 1.09000 * 109.92238 * 94.80287 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5001 -0.8262 1.1908 6 16 4.3596 -1.1904 2.5585 7 8 3.8553 -0.3477 3.5856 8 8 5.7281 -1.2180 2.1770 9 6 3.9380 -2.8391 3.0159 10 6 4.8741 -3.8436 2.9192 11 6 4.5453 -5.1412 3.2788 12 6 3.2725 -5.4431 3.7387 13 6 2.3206 -4.4550 3.8425 14 6 2.6451 -3.1327 3.4867 15 6 1.6772 -2.1077 3.5961 16 1 1.9828 -1.0995 3.8342 17 6 0.3233 -2.3996 3.3962 18 7 -0.5911 -1.5283 3.7371 19 14 -0.1785 -4.0335 2.6425 20 1 -0.4511 -5.0145 3.7235 21 1 -1.4034 -3.8458 1.8241 22 1 0.9200 -4.5392 1.7805 23 7 2.0197 -0.6925 -1.1993 24 6 1.3697 -2.0195 -1.3504 25 6 1.5758 -2.3465 -2.8509 26 6 1.4039 -0.9692 -3.5315 27 6 1.6808 0.0643 -2.4239 28 1 -0.3633 0.3954 -0.9485 29 1 -0.3633 -1.0192 0.1318 30 1 -0.3634 0.6237 0.8167 31 1 1.6054 -1.7196 1.2953 32 1 1.7516 -0.1581 2.1371 33 1 3.9633 -0.6825 0.3507 34 1 5.8686 -3.6196 2.5626 35 1 5.2860 -5.9233 3.1993 36 1 3.0275 -6.4576 4.0165 37 1 1.3298 -4.6924 4.2006 38 1 -1.5296 -1.7307 3.5988 39 1 1.8622 -2.7629 -0.7235 40 1 0.3077 -1.9570 -1.1127 41 1 0.8176 -3.0470 -3.2006 42 1 2.5768 -2.7408 -3.0256 43 1 0.3870 -0.8573 -3.9076 44 1 2.1227 -0.8559 -4.3430 45 1 0.7918 0.6709 -2.2515 46 1 2.5179 0.7007 -2.7108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601303818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:49 Heat of formation + Delta-G solvation = -47.800213 kcal Electronic energy + Delta-G solvation = -29525.322418 eV Core-core repulsion = 25734.518641 eV Total energy + Delta-G solvation = -3790.803776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.38123 -37.91754 -36.31707 -35.22992 -34.81636 -33.83917 -32.23160 -30.72207 -30.11059 -28.91563 -28.57349 -25.66782 -25.09256 -22.49204 -22.00746 -21.17817 -20.82627 -19.37848 -18.42122 -17.72847 -17.03243 -16.52819 -16.05634 -15.72562 -15.49062 -15.23393 -14.43860 -14.22997 -14.09747 -13.87316 -13.63386 -13.47672 -13.03887 -12.95895 -12.61349 -12.43059 -12.22557 -11.97940 -11.88554 -11.58802 -11.39609 -11.30737 -11.26934 -11.21536 -11.03773 -11.01660 -10.98146 -10.83902 -10.67672 -10.56652 -10.37230 -10.11497 -9.95709 -9.52551 -9.27327 -8.55694 -8.23964 -8.17654 -7.83015 -7.20605 -4.87089 1.57611 2.07907 2.50567 2.89359 2.97459 3.08527 3.71714 3.98207 4.17399 4.28351 4.70006 4.70970 4.75659 4.96574 5.11216 5.15112 5.32842 5.38943 5.50112 5.54024 5.62433 5.70855 5.78338 5.83512 5.85532 5.91166 5.92186 5.98479 6.05432 6.19078 6.20405 6.21304 6.38429 6.40212 6.47982 6.56014 6.62607 6.78797 6.94314 7.07994 7.09739 7.24436 7.26667 7.42432 7.55066 7.82218 7.91631 8.15449 8.31775 8.52060 9.75881 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010415 B = 0.006164 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.725713 B = 4541.165834 C = 5336.180290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.061 3.939 3 H 0.085 0.915 4 C 0.140 3.860 5 N -1.111 6.111 6 S 2.707 3.293 7 O -0.971 6.971 8 O -0.999 6.999 9 C -0.766 4.766 10 C 0.018 3.982 11 C -0.257 4.257 12 C -0.045 4.045 13 C -0.235 4.235 14 C 0.163 3.837 15 C -0.465 4.465 16 H 0.137 0.863 17 C 0.092 3.908 18 N -0.776 5.776 19 Si 0.894 3.106 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.238 1.238 23 N -0.507 5.507 24 C 0.023 3.977 25 C -0.124 4.124 26 C -0.129 4.129 27 C 0.030 3.970 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.413 0.587 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.290 0.710 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.047 0.953 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 -0.023 -11.321 11.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.050 4.050 3 H 0.103 0.897 4 C 0.014 3.986 5 N -0.869 5.869 6 S 2.803 3.197 7 O -0.961 6.961 8 O -0.990 6.990 9 C -0.859 4.859 10 C -0.002 4.002 11 C -0.277 4.277 12 C -0.064 4.064 13 C -0.255 4.255 14 C 0.158 3.842 15 C -0.492 4.492 16 H 0.155 0.845 17 C -0.131 4.131 18 N -0.398 5.398 19 Si 0.720 3.280 20 H -0.193 1.193 21 H -0.213 1.213 22 H -0.161 1.161 23 N -0.231 5.231 24 C -0.105 4.105 25 C -0.162 4.162 26 C -0.167 4.167 27 C -0.098 4.098 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.248 0.752 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.973 0.671 -10.616 10.681 hybrid contribution -1.607 -1.444 -0.631 2.251 sum -2.580 -0.773 -11.246 11.564 Atomic orbital electron populations 1.22380 0.96854 1.03005 1.01981 1.22161 0.93185 0.98652 0.90961 0.89700 1.21683 0.78922 1.01447 0.96546 1.55288 1.16194 1.88120 1.27304 1.00878 0.71498 0.74635 0.72732 1.93497 1.80329 1.66193 1.56051 1.93454 1.33420 1.88501 1.83584 1.30028 1.05000 1.21885 1.29010 1.20406 0.96459 0.92298 0.91064 1.20516 0.97124 0.96125 1.13944 1.20832 0.93675 0.97212 0.94677 1.21215 0.99164 0.94693 1.10418 1.17119 0.90112 0.92167 0.84768 1.20528 0.90278 0.99708 1.38651 0.84532 1.26147 0.96092 0.98182 0.92662 1.69653 1.02779 1.35615 1.31737 0.86590 0.78801 0.81904 0.80690 1.19307 1.21319 1.16105 1.64902 1.54233 1.02618 1.01306 1.23400 0.98355 0.92262 0.96444 1.22476 1.02126 0.96565 0.95017 1.22369 1.01217 0.95149 0.97984 1.22897 1.00033 0.96511 0.90344 0.92678 0.91860 0.91109 0.90808 0.88754 0.75235 0.86821 0.88139 0.88368 0.87751 0.89885 0.89494 0.92820 0.91504 0.90811 0.91980 0.91356 0.93440 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.24 37.16 0.31 -2.24 16 2 C 0.06 0.90 2.53 -67.72 -0.17 0.73 16 3 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 4 C 0.14 2.57 3.70 -4.04 -0.01 2.55 16 5 N -1.11 -20.39 5.91 -10.61 -0.06 -20.46 16 6 S 2.71 58.61 5.44 -107.50 -0.58 58.03 16 7 O -0.97 -23.76 14.88 -57.17 -0.85 -24.61 16 8 O -1.00 -22.52 16.97 -57.17 -0.97 -23.49 16 9 C -0.77 -17.52 5.97 -38.87 -0.23 -17.75 16 10 C 0.02 0.38 9.53 -39.66 -0.38 0.00 16 11 C -0.26 -5.22 10.05 -39.29 -0.39 -5.61 16 12 C -0.05 -0.94 10.02 -39.66 -0.40 -1.33 16 13 C -0.24 -5.36 7.02 -38.87 -0.27 -5.63 16 14 C 0.16 3.90 5.08 -106.83 -0.54 3.36 16 15 C -0.46 -11.27 5.32 -37.75 -0.20 -11.47 16 16 H 0.14 3.59 4.52 -52.48 -0.24 3.35 16 17 C 0.09 2.11 4.69 -17.34 -0.08 2.03 16 18 N -0.78 -17.83 13.93 55.55 0.77 -17.06 16 19 Si 0.89 18.33 24.17 -169.99 -4.11 14.22 16 20 H -0.27 -5.46 6.69 56.52 0.38 -5.08 16 21 H -0.29 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.24 -4.99 6.70 56.52 0.38 -4.61 16 23 N -0.51 -6.90 4.50 -222.50 -1.00 -7.90 16 24 C 0.02 0.31 5.54 -1.89 -0.01 0.30 16 25 C -0.12 -1.38 7.06 -24.87 -0.18 -1.55 16 26 C -0.13 -1.28 6.93 -25.38 -0.18 -1.45 16 27 C 0.03 0.34 6.45 -2.76 -0.02 0.32 16 28 H 0.05 0.66 6.17 -51.93 -0.32 0.34 16 29 H 0.06 0.94 6.38 -51.93 -0.33 0.61 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.44 5.22 -51.93 -0.27 1.17 16 32 H 0.09 1.93 6.18 -51.93 -0.32 1.61 16 33 H 0.41 6.79 8.08 -34.46 -0.28 6.51 16 34 H 0.11 2.25 7.32 -52.49 -0.38 1.87 16 35 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 36 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.10 2.32 4.57 -52.49 -0.24 2.08 16 38 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 39 H 0.09 1.34 7.88 -51.93 -0.41 0.93 16 40 H 0.05 0.74 5.49 -51.93 -0.29 0.45 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.51 5.90 -51.93 -0.31 0.21 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -27.79 353.53 -10.61 -38.39 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -6.37 Total: 15.32 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: -2.76 Total: -37.76 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.29 Total: -45.42 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -1.82 Total: -48.11 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -4.11 Total: 14.22 kcal Atomic # 16 Polarization: 58.61 SS G_CDS: -0.58 Total: 58.03 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.79 -10.61 -38.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601303818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.407 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds