Wall clock time and date at job start Tue Mar 31 2020 21:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46697 * 2 1 4 4 C 1.52999 * 109.47128 * 240.00352 * 2 1 3 5 5 N 1.46505 * 109.46784 * 295.57779 * 4 2 1 6 6 S 1.65605 * 119.99892 * 163.64266 * 5 4 2 7 7 O 1.42109 * 106.40196 * 309.62068 * 6 5 4 8 8 O 1.42094 * 106.40173 * 176.69929 * 6 5 4 9 9 C 1.76203 * 107.21535 * 63.15500 * 6 5 4 10 10 C 1.37633 * 120.13034 * 245.08355 * 9 6 5 11 11 C 1.38614 * 120.24908 * 180.29974 * 10 9 6 12 12 C 1.38657 * 120.50140 * 359.44893 * 11 10 9 13 13 C 1.37603 * 120.24487 * 0.55685 * 12 11 10 14 14 C 1.40699 * 120.12600 * 65.11565 * 9 6 5 15 15 C 1.41402 * 120.24305 * 359.94680 * 14 9 6 16 16 H 1.07999 * 119.99981 * 328.07816 * 15 14 9 17 17 C 1.39948 * 119.99549 * 148.07155 * 15 14 9 18 18 N 1.30819 * 120.00342 * 348.31600 * 17 15 14 19 19 Si 1.86806 * 119.99504 * 168.31115 * 17 15 14 20 20 H 1.48494 * 109.47127 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46612 * 120.00550 * 19 17 15 22 22 H 1.48496 * 109.47167 * 240.00264 * 19 17 15 23 23 N 1.46895 * 109.47003 * 119.99656 * 2 1 3 24 24 C 1.46903 * 110.99604 * 170.88392 * 23 2 1 25 25 C 1.46892 * 111.00367 * 294.83501 * 23 2 1 26 26 C 1.53003 * 117.50251 * 243.74799 * 25 23 2 27 27 C 1.53001 * 117.50119 * 175.08614 * 25 23 2 28 28 H 1.09000 * 109.47520 * 60.00175 * 1 2 3 29 29 H 1.09004 * 109.46697 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47349 * 299.99757 * 1 2 3 31 31 H 1.09000 * 109.46881 * 175.58114 * 4 2 1 32 32 H 1.08997 * 109.47311 * 55.57940 * 4 2 1 33 33 H 0.96993 * 120.00117 * 343.64603 * 5 4 2 34 34 H 1.08000 * 119.87671 * 0.02904 * 10 9 6 35 35 H 1.08003 * 119.74486 * 179.70550 * 11 10 9 36 36 H 1.07993 * 119.87521 * 180.30074 * 12 11 10 37 37 H 1.07996 * 120.12338 * 179.75185 * 13 12 11 38 38 H 0.97000 * 120.00215 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.47284 * 55.34351 * 24 23 2 40 40 H 1.09000 * 109.47141 * 175.34852 * 24 23 2 41 41 H 1.09001 * 109.47091 * 295.34507 * 24 23 2 42 42 H 1.09002 * 115.54662 * 29.42092 * 25 23 2 43 43 H 1.09005 * 117.49643 * 0.02562 * 26 25 23 44 44 H 1.08997 * 117.49542 * 145.02085 * 26 25 23 45 45 H 1.08996 * 117.50286 * 214.98394 * 27 25 23 46 46 H 1.09005 * 117.49510 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6405 -2.1297 -1.1972 6 16 1.6904 -3.0558 -2.5692 7 8 1.0014 -2.3231 -3.5732 8 8 1.3243 -4.3720 -2.1785 9 6 3.3743 -3.1389 -3.0814 10 6 3.7624 -2.5728 -4.2743 11 6 5.0852 -2.6421 -4.6826 12 6 6.0340 -3.2710 -3.8909 13 6 5.6686 -3.8441 -2.6944 14 6 4.3274 -3.7848 -2.2726 15 6 3.9404 -4.3696 -1.0447 16 1 3.1357 -3.9358 -0.4698 17 6 4.6002 -5.5108 -0.5746 18 7 5.4104 -6.1694 -1.3628 19 14 4.3241 -6.0934 1.1787 20 1 3.3689 -5.1821 1.8585 21 1 3.7672 -7.4699 1.1608 22 1 5.6164 -6.0918 1.9102 23 7 2.0196 -0.6924 1.1994 24 6 3.4718 -0.9030 1.1297 25 6 1.6521 0.0413 2.4178 26 6 2.7887 0.6028 3.2744 27 6 1.9885 -0.6077 3.7619 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.1271 -0.6531 -1.2897 32 1 1.6135 -0.2551 -2.1375 33 1 1.3468 -2.5199 -0.3592 34 1 3.0326 -2.0764 -4.8969 35 1 5.3799 -2.1992 -5.6225 36 1 7.0628 -3.3149 -4.2165 37 1 6.4085 -4.3370 -2.0812 38 1 5.8680 -6.9601 -1.0368 39 1 3.9704 0.0530 0.9693 40 1 3.8205 -1.3424 2.0643 41 1 3.7021 -1.5760 0.3037 42 1 0.7330 0.6240 2.3564 43 1 3.8093 0.4281 2.9336 44 1 2.6172 1.5547 3.7768 45 1 1.2910 -0.4516 4.5848 46 1 2.4830 -1.5790 3.7420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601336160.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:03 Heat of formation + Delta-G solvation = -39.847730 kcal Electronic energy + Delta-G solvation = -28943.906180 eV Core-core repulsion = 25153.447249 eV Total energy + Delta-G solvation = -3790.458931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.25194 -39.35244 -37.98497 -37.14394 -36.60130 -35.61732 -33.83879 -32.00816 -31.41299 -31.33778 -27.52242 -27.27201 -26.18546 -23.41345 -23.18858 -22.93531 -22.33022 -20.45720 -20.12155 -19.46852 -18.50456 -17.88949 -17.64742 -17.17914 -16.86466 -16.24480 -16.00659 -15.70124 -15.41527 -15.16675 -15.02506 -14.88902 -14.44801 -14.40265 -13.70782 -13.57546 -13.34518 -13.24724 -12.98512 -12.95914 -12.89018 -12.83613 -12.81126 -12.75832 -12.49501 -12.40811 -12.32638 -12.10725 -12.01419 -11.94127 -11.60644 -11.37181 -11.19486 -11.13496 -11.07785 -10.12364 -9.81244 -9.38092 -8.99912 -8.77218 -6.56700 -0.09124 0.55153 0.98225 1.36981 1.48700 1.52223 2.17480 2.40809 2.66518 2.77021 3.04976 3.17370 3.49910 3.74376 3.94006 3.99654 4.09104 4.17509 4.23346 4.35012 4.38881 4.44740 4.51550 4.56797 4.64792 4.73070 4.81687 4.89341 4.91065 4.93319 5.00607 5.04666 5.08590 5.16069 5.25481 5.27332 5.31022 5.33576 5.46783 5.55205 5.72991 5.84844 6.01499 6.12192 6.13744 6.23715 6.39304 6.51032 6.73168 6.85689 8.21155 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.005754 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.282093 B = 4864.713034 C = 6246.295544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.072 0.928 4 C 0.122 3.878 5 N -1.097 6.097 6 S 2.719 3.281 7 O -1.010 7.010 8 O -1.002 7.002 9 C -0.787 4.787 10 C -0.017 4.017 11 C -0.249 4.249 12 C -0.076 4.076 13 C -0.182 4.182 14 C 0.169 3.831 15 C -0.471 4.471 16 H 0.095 0.905 17 C 0.042 3.958 18 N -0.813 5.813 19 Si 0.968 3.032 20 H -0.246 1.246 21 H -0.273 1.273 22 H -0.256 1.256 23 N -0.514 5.514 24 C 0.016 3.984 25 C 0.016 3.984 26 C -0.213 4.213 27 C -0.176 4.176 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.423 0.577 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.293 0.707 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.134 0.866 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 12.752 8.735 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 H 0.090 0.910 4 C -0.005 4.005 5 N -0.859 5.859 6 S 2.815 3.185 7 O -1.001 7.001 8 O -0.993 6.993 9 C -0.881 4.881 10 C -0.036 4.036 11 C -0.269 4.269 12 C -0.094 4.094 13 C -0.202 4.202 14 C 0.164 3.836 15 C -0.500 4.500 16 H 0.113 0.887 17 C -0.175 4.175 18 N -0.438 5.438 19 Si 0.788 3.212 20 H -0.169 1.169 21 H -0.198 1.198 22 H -0.181 1.181 23 N -0.237 5.237 24 C -0.132 4.132 25 C -0.093 4.093 26 C -0.252 4.252 27 C -0.214 4.214 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.260 0.740 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.152 0.848 43 H 0.110 0.890 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.123 11.779 8.134 14.897 hybrid contribution 1.369 -0.164 0.704 1.548 sum -2.753 11.616 8.838 14.853 Atomic orbital electron populations 1.21874 0.92933 1.02613 1.02706 1.21803 0.96886 0.95789 0.88007 0.90983 1.21466 0.99564 0.80176 0.99270 1.55090 1.83319 1.20541 1.26998 1.00358 0.73903 0.71847 0.72395 1.93418 1.73228 1.73934 1.59481 1.93485 1.83970 1.38879 1.82937 1.30237 1.22561 1.27262 1.08050 1.20585 0.96537 0.93463 0.93054 1.20888 0.93483 1.10077 1.02421 1.21231 0.98987 0.95192 0.94030 1.21459 0.96411 1.03863 0.98461 1.17268 0.90828 0.85086 0.90389 1.20104 1.16211 1.09344 1.04326 0.88664 1.26700 0.92231 0.95549 1.03038 1.69827 1.21570 1.14727 1.37673 0.85339 0.79902 0.79016 0.76901 1.16890 1.19781 1.18059 1.61779 1.13470 1.47213 1.01268 1.22535 0.87370 1.00476 1.02810 1.22810 0.99436 0.99929 0.87146 1.23570 0.97568 0.98580 1.05465 1.23083 1.03796 0.97027 0.97491 0.91153 0.92797 0.90848 0.92200 0.89753 0.74009 0.86000 0.85543 0.86102 0.87471 0.89644 0.94376 0.91548 0.91507 0.84835 0.88979 0.87584 0.87214 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.05 71.98 0.65 -2.20 16 2 C 0.08 1.86 2.37 44.92 0.11 1.97 16 3 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 4 C 0.12 3.43 5.07 86.38 0.44 3.87 16 5 N -1.10 -37.74 4.24 -187.48 -0.80 -38.54 16 6 S 2.72 118.93 4.96 -56.49 -0.28 118.65 16 7 O -1.01 -45.18 16.49 -128.00 -2.11 -47.29 16 8 O -1.00 -51.30 16.63 -128.00 -2.13 -53.43 16 9 C -0.79 -37.29 5.90 22.73 0.13 -37.16 16 10 C -0.02 -0.74 9.53 22.22 0.21 -0.53 16 11 C -0.25 -10.33 10.05 22.46 0.23 -10.10 16 12 C -0.08 -3.28 10.02 22.22 0.22 -3.06 16 13 C -0.18 -8.98 8.64 22.73 0.20 -8.78 16 14 C 0.17 8.56 5.50 -21.29 -0.12 8.44 16 15 C -0.47 -23.69 7.52 23.46 0.18 -23.51 16 16 H 0.10 4.52 5.97 -2.91 -0.02 4.50 16 17 C 0.04 2.06 5.21 85.26 0.44 2.50 16 18 N -0.81 -41.20 11.12 21.83 0.24 -40.95 16 19 Si 0.97 37.43 29.58 68.60 2.03 39.46 16 20 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 23 N -0.51 -12.17 4.12 -871.79 -3.59 -15.76 16 24 C 0.02 0.41 7.43 127.69 0.95 1.36 16 25 C 0.02 0.30 5.81 44.92 0.26 0.56 16 26 C -0.21 -3.68 9.52 30.62 0.29 -3.39 16 27 C -0.18 -3.30 9.97 30.62 0.31 -2.99 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.25 7.53 -2.39 -0.02 1.23 16 30 H 0.07 1.16 6.37 -2.39 -0.02 1.14 16 31 H 0.06 1.76 6.70 -2.39 -0.02 1.74 16 32 H 0.08 2.28 7.77 -2.39 -0.02 2.26 16 33 H 0.42 14.11 7.65 -96.75 -0.74 13.37 16 34 H 0.12 4.92 7.32 -2.91 -0.02 4.90 16 35 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.11 5.43 6.51 -2.91 -0.02 5.42 16 38 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 39 H 0.04 0.88 7.53 -2.38 -0.02 0.86 16 40 H 0.07 1.70 6.30 -2.39 -0.02 1.69 16 41 H 0.07 2.11 6.38 -2.39 -0.02 2.10 16 42 H 0.13 2.10 6.29 -2.39 -0.02 2.09 16 43 H 0.09 1.75 5.92 -2.38 -0.01 1.74 16 44 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.11 1.67 8.14 -2.39 -0.02 1.66 16 46 H 0.08 1.80 7.57 -2.38 -0.02 1.78 16 Total: -1.00 -63.92 372.84 -1.87 -65.79 By element: Atomic # 1 Polarization: 44.80 SS G_CDS: 0.27 Total: 45.06 kcal Atomic # 6 Polarization: -77.49 SS G_CDS: 4.50 Total: -73.00 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -4.14 Total: -95.25 kcal Atomic # 8 Polarization: -96.48 SS G_CDS: -4.24 Total: -100.72 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Atomic # 16 Polarization: 118.93 SS G_CDS: -0.28 Total: 118.65 kcal Total: -63.92 -1.87 -65.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336160.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.942 kcal (2) G-P(sol) polarization free energy of solvation -63.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds