Wall clock time and date at job start Tue Mar 31 2020 21:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46459 * 2 1 4 4 C 1.52995 * 109.46997 * 120.00389 * 2 1 3 5 5 N 1.46505 * 109.46606 * 177.41753 * 4 2 1 6 6 S 1.65608 * 119.99711 * 161.40655 * 5 4 2 7 7 O 1.42099 * 106.39987 * 177.67427 * 6 5 4 8 8 O 1.42100 * 106.40072 * 310.59322 * 6 5 4 9 9 C 1.76197 * 107.21717 * 64.13129 * 6 5 4 10 10 C 1.37639 * 120.12963 * 247.14460 * 9 6 5 11 11 C 1.38606 * 120.24857 * 179.97438 * 10 9 6 12 12 C 1.38664 * 120.50412 * 0.02679 * 11 10 9 13 13 C 1.37600 * 120.24477 * 0.02562 * 12 11 10 14 14 C 1.40701 * 120.12386 * 66.87845 * 9 6 5 15 15 C 1.41392 * 120.24717 * 359.97438 * 14 9 6 16 16 H 1.08001 * 120.00142 * 328.35075 * 15 14 9 17 17 C 1.39945 * 119.99925 * 148.34922 * 15 14 9 18 18 N 1.30825 * 120.00152 * 345.88772 * 17 15 14 19 19 Si 1.86800 * 119.99901 * 165.89037 * 17 15 14 20 20 H 1.48496 * 109.47524 * 89.99690 * 19 17 15 21 21 H 1.48504 * 109.47293 * 210.00129 * 19 17 15 22 22 H 1.48506 * 109.47002 * 329.99658 * 19 17 15 23 23 N 1.46901 * 109.47116 * 240.00485 * 2 1 3 24 24 C 1.46907 * 110.99980 * 72.15905 * 23 2 1 25 25 C 1.46898 * 111.00068 * 308.20710 * 23 2 1 26 26 C 1.53004 * 117.49658 * 250.27553 * 25 23 2 27 27 C 1.52998 * 117.49896 * 181.65489 * 25 23 2 28 28 H 1.08999 * 109.47432 * 67.53619 * 1 2 3 29 29 H 1.09007 * 109.46899 * 187.53214 * 1 2 3 30 30 H 1.08999 * 109.47478 * 307.53134 * 1 2 3 31 31 H 1.08996 * 109.47235 * 297.41415 * 4 2 1 32 32 H 1.08998 * 109.47442 * 57.41680 * 4 2 1 33 33 H 0.96996 * 120.00007 * 341.40890 * 5 4 2 34 34 H 1.08001 * 119.87322 * 0.02562 * 10 9 6 35 35 H 1.08004 * 119.75226 * 180.02562 * 11 10 9 36 36 H 1.07991 * 119.87750 * 179.97438 * 12 11 10 37 37 H 1.07996 * 120.12701 * 179.97438 * 13 12 11 38 38 H 0.97000 * 119.99997 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.46800 * 58.40292 * 24 23 2 40 40 H 1.08994 * 109.46785 * 178.40065 * 24 23 2 41 41 H 1.09002 * 109.47156 * 298.40530 * 24 23 2 42 42 H 1.09000 * 115.55063 * 35.97939 * 25 23 2 43 43 H 1.08993 * 117.49674 * 359.97438 * 26 25 23 44 44 H 1.09003 * 117.49333 * 145.02159 * 26 25 23 45 45 H 1.08999 * 117.49611 * 214.97761 * 27 25 23 46 46 H 1.08999 * 117.49874 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5037 -0.7754 1.2184 6 16 4.3509 -1.0689 2.6107 7 8 5.7230 -1.1131 2.2438 8 8 3.8363 -0.1761 3.5892 9 6 3.9266 -2.6928 3.1469 10 6 3.2144 -2.8721 4.3109 11 6 2.8788 -4.1484 4.7347 12 6 3.2559 -5.2580 3.9935 13 6 3.9693 -5.1026 2.8271 14 6 4.3098 -3.8111 2.3837 15 6 5.0363 -3.6388 1.1830 16 1 4.8804 -2.7570 0.5792 17 6 5.9574 -4.6110 0.7769 18 7 6.3531 -5.5299 1.6199 19 14 6.6221 -4.5965 -0.9687 20 1 7.8513 -3.7651 -1.0236 21 1 6.9442 -5.9844 -1.3874 22 1 5.5992 -4.0285 -1.8832 23 7 2.0197 -0.6924 -1.1995 24 6 1.7990 0.1201 -2.4034 25 6 1.3955 -2.0152 -1.3355 26 6 2.2800 -3.2413 -1.1004 27 6 1.8299 -2.8831 -2.5182 28 1 -0.3634 0.3927 -0.9497 29 1 -0.3633 -1.0189 0.1347 30 1 -0.3634 0.6260 0.8149 31 1 1.7150 -0.1815 2.1385 32 1 1.6393 -1.7347 1.2726 33 1 3.9766 -0.6393 0.3825 34 1 2.9151 -2.0149 4.8959 35 1 2.3194 -4.2798 5.6492 36 1 2.9895 -6.2478 4.3333 37 1 4.2624 -5.9682 2.2516 38 1 6.9918 -6.2035 1.3385 39 1 2.3067 1.0783 -2.2930 40 1 2.1962 -0.4035 -3.2729 41 1 0.7304 0.2885 -2.5373 42 1 0.3537 -2.0780 -1.0210 43 1 3.3251 -3.0663 -0.8453 44 1 1.8202 -4.1110 -0.6310 45 1 1.0741 -3.5172 -2.9815 46 1 2.5787 -2.4725 -3.1956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601336161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:06 Heat of formation + Delta-G solvation = -43.058614 kcal Electronic energy + Delta-G solvation = -29294.696102 eV Core-core repulsion = 25504.097937 eV Total energy + Delta-G solvation = -3790.598165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.07038 -39.31564 -37.96916 -36.60598 -36.57573 -35.61141 -34.60581 -31.96091 -31.36247 -31.25027 -27.30908 -26.97016 -25.92152 -23.40854 -23.29641 -22.94539 -22.84771 -20.17599 -20.02569 -19.42084 -18.34943 -17.97864 -17.32546 -17.26597 -16.89421 -16.32069 -16.00527 -15.69273 -15.32810 -15.06191 -14.90664 -14.64808 -14.42077 -14.06358 -13.83923 -13.79412 -13.51747 -13.37278 -13.19139 -12.96306 -12.93897 -12.88504 -12.81497 -12.73281 -12.56610 -12.40300 -12.19436 -12.09672 -11.88499 -11.63516 -11.58998 -11.15752 -11.13514 -11.05751 -10.90921 -10.10452 -9.78172 -9.35833 -9.08435 -8.76249 -6.51459 -0.06514 0.58670 1.01300 1.37747 1.48242 1.53869 2.18613 2.44673 2.69169 2.95124 3.03569 3.07745 3.53468 3.78726 4.00556 4.10347 4.17768 4.22303 4.32730 4.36944 4.46340 4.49657 4.53156 4.59214 4.70206 4.75216 4.80500 4.88599 4.90485 4.99746 5.03529 5.12275 5.16075 5.17724 5.19200 5.30911 5.35456 5.42296 5.53264 5.58838 5.75664 5.87288 6.03990 6.15944 6.23066 6.28594 6.43286 6.54032 6.76033 6.88961 8.22539 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009361 B = 0.006523 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.324973 B = 4291.382047 C = 5573.062294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.083 3.917 3 H 0.098 0.902 4 C 0.131 3.869 5 N -1.097 6.097 6 S 2.717 3.283 7 O -1.002 7.002 8 O -1.014 7.014 9 C -0.788 4.788 10 C -0.017 4.017 11 C -0.251 4.251 12 C -0.077 4.077 13 C -0.181 4.181 14 C 0.172 3.828 15 C -0.460 4.460 16 H 0.094 0.906 17 C 0.045 3.955 18 N -0.812 5.812 19 Si 0.961 3.039 20 H -0.271 1.271 21 H -0.263 1.263 22 H -0.238 1.238 23 N -0.522 5.522 24 C 0.027 3.973 25 C 0.010 3.990 26 C -0.179 4.179 27 C -0.165 4.165 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.422 0.578 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.292 0.708 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.039 0.961 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.106 0.894 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.509 5.835 -9.282 15.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.027 4.027 3 H 0.116 0.884 4 C 0.004 3.996 5 N -0.858 5.858 6 S 2.813 3.187 7 O -0.993 6.993 8 O -1.004 7.004 9 C -0.882 4.882 10 C -0.036 4.036 11 C -0.271 4.271 12 C -0.095 4.095 13 C -0.201 4.201 14 C 0.168 3.832 15 C -0.488 4.488 16 H 0.112 0.888 17 C -0.173 4.173 18 N -0.436 5.436 19 Si 0.781 3.219 20 H -0.197 1.197 21 H -0.188 1.188 22 H -0.160 1.160 23 N -0.246 5.246 24 C -0.120 4.120 25 C -0.099 4.099 26 C -0.217 4.217 27 C -0.202 4.202 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.258 0.742 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.124 0.876 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.353 6.172 -8.640 14.830 hybrid contribution -0.211 -1.025 -0.636 1.224 sum -10.564 5.147 -9.276 14.971 Atomic orbital electron populations 1.22352 0.95041 1.02869 1.03499 1.21869 0.94259 0.97954 0.88652 0.88374 1.21332 0.78689 1.00625 0.98946 1.55040 1.15783 1.88885 1.26061 1.00383 0.72191 0.73618 0.72488 1.93486 1.34199 1.88194 1.83392 1.93410 1.81537 1.64465 1.60982 1.30205 1.28168 1.20224 1.09643 1.20565 0.92399 0.97701 0.92957 1.20847 1.10642 0.92325 1.03264 1.21202 0.95717 0.98300 0.94299 1.21410 1.02387 0.97436 0.98849 1.17217 0.85462 0.90584 0.89963 1.19975 1.17682 1.05847 1.05343 0.88784 1.26662 0.95086 0.92958 1.02587 1.69837 1.24165 1.12684 1.36918 0.85498 0.79710 0.78968 0.77698 1.19651 1.18760 1.16033 1.61807 1.57539 1.02020 1.03213 1.22387 1.00162 0.97600 0.91847 1.22493 0.96345 0.87105 1.03915 1.23065 1.01109 0.98257 0.99293 1.23068 1.03566 1.02554 0.91049 0.90848 0.92107 0.90716 0.90369 0.92640 0.74186 0.86195 0.85716 0.86237 0.87658 0.89678 0.90826 0.91282 0.94277 0.87943 0.89449 0.89985 0.87553 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 8.45 71.98 0.61 -2.40 16 2 C 0.08 1.80 2.51 44.91 0.11 1.91 16 3 H 0.10 1.97 8.01 -2.38 -0.02 1.95 16 4 C 0.13 3.78 5.57 86.38 0.48 4.26 16 5 N -1.10 -38.30 5.14 -187.49 -0.96 -39.27 16 6 S 2.72 120.59 4.98 -56.49 -0.28 120.31 16 7 O -1.00 -51.72 16.47 -128.00 -2.11 -53.83 16 8 O -1.01 -46.23 16.42 -128.00 -2.10 -48.33 16 9 C -0.79 -37.79 5.93 22.73 0.13 -37.66 16 10 C -0.02 -0.74 9.53 22.22 0.21 -0.53 16 11 C -0.25 -10.55 10.05 22.46 0.23 -10.33 16 12 C -0.08 -3.35 10.02 22.22 0.22 -3.13 16 13 C -0.18 -8.96 8.65 22.73 0.20 -8.76 16 14 C 0.17 8.77 5.50 -21.29 -0.12 8.65 16 15 C -0.46 -23.07 6.97 23.46 0.16 -22.90 16 16 H 0.09 4.48 5.22 -2.91 -0.02 4.46 16 17 C 0.04 2.19 5.17 85.26 0.44 2.63 16 18 N -0.81 -41.23 11.22 21.83 0.24 -40.98 16 19 Si 0.96 37.36 29.58 68.60 2.03 39.39 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 22 H -0.24 -8.60 7.11 99.48 0.71 -7.89 16 23 N -0.52 -11.81 4.19 -871.78 -3.65 -15.46 16 24 C 0.03 0.47 9.21 127.69 1.18 1.65 16 25 C 0.01 0.23 3.98 44.92 0.18 0.41 16 26 C -0.18 -5.35 10.40 30.60 0.32 -5.03 16 27 C -0.16 -3.75 9.75 30.59 0.30 -3.45 16 28 H 0.07 1.05 6.55 -2.39 -0.02 1.03 16 29 H 0.06 1.08 6.34 -2.38 -0.02 1.07 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 2.20 7.70 -2.39 -0.02 2.18 16 32 H 0.06 1.71 7.48 -2.39 -0.02 1.69 16 33 H 0.42 14.10 8.02 -96.74 -0.78 13.32 16 34 H 0.12 4.93 7.32 -2.91 -0.02 4.91 16 35 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 36 H 0.12 4.46 8.06 -2.92 -0.02 4.44 16 37 H 0.11 5.35 6.56 -2.91 -0.02 5.33 16 38 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 39 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 40 H 0.07 1.19 6.91 -2.39 -0.02 1.17 16 41 H 0.04 0.58 6.64 -2.39 -0.02 0.56 16 42 H 0.10 2.19 5.77 -2.39 -0.01 2.18 16 43 H 0.09 3.16 6.75 -2.39 -0.02 3.15 16 44 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.11 2.01 8.14 -2.39 -0.02 2.00 16 46 H 0.09 2.13 7.36 -2.39 -0.02 2.11 16 Total: -1.00 -64.42 374.57 -1.95 -66.37 By element: Atomic # 1 Polarization: 46.24 SS G_CDS: 0.23 Total: 46.47 kcal Atomic # 6 Polarization: -79.33 SS G_CDS: 4.65 Total: -74.68 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -4.37 Total: -95.71 kcal Atomic # 8 Polarization: -97.95 SS G_CDS: -4.21 Total: -102.16 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Atomic # 16 Polarization: 120.59 SS G_CDS: -0.28 Total: 120.31 kcal Total: -64.42 -1.95 -66.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601336161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.314 kcal (2) G-P(sol) polarization free energy of solvation -64.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds