Wall clock time and date at job start Tue Mar 31 2020 21:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46697 * 2 1 4 4 C 1.52999 * 109.47128 * 240.00352 * 2 1 3 5 5 N 1.46505 * 109.46784 * 295.57779 * 4 2 1 6 6 S 1.65605 * 119.99892 * 163.64266 * 5 4 2 7 7 O 1.42109 * 106.40196 * 309.62068 * 6 5 4 8 8 O 1.42094 * 106.40173 * 176.69929 * 6 5 4 9 9 C 1.76203 * 107.21535 * 63.15500 * 6 5 4 10 10 C 1.37633 * 120.13034 * 245.08355 * 9 6 5 11 11 C 1.38614 * 120.24908 * 180.29974 * 10 9 6 12 12 C 1.38657 * 120.50140 * 359.44893 * 11 10 9 13 13 C 1.37603 * 120.24487 * 0.55685 * 12 11 10 14 14 C 1.40699 * 120.12600 * 65.11565 * 9 6 5 15 15 C 1.41402 * 120.24305 * 359.94680 * 14 9 6 16 16 H 1.07999 * 119.99981 * 328.07816 * 15 14 9 17 17 C 1.39948 * 119.99549 * 148.07155 * 15 14 9 18 18 N 1.30819 * 120.00342 * 348.31600 * 17 15 14 19 19 Si 1.86806 * 119.99504 * 168.31115 * 17 15 14 20 20 H 1.48494 * 109.47127 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46612 * 120.00550 * 19 17 15 22 22 H 1.48496 * 109.47167 * 240.00264 * 19 17 15 23 23 N 1.46895 * 109.47003 * 119.99656 * 2 1 3 24 24 C 1.46903 * 110.99604 * 170.88392 * 23 2 1 25 25 C 1.46892 * 111.00367 * 294.83501 * 23 2 1 26 26 C 1.53003 * 117.50251 * 243.74799 * 25 23 2 27 27 C 1.53001 * 117.50119 * 175.08614 * 25 23 2 28 28 H 1.09000 * 109.47520 * 60.00175 * 1 2 3 29 29 H 1.09004 * 109.46697 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47349 * 299.99757 * 1 2 3 31 31 H 1.09000 * 109.46881 * 175.58114 * 4 2 1 32 32 H 1.08997 * 109.47311 * 55.57940 * 4 2 1 33 33 H 0.96993 * 120.00117 * 343.64603 * 5 4 2 34 34 H 1.08000 * 119.87671 * 0.02904 * 10 9 6 35 35 H 1.08003 * 119.74486 * 179.70550 * 11 10 9 36 36 H 1.07993 * 119.87521 * 180.30074 * 12 11 10 37 37 H 1.07996 * 120.12338 * 179.75185 * 13 12 11 38 38 H 0.97000 * 120.00215 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.47284 * 55.34351 * 24 23 2 40 40 H 1.09000 * 109.47141 * 175.34852 * 24 23 2 41 41 H 1.09001 * 109.47091 * 295.34507 * 24 23 2 42 42 H 1.09002 * 115.54662 * 29.42092 * 25 23 2 43 43 H 1.09005 * 117.49643 * 0.02562 * 26 25 23 44 44 H 1.08997 * 117.49542 * 145.02085 * 26 25 23 45 45 H 1.08996 * 117.50286 * 214.98394 * 27 25 23 46 46 H 1.09005 * 117.49510 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6405 -2.1297 -1.1972 6 16 1.6904 -3.0558 -2.5692 7 8 1.0014 -2.3231 -3.5732 8 8 1.3243 -4.3720 -2.1785 9 6 3.3743 -3.1389 -3.0814 10 6 3.7624 -2.5728 -4.2743 11 6 5.0852 -2.6421 -4.6826 12 6 6.0340 -3.2710 -3.8909 13 6 5.6686 -3.8441 -2.6944 14 6 4.3274 -3.7848 -2.2726 15 6 3.9404 -4.3696 -1.0447 16 1 3.1357 -3.9358 -0.4698 17 6 4.6002 -5.5108 -0.5746 18 7 5.4104 -6.1694 -1.3628 19 14 4.3241 -6.0934 1.1787 20 1 3.3689 -5.1821 1.8585 21 1 3.7672 -7.4699 1.1608 22 1 5.6164 -6.0918 1.9102 23 7 2.0196 -0.6924 1.1994 24 6 3.4718 -0.9030 1.1297 25 6 1.6521 0.0413 2.4178 26 6 2.7887 0.6028 3.2744 27 6 1.9885 -0.6077 3.7619 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.1271 -0.6531 -1.2897 32 1 1.6135 -0.2551 -2.1375 33 1 1.3468 -2.5199 -0.3592 34 1 3.0326 -2.0764 -4.8969 35 1 5.3799 -2.1992 -5.6225 36 1 7.0628 -3.3149 -4.2165 37 1 6.4085 -4.3370 -2.0812 38 1 5.8680 -6.9601 -1.0368 39 1 3.9704 0.0530 0.9693 40 1 3.8205 -1.3424 2.0643 41 1 3.7021 -1.5760 0.3037 42 1 0.7330 0.6240 2.3564 43 1 3.8093 0.4281 2.9336 44 1 2.6172 1.5547 3.7768 45 1 1.2910 -0.4516 4.5848 46 1 2.4830 -1.5790 3.7420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601336160.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:04 Heat of formation + Delta-G solvation = -21.018631 kcal Electronic energy + Delta-G solvation = -28943.089689 eV Core-core repulsion = 25153.447249 eV Total energy + Delta-G solvation = -3789.642440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.31528 -37.57916 -36.27793 -35.98929 -34.75502 -33.83925 -32.65989 -30.49747 -30.14110 -29.56592 -26.36500 -25.52539 -25.16763 -22.41193 -21.64661 -21.40284 -21.10040 -19.41265 -18.59719 -17.68079 -16.98588 -16.63984 -16.15622 -15.61541 -15.37029 -14.98669 -14.51645 -14.37570 -14.23308 -13.91877 -13.39520 -13.25927 -13.12265 -12.72337 -12.55632 -12.44357 -11.97995 -11.88186 -11.66225 -11.52548 -11.42370 -11.29978 -11.25681 -11.14844 -11.07889 -11.01580 -10.96366 -10.93907 -10.65338 -10.46674 -10.38810 -10.30529 -9.85666 -9.44056 -9.36776 -8.66970 -8.08647 -8.02299 -7.56901 -6.99762 -4.72434 1.61549 2.34858 2.73484 3.00651 3.07953 3.11823 3.60251 3.82213 3.93186 4.12516 4.44581 4.72224 4.79648 4.83759 4.95441 5.00735 5.13405 5.29913 5.32614 5.37106 5.56985 5.64319 5.71686 5.73351 5.81006 5.82056 5.91498 5.96701 6.03250 6.05435 6.08867 6.23986 6.30658 6.35202 6.37975 6.46956 6.82446 6.95519 7.09933 7.10122 7.16307 7.33001 7.50354 7.63833 7.79227 7.80897 7.92008 8.30968 8.55045 8.65863 9.95443 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.005754 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.282093 B = 4864.713034 C = 6246.295544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.078 3.922 3 H 0.052 0.948 4 C 0.129 3.871 5 N -1.112 6.112 6 S 2.700 3.300 7 O -1.001 7.001 8 O -0.964 6.964 9 C -0.773 4.773 10 C -0.004 4.004 11 C -0.250 4.250 12 C -0.077 4.077 13 C -0.156 4.156 14 C 0.190 3.810 15 C -0.449 4.449 16 H 0.091 0.909 17 C 0.083 3.917 18 N -0.780 5.780 19 Si 0.911 3.089 20 H -0.251 1.251 21 H -0.270 1.270 22 H -0.272 1.272 23 N -0.501 5.501 24 C 0.010 3.990 25 C 0.023 3.977 26 C -0.222 4.222 27 C -0.172 4.172 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.419 0.581 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.286 0.714 39 H 0.027 0.973 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 10.888 7.843 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 H 0.070 0.930 4 C 0.001 3.999 5 N -0.871 5.871 6 S 2.797 3.203 7 O -0.992 6.992 8 O -0.955 6.955 9 C -0.868 4.868 10 C -0.024 4.024 11 C -0.270 4.270 12 C -0.096 4.096 13 C -0.176 4.176 14 C 0.185 3.815 15 C -0.477 4.477 16 H 0.109 0.891 17 C -0.138 4.138 18 N -0.403 5.403 19 Si 0.735 3.265 20 H -0.174 1.174 21 H -0.195 1.195 22 H -0.197 1.197 23 N -0.224 5.224 24 C -0.137 4.137 25 C -0.087 4.087 26 C -0.261 4.261 27 C -0.210 4.210 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.255 0.745 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.046 0.954 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.135 0.865 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.112 0.888 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.738 9.904 7.255 12.833 hybrid contribution 1.236 0.324 1.069 1.666 sum -2.502 10.228 8.324 13.422 Atomic orbital electron populations 1.21867 0.93865 1.03210 1.01281 1.21830 0.96261 0.95505 0.89537 0.92966 1.21220 0.99598 0.81736 0.97308 1.55501 1.83646 1.19666 1.28290 1.01068 0.74725 0.72485 0.71992 1.93441 1.73256 1.73987 1.58477 1.93544 1.83528 1.36196 1.82189 1.29968 1.21890 1.27409 1.07513 1.20265 0.95529 0.93399 0.93182 1.20486 0.93987 1.11038 1.01497 1.20889 0.97311 0.96439 0.94931 1.21412 0.96580 1.02381 0.97219 1.16996 0.90218 0.84501 0.89748 1.19881 1.15401 1.08609 1.03805 0.89074 1.25903 0.92623 0.95669 0.99621 1.69787 1.20480 1.13977 1.36045 0.86179 0.79335 0.79888 0.81145 1.17440 1.19467 1.19674 1.61817 1.14161 1.46099 1.00286 1.22671 0.86409 1.00600 1.04029 1.22692 0.98430 0.99554 0.87990 1.23567 0.98315 0.98094 1.06141 1.23050 1.03343 0.97538 0.97073 0.91909 0.91209 0.92881 0.91703 0.90329 0.74524 0.87482 0.88804 0.88909 0.86323 0.90305 0.95405 0.91427 0.88782 0.86466 0.88184 0.89293 0.88840 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.05 37.16 0.34 -1.26 16 2 C 0.08 0.93 2.37 -67.72 -0.16 0.77 16 3 H 0.05 0.57 8.13 -51.93 -0.42 0.14 16 4 C 0.13 1.87 5.07 -4.04 -0.02 1.85 16 5 N -1.11 -19.12 4.24 -10.61 -0.05 -19.16 16 6 S 2.70 58.52 4.96 -107.50 -0.53 57.98 16 7 O -1.00 -22.56 16.49 -57.17 -0.94 -23.50 16 8 O -0.96 -24.13 16.63 -57.17 -0.95 -25.08 16 9 C -0.77 -18.13 5.90 -38.87 -0.23 -18.36 16 10 C 0.00 -0.09 9.53 -39.66 -0.38 -0.47 16 11 C -0.25 -5.39 10.05 -39.29 -0.39 -5.78 16 12 C -0.08 -1.70 10.02 -39.66 -0.40 -2.09 16 13 C -0.16 -3.78 8.64 -38.87 -0.34 -4.12 16 14 C 0.19 4.71 5.50 -106.82 -0.59 4.13 16 15 C -0.45 -10.97 7.52 -37.74 -0.28 -11.25 16 16 H 0.09 2.10 5.97 -52.49 -0.31 1.78 16 17 C 0.08 1.98 5.21 -17.34 -0.09 1.89 16 18 N -0.78 -19.24 11.12 55.55 0.62 -18.62 16 19 Si 0.91 18.08 29.58 -169.99 -5.03 13.05 16 20 H -0.25 -4.86 7.11 56.52 0.40 -4.46 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 23 N -0.50 -6.27 4.12 -226.90 -0.93 -7.21 16 24 C 0.01 0.14 7.43 60.07 0.45 0.58 16 25 C 0.02 0.24 5.81 -67.71 -0.39 -0.15 16 26 C -0.22 -2.18 9.52 -26.69 -0.25 -2.43 16 27 C -0.17 -1.77 9.97 -26.69 -0.27 -2.04 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.86 7.53 -51.93 -0.39 0.47 16 30 H 0.05 0.50 6.37 -51.93 -0.33 0.17 16 31 H 0.06 0.96 6.70 -51.93 -0.35 0.61 16 32 H 0.08 1.11 7.77 -51.93 -0.40 0.70 16 33 H 0.42 6.95 7.65 -34.47 -0.26 6.69 16 34 H 0.11 2.22 7.32 -52.49 -0.38 1.84 16 35 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 36 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.12 2.91 6.51 -52.49 -0.34 2.56 16 38 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 39 H 0.03 0.33 7.53 -51.93 -0.39 -0.06 16 40 H 0.07 0.87 6.30 -51.93 -0.33 0.55 16 41 H 0.09 1.46 6.38 -51.93 -0.33 1.13 16 42 H 0.12 1.12 6.29 -51.93 -0.33 0.80 16 43 H 0.10 1.04 5.92 -51.93 -0.31 0.73 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 1.13 7.57 -51.93 -0.39 0.74 16 LS Contribution 372.84 15.07 5.62 5.62 Total: -1.00 -29.61 372.84 -11.73 -41.34 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -6.52 Total: 14.32 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: -3.01 Total: -38.74 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.36 Total: -44.99 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -1.89 Total: -48.59 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 58.52 SS G_CDS: -0.53 Total: 57.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.61 -11.73 -41.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336160.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.319 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds