Wall clock time and date at job start Tue Mar 31 2020 20:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46949 * 2 1 4 4 N 1.46498 * 109.47015 * 120.00588 * 2 1 3 5 5 S 1.65602 * 119.99731 * 264.06133 * 4 2 1 6 6 O 1.42097 * 106.40333 * 311.08822 * 5 4 2 7 7 O 1.42101 * 106.40160 * 178.16180 * 5 4 2 8 8 C 1.76208 * 107.21712 * 64.62491 * 5 4 2 9 9 C 1.37636 * 120.12872 * 243.83233 * 8 5 4 10 10 C 1.38609 * 120.24982 * 179.97438 * 9 8 5 11 11 C 1.38655 * 120.50021 * 359.97438 * 10 9 8 12 12 C 1.37597 * 120.24777 * 0.02562 * 11 10 9 13 13 C 1.40699 * 120.12479 * 63.81067 * 8 5 4 14 14 C 1.41390 * 120.24719 * 359.97438 * 13 8 5 15 15 H 1.07998 * 120.00033 * 330.23393 * 14 13 8 16 16 C 1.39950 * 120.00215 * 150.22768 * 14 13 8 17 17 N 1.30821 * 119.99954 * 166.45179 * 16 14 13 18 18 Si 1.86801 * 119.99827 * 346.45589 * 16 14 13 19 19 H 1.48503 * 109.46938 * 90.06075 * 18 16 14 20 20 H 1.48491 * 109.47248 * 210.06430 * 18 16 14 21 21 H 1.48501 * 109.47116 * 330.06629 * 18 16 14 22 22 C 1.52998 * 109.46854 * 240.00397 * 2 1 3 23 23 H 1.09000 * 109.50702 * 299.92000 * 22 2 1 24 24 C 1.53117 * 109.50612 * 60.00177 * 22 2 1 25 25 C 1.53120 * 109.16296 * 177.59599 * 24 22 2 26 26 C 1.53040 * 109.27518 * 302.34391 * 25 24 22 27 27 N 1.46839 * 109.52544 * 59.17935 * 26 25 24 28 28 C 1.46851 * 111.20009 * 298.25805 * 27 26 25 29 29 H 1.09005 * 109.46913 * 59.99677 * 1 2 3 30 30 H 1.09000 * 109.47194 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47299 * 299.99946 * 1 2 3 32 32 H 0.96997 * 120.00509 * 84.06554 * 4 2 1 33 33 H 1.08007 * 119.87405 * 359.97438 * 9 8 5 34 34 H 1.08003 * 119.75030 * 180.02562 * 10 9 8 35 35 H 1.07999 * 119.87719 * 180.28058 * 11 10 9 36 36 H 1.08000 * 120.12521 * 179.97438 * 12 11 10 37 37 H 0.96998 * 119.99449 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.52324 * 297.49794 * 24 22 2 39 39 H 1.08999 * 109.52649 * 57.68782 * 24 22 2 40 40 H 1.08995 * 109.50324 * 62.28337 * 25 24 22 41 41 H 1.08999 * 109.50066 * 182.40404 * 25 24 22 42 42 H 1.08997 * 109.45915 * 179.19684 * 26 25 24 43 43 H 1.09005 * 109.46126 * 299.17213 * 26 25 24 44 44 H 1.00903 * 111.00456 * 174.16092 * 27 26 25 45 45 H 1.09003 * 109.46012 * 301.72868 * 28 27 26 46 46 H 1.09001 * 109.46534 * 181.75640 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4342 0.1789 2.5426 6 8 3.2835 1.2273 2.0967 7 8 2.8208 -0.7685 3.5286 8 6 0.9661 0.9483 3.1406 9 6 0.8618 2.3207 3.1546 10 6 -0.2921 2.9285 3.6239 11 6 -1.3534 2.1637 4.0835 12 6 -1.2712 0.7902 4.0787 13 6 -0.1043 0.1621 3.6051 14 6 -0.0089 -1.2485 3.5945 15 1 0.5951 -1.7433 2.8484 16 6 -0.6972 -2.0037 4.5509 17 7 -0.8305 -3.2953 4.3922 18 14 -1.4255 -1.1671 6.0539 19 1 -2.8156 -0.7378 5.7565 20 1 -1.4343 -2.1182 7.1942 21 1 -0.6055 0.0200 6.4058 22 6 2.0400 -0.7212 -1.2493 23 1 1.6781 -1.7493 -1.2492 24 6 1.5300 0.0001 -2.5000 25 6 2.0936 -0.6918 -3.7442 26 6 3.6224 -0.6888 -3.6751 27 7 4.0603 -1.3909 -2.4620 28 6 3.5704 -0.7173 -1.2525 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.0981 -1.6574 1.1994 33 1 1.6822 2.9262 2.7986 34 1 -0.3654 4.0060 3.6309 35 1 -2.2495 2.6477 4.4428 36 1 -2.0989 0.1964 4.4375 37 1 -1.3078 -3.8186 5.0550 38 1 0.4410 -0.0380 -2.5239 39 1 1.8587 1.0392 -2.4807 40 1 1.7331 -1.7197 -3.7836 41 1 1.7686 -0.1570 -4.6366 42 1 4.0266 -1.1934 -4.5526 43 1 3.9828 0.3396 -3.6494 44 1 5.0646 -1.4855 -2.4414 45 1 3.9310 0.3112 -1.2384 46 1 3.9367 -1.2427 -0.3705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601337537.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:53 Heat of formation + Delta-G solvation = -69.620877 kcal Electronic energy + Delta-G solvation = -28893.706271 eV Core-core repulsion = 25101.956280 eV Total energy + Delta-G solvation = -3791.749991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.11214 -37.91026 -36.30203 -35.67156 -34.87788 -33.86187 -32.11744 -30.81216 -30.46034 -30.15072 -28.53401 -25.41969 -24.12722 -23.07212 -22.08344 -21.23923 -20.92677 -19.82111 -18.59298 -17.75120 -17.10085 -16.84370 -16.11052 -15.53582 -15.37136 -14.74279 -14.41235 -14.21227 -14.18652 -13.89569 -13.79210 -13.51339 -13.37141 -13.04491 -12.87699 -12.75091 -12.47633 -12.22483 -11.95055 -11.59706 -11.37431 -11.26946 -11.18648 -11.13964 -11.04818 -10.99597 -10.92650 -10.79239 -10.57534 -10.40333 -10.29122 -10.13388 -9.95038 -9.64805 -9.30769 -8.78592 -8.48979 -8.24847 -7.85527 -7.21685 -4.87072 1.48863 2.06706 2.51011 2.95599 3.08238 3.18226 3.77934 3.87558 4.14122 4.26981 4.67930 4.77033 4.83695 4.92892 5.04852 5.09683 5.28628 5.40045 5.50548 5.54589 5.62387 5.67524 5.71091 5.79654 5.83838 5.85427 5.89586 5.92209 6.03062 6.05321 6.18585 6.22276 6.28129 6.37603 6.41033 6.62032 6.70476 6.79776 6.92209 6.98720 7.07461 7.23239 7.32178 7.37395 7.52837 7.63706 7.78731 8.03986 8.25727 8.48497 9.77722 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.004241 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.163193 B = 6600.317913 C = 6940.990366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.161 3.839 3 H 0.084 0.916 4 N -1.113 6.113 5 S 2.701 3.299 6 O -0.998 6.998 7 O -0.963 6.963 8 C -0.768 4.768 9 C 0.017 3.983 10 C -0.261 4.261 11 C -0.042 4.042 12 C -0.241 4.241 13 C 0.162 3.838 14 C -0.426 4.426 15 H 0.104 0.896 16 C 0.089 3.911 17 N -0.780 5.780 18 Si 0.917 3.083 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.241 1.241 22 C -0.085 4.085 23 H 0.085 0.915 24 C -0.118 4.118 25 C -0.116 4.116 26 C 0.056 3.944 27 N -0.691 5.691 28 C 0.060 3.940 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.414 0.586 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.292 0.708 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.341 0.659 45 H 0.034 0.966 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 3.758 -11.322 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.053 3.947 3 H 0.102 0.898 4 N -0.870 5.870 5 S 2.797 3.203 6 O -0.988 6.988 7 O -0.953 6.953 8 C -0.862 4.862 9 C -0.002 4.002 10 C -0.281 4.281 11 C -0.061 4.061 12 C -0.260 4.260 13 C 0.157 3.843 14 C -0.453 4.453 15 H 0.122 0.878 16 C -0.135 4.135 17 N -0.401 5.401 18 Si 0.743 3.257 19 H -0.193 1.193 20 H -0.214 1.214 21 H -0.164 1.164 22 C -0.106 4.106 23 H 0.103 0.897 24 C -0.156 4.156 25 C -0.154 4.154 26 C -0.073 4.073 27 N -0.322 5.322 28 C -0.069 4.069 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.248 0.752 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.158 0.842 45 H 0.052 0.948 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.389 3.239 -10.955 11.671 hybrid contribution -0.688 0.747 0.738 1.255 sum 1.701 3.986 -10.217 11.098 Atomic orbital electron populations 1.22375 0.94995 1.03170 1.02620 1.20635 0.94281 0.95856 0.83952 0.89785 1.55688 1.83943 1.19299 1.28073 1.01098 0.74120 0.72843 0.72229 1.93452 1.65206 1.57975 1.82199 1.93563 1.82448 1.61830 1.57464 1.29934 1.20734 1.03125 1.32408 1.20390 0.95924 0.92624 0.91295 1.20474 0.96258 0.97793 1.13614 1.20811 0.96658 0.93952 0.94662 1.21250 0.98892 0.94453 1.11441 1.17019 0.88712 0.92409 0.86157 1.19832 1.23308 0.89547 1.12604 0.87796 1.26181 0.92568 0.94804 0.99914 1.69617 1.29122 1.07343 1.34033 0.86286 0.79928 0.80221 0.79261 1.19332 1.21414 1.16447 1.21428 0.94698 1.00838 0.93621 0.89664 1.21682 1.00908 0.99139 0.93858 1.21575 0.94733 1.01502 0.97623 1.21925 0.96290 0.96222 0.92885 1.60263 1.16727 1.53235 1.01985 1.21983 0.95364 0.97080 0.92457 0.92309 0.91770 0.90784 0.75174 0.86986 0.88226 0.88375 0.87468 0.89707 0.90992 0.92074 0.91147 0.91803 0.91205 0.95406 0.84153 0.94768 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 9.17 37.16 0.34 -2.26 16 2 C 0.16 2.40 2.49 -67.93 -0.17 2.23 16 3 H 0.08 1.29 7.51 -51.93 -0.39 0.90 16 4 N -1.11 -19.22 3.77 -4.89 -0.02 -19.24 16 5 S 2.70 57.21 4.93 -107.50 -0.53 56.68 16 6 O -1.00 -21.67 16.33 -57.17 -0.93 -22.60 16 7 O -0.96 -23.74 16.70 -57.17 -0.95 -24.69 16 8 C -0.77 -17.18 4.95 -38.87 -0.19 -17.38 16 9 C 0.02 0.37 9.53 -39.66 -0.38 -0.01 16 10 C -0.26 -5.18 10.05 -39.29 -0.39 -5.57 16 11 C -0.04 -0.86 10.02 -39.66 -0.40 -1.25 16 12 C -0.24 -5.43 7.12 -38.87 -0.28 -5.71 16 13 C 0.16 3.85 4.68 -106.83 -0.50 3.35 16 14 C -0.43 -10.63 8.18 -37.74 -0.31 -10.94 16 15 H 0.10 2.58 5.93 -52.49 -0.31 2.27 16 16 C 0.09 2.19 5.46 -17.34 -0.09 2.10 16 17 N -0.78 -19.34 13.93 55.55 0.77 -18.57 16 18 Si 0.92 20.04 24.41 -169.99 -4.15 15.89 16 19 H -0.27 -5.49 6.51 56.52 0.37 -5.12 16 20 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.24 -5.52 6.84 56.52 0.39 -5.14 16 22 C -0.09 -1.09 2.05 -90.54 -0.19 -1.27 16 23 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 24 C -0.12 -1.28 4.86 -26.61 -0.13 -1.41 16 25 C -0.12 -1.13 6.09 -26.65 -0.16 -1.29 16 26 C 0.06 0.55 6.55 -3.84 -0.03 0.52 16 27 N -0.69 -7.73 6.84 -113.81 -0.78 -8.51 16 28 C 0.06 0.78 5.66 -3.83 -0.02 0.76 16 29 H 0.06 0.74 6.49 -51.93 -0.34 0.40 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.30 6.61 -51.93 -0.34 0.96 16 32 H 0.41 6.76 8.56 -34.47 -0.29 6.46 16 33 H 0.11 2.15 7.33 -52.48 -0.38 1.77 16 34 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 35 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.11 2.37 4.24 -52.49 -0.22 2.14 16 37 H 0.29 6.54 8.30 -40.82 -0.34 6.20 16 38 H 0.07 0.74 6.58 -51.93 -0.34 0.40 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.34 3.29 8.90 -39.29 -0.35 2.94 16 45 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 1.07 7.64 -51.93 -0.40 0.67 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -29.21 363.55 -10.79 -40.00 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -6.78 Total: 13.71 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: -2.90 Total: -38.13 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.02 Total: -46.32 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -1.89 Total: -47.29 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.15 Total: 15.89 kcal Atomic # 16 Polarization: 57.21 SS G_CDS: -0.53 Total: 56.68 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.21 -10.79 -40.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337537.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.623 kcal (2) G-P(sol) polarization free energy of solvation -29.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds