Wall clock time and date at job start Tue Mar 31 2020 21:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46836 * 2 1 4 4 C 1.53000 * 109.47172 * 119.99176 * 2 1 3 5 5 N 1.46499 * 109.47564 * 175.00020 * 4 2 1 6 6 S 1.65592 * 120.00421 * 163.89499 * 5 4 2 7 7 O 1.42106 * 106.40113 * 312.97954 * 6 5 4 8 8 O 1.42098 * 106.40448 * 180.02562 * 6 5 4 9 9 C 1.76207 * 107.21638 * 66.51477 * 6 5 4 10 10 C 1.37645 * 120.12503 * 111.80773 * 9 6 5 11 11 C 1.38607 * 120.24634 * 179.97438 * 10 9 6 12 12 C 1.38661 * 120.50426 * 0.02562 * 11 10 9 13 13 C 1.37599 * 120.24578 * 0.02562 * 12 11 10 14 14 C 1.40695 * 120.12869 * 291.53583 * 9 6 5 15 15 C 1.41393 * 120.24399 * 359.97438 * 14 9 6 16 16 H 1.08005 * 120.00209 * 327.77767 * 15 14 9 17 17 C 1.39937 * 120.00184 * 147.78305 * 15 14 9 18 18 N 1.30825 * 120.00635 * 167.20785 * 17 15 14 19 19 Si 1.86804 * 119.99897 * 347.21333 * 17 15 14 20 20 H 1.48493 * 109.47638 * 93.13333 * 19 17 15 21 21 H 1.48506 * 109.47122 * 213.13349 * 19 17 15 22 22 H 1.48504 * 109.46960 * 333.12867 * 19 17 15 23 23 N 1.46891 * 109.47349 * 239.99508 * 2 1 3 24 24 C 1.48537 * 111.00000 * 309.26813 * 23 2 1 25 25 C 1.54944 * 103.22587 * 159.72087 * 24 23 2 26 26 C 1.54590 * 102.92058 * 322.58752 * 25 24 23 27 27 C 1.47898 * 111.00125 * 66.66579 * 23 2 1 28 28 H 1.08999 * 109.46999 * 67.36942 * 1 2 3 29 29 H 1.09005 * 109.47048 * 187.36879 * 1 2 3 30 30 H 1.09000 * 109.47380 * 307.36907 * 1 2 3 31 31 H 1.09003 * 109.46880 * 55.00186 * 4 2 1 32 32 H 1.09005 * 109.47509 * 295.00826 * 4 2 1 33 33 H 0.97001 * 119.99587 * 343.90037 * 5 4 2 34 34 H 1.08001 * 119.87311 * 0.02562 * 10 9 6 35 35 H 1.08004 * 119.74855 * 179.97438 * 11 10 9 36 36 H 1.07996 * 119.87782 * 180.02562 * 12 11 10 37 37 H 1.07992 * 120.12551 * 179.97438 * 13 12 11 38 38 H 0.96998 * 120.00744 * 180.02562 * 18 17 15 39 39 H 1.09000 * 110.66813 * 278.15389 * 24 23 2 40 40 H 1.08999 * 110.66672 * 41.28821 * 24 23 2 41 41 H 1.08996 * 110.71890 * 204.22823 * 25 24 23 42 42 H 1.08994 * 110.72011 * 80.94370 * 25 24 23 43 43 H 1.09004 * 110.30907 * 263.04396 * 26 25 24 44 44 H 1.08993 * 110.30821 * 140.87975 * 26 25 24 45 45 H 1.09001 * 109.91828 * 333.50843 * 27 23 2 46 46 H 1.09000 * 109.92238 * 94.80287 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5001 -0.8262 1.1908 6 16 4.3596 -1.1904 2.5585 7 8 3.8553 -0.3477 3.5856 8 8 5.7281 -1.2180 2.1770 9 6 3.9380 -2.8391 3.0159 10 6 4.8741 -3.8436 2.9192 11 6 4.5453 -5.1412 3.2788 12 6 3.2725 -5.4431 3.7387 13 6 2.3206 -4.4550 3.8425 14 6 2.6451 -3.1327 3.4867 15 6 1.6772 -2.1077 3.5961 16 1 1.9828 -1.0995 3.8342 17 6 0.3233 -2.3996 3.3962 18 7 -0.5911 -1.5283 3.7371 19 14 -0.1785 -4.0335 2.6425 20 1 -0.4511 -5.0145 3.7235 21 1 -1.4034 -3.8458 1.8241 22 1 0.9200 -4.5392 1.7805 23 7 2.0197 -0.6925 -1.1993 24 6 1.3697 -2.0195 -1.3504 25 6 1.5758 -2.3465 -2.8509 26 6 1.4039 -0.9692 -3.5315 27 6 1.6808 0.0643 -2.4239 28 1 -0.3633 0.3954 -0.9485 29 1 -0.3633 -1.0192 0.1318 30 1 -0.3634 0.6237 0.8167 31 1 1.6054 -1.7196 1.2953 32 1 1.7516 -0.1581 2.1371 33 1 3.9633 -0.6825 0.3507 34 1 5.8686 -3.6196 2.5626 35 1 5.2860 -5.9233 3.1993 36 1 3.0275 -6.4576 4.0165 37 1 1.3298 -4.6924 4.2006 38 1 -1.5296 -1.7307 3.5988 39 1 1.8622 -2.7629 -0.7235 40 1 0.3077 -1.9570 -1.1127 41 1 0.8176 -3.0470 -3.2006 42 1 2.5768 -2.7408 -3.0256 43 1 0.3870 -0.8573 -3.9076 44 1 2.1227 -0.8559 -4.3430 45 1 0.7918 0.6709 -2.2515 46 1 2.5179 0.7007 -2.7108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601303818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:48 Heat of formation + Delta-G solvation = -67.574046 kcal Electronic energy + Delta-G solvation = -29526.179875 eV Core-core repulsion = 25734.518641 eV Total energy + Delta-G solvation = -3791.661234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.45886 -39.61044 -38.11223 -36.70180 -36.54802 -35.52969 -33.51104 -32.44345 -31.80616 -29.91266 -29.57530 -27.32715 -26.53870 -23.89529 -23.45057 -22.89102 -21.69143 -20.55944 -20.12454 -19.48398 -18.70198 -18.05408 -17.39304 -17.12012 -16.92354 -16.60960 -16.05184 -15.87964 -15.43479 -15.29798 -15.05436 -14.72528 -14.65022 -14.34064 -14.07692 -13.89115 -13.62791 -13.50438 -13.10113 -13.01315 -12.99333 -12.91321 -12.71374 -12.70748 -12.58645 -12.40453 -12.22959 -12.12276 -11.95495 -11.92449 -11.70390 -11.54169 -11.25758 -11.25445 -10.98168 -10.13647 -9.92557 -9.56040 -9.25576 -8.94341 -6.66638 -0.14618 0.35975 0.79145 1.22867 1.33222 1.43202 2.05334 2.37837 2.52568 2.96419 3.09923 3.36683 3.66970 3.79408 3.83614 4.04647 4.12406 4.19411 4.22432 4.30593 4.38643 4.41313 4.62468 4.64900 4.67487 4.70548 4.71700 4.81284 4.91979 4.94000 5.00945 5.03038 5.13027 5.13919 5.20708 5.24144 5.25530 5.37247 5.39404 5.42060 5.56601 5.72243 5.84419 6.04581 6.11249 6.15076 6.33128 6.46404 6.56579 6.72298 8.07517 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010415 B = 0.006164 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.725713 B = 4541.165834 C = 5336.180290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.067 3.933 3 H 0.093 0.907 4 C 0.146 3.854 5 N -1.096 6.096 6 S 2.719 3.281 7 O -1.004 7.004 8 O -1.009 7.009 9 C -0.782 4.782 10 C 0.002 3.998 11 C -0.249 4.249 12 C -0.043 4.043 13 C -0.259 4.259 14 C 0.147 3.853 15 C -0.483 4.483 16 H 0.107 0.893 17 C 0.073 3.927 18 N -0.802 5.802 19 Si 0.934 3.066 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.246 1.246 23 N -0.515 5.515 24 C 0.017 3.983 25 C -0.119 4.119 26 C -0.122 4.122 27 C 0.027 3.973 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.423 0.577 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.300 0.700 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 -1.551 -13.426 13.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.044 4.044 3 H 0.111 0.889 4 C 0.020 3.980 5 N -0.857 5.857 6 S 2.815 3.185 7 O -0.994 6.994 8 O -0.999 6.999 9 C -0.875 4.875 10 C -0.018 4.018 11 C -0.269 4.269 12 C -0.061 4.061 13 C -0.278 4.278 14 C 0.142 3.858 15 C -0.511 4.511 16 H 0.124 0.876 17 C -0.148 4.148 18 N -0.425 5.425 19 Si 0.758 3.242 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.170 1.170 23 N -0.239 5.239 24 C -0.110 4.110 25 C -0.158 4.158 26 C -0.160 4.160 27 C -0.100 4.100 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.260 0.740 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.000 -0.848 -12.726 12.794 hybrid contribution -1.484 -0.996 0.038 1.787 sum -2.484 -1.844 -12.689 13.060 Atomic orbital electron populations 1.22316 0.96066 1.02217 1.02929 1.22026 0.93694 0.98527 0.90122 0.88887 1.21515 0.78390 1.00697 0.97421 1.54947 1.16313 1.87648 1.26815 1.00327 0.71158 0.74238 0.72753 1.93458 1.80845 1.67251 1.57845 1.93424 1.34162 1.88606 1.83754 1.30191 1.05216 1.22565 1.29543 1.20739 0.96873 0.92803 0.91352 1.20987 0.97764 0.96402 1.11726 1.21277 0.93173 0.98513 0.93171 1.21373 1.00107 0.94800 1.11516 1.17296 0.90436 0.92879 0.85140 1.20334 0.91389 0.98637 1.40691 0.87568 1.26529 0.95534 1.00199 0.92503 1.69656 1.03443 1.36791 1.32616 0.85970 0.78766 0.79270 0.80198 1.18829 1.19582 1.16991 1.64855 1.54427 1.02893 1.01738 1.23398 0.97869 0.91777 0.97990 1.22462 1.02465 0.97756 0.93073 1.22358 1.02504 0.93510 0.97628 1.23003 1.00697 0.96836 0.89492 0.90160 0.93032 0.92109 0.92199 0.91633 0.73985 0.85389 0.84490 0.84627 0.87629 0.88899 0.92026 0.92972 0.90158 0.91069 0.90615 0.89974 0.92740 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.85 8.24 71.98 0.59 -4.26 16 2 C 0.07 1.98 2.53 44.92 0.11 2.09 16 3 H 0.09 2.59 8.12 -2.39 -0.02 2.57 16 4 C 0.15 5.56 3.70 86.38 0.32 5.88 16 5 N -1.10 -41.36 5.91 -187.48 -1.11 -42.47 16 6 S 2.72 121.16 5.44 -56.49 -0.31 120.85 16 7 O -1.00 -51.65 14.88 -128.00 -1.90 -53.56 16 8 O -1.01 -45.76 16.97 -128.00 -2.17 -47.93 16 9 C -0.78 -36.14 5.97 22.73 0.14 -36.01 16 10 C 0.00 0.08 9.53 22.22 0.21 0.29 16 11 C -0.25 -9.39 10.05 22.46 0.23 -9.16 16 12 C -0.04 -1.66 10.02 22.22 0.22 -1.44 16 13 C -0.26 -11.58 7.02 22.73 0.16 -11.42 16 14 C 0.15 7.15 5.08 -21.29 -0.11 7.05 16 15 C -0.48 -24.42 5.32 23.46 0.12 -24.30 16 16 H 0.11 5.97 4.52 -2.91 -0.01 5.95 16 17 C 0.07 3.44 4.69 85.25 0.40 3.84 16 18 N -0.80 -37.97 13.93 21.82 0.30 -37.67 16 19 Si 0.93 37.53 24.17 68.60 1.66 39.19 16 20 H -0.26 -10.28 6.69 99.48 0.67 -9.62 16 21 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 22 H -0.25 -10.16 6.70 99.48 0.67 -9.49 16 23 N -0.51 -13.51 4.50 -857.86 -3.86 -17.37 16 24 C 0.02 0.46 5.54 86.65 0.48 0.94 16 25 C -0.12 -2.40 7.06 31.80 0.22 -2.18 16 26 C -0.12 -2.04 6.93 31.47 0.22 -1.82 16 27 C 0.03 0.54 6.45 86.45 0.56 1.10 16 28 H 0.08 1.78 6.17 -2.39 -0.01 1.77 16 29 H 0.05 1.54 6.38 -2.38 -0.02 1.52 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 2.45 5.22 -2.39 -0.01 2.44 16 32 H 0.07 2.88 6.18 -2.38 -0.01 2.86 16 33 H 0.42 14.00 8.08 -96.75 -0.78 13.22 16 34 H 0.13 4.89 7.32 -2.91 -0.02 4.87 16 35 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.11 4.62 4.57 -2.91 -0.01 4.61 16 38 H 0.30 12.66 8.30 -92.71 -0.77 11.89 16 39 H 0.06 1.93 7.88 -2.39 -0.02 1.91 16 40 H 0.05 1.39 5.49 -2.39 -0.01 1.38 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 1.02 5.90 -2.39 -0.01 1.01 16 46 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -60.73 353.53 -3.36 -64.09 By element: Atomic # 1 Polarization: 44.10 SS G_CDS: 0.15 Total: 44.25 kcal Atomic # 6 Polarization: -73.28 SS G_CDS: 3.88 Total: -69.40 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -4.67 Total: -97.50 kcal Atomic # 8 Polarization: -97.41 SS G_CDS: -4.08 Total: -101.49 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 1.66 Total: 39.19 kcal Atomic # 16 Polarization: 121.16 SS G_CDS: -0.31 Total: 120.85 kcal Total: -60.73 -3.36 -64.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601303818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.480 kcal (2) G-P(sol) polarization free energy of solvation -60.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds