Wall clock time and date at job start Tue Mar 31 2020 20:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46949 * 2 1 4 4 N 1.46498 * 109.47015 * 120.00588 * 2 1 3 5 5 S 1.65602 * 119.99731 * 264.06133 * 4 2 1 6 6 O 1.42097 * 106.40333 * 311.08822 * 5 4 2 7 7 O 1.42101 * 106.40160 * 178.16180 * 5 4 2 8 8 C 1.76208 * 107.21712 * 64.62491 * 5 4 2 9 9 C 1.37636 * 120.12872 * 243.83233 * 8 5 4 10 10 C 1.38609 * 120.24982 * 179.97438 * 9 8 5 11 11 C 1.38655 * 120.50021 * 359.97438 * 10 9 8 12 12 C 1.37597 * 120.24777 * 0.02562 * 11 10 9 13 13 C 1.40699 * 120.12479 * 63.81067 * 8 5 4 14 14 C 1.41390 * 120.24719 * 359.97438 * 13 8 5 15 15 H 1.07998 * 120.00033 * 330.23393 * 14 13 8 16 16 C 1.39950 * 120.00215 * 150.22768 * 14 13 8 17 17 N 1.30821 * 119.99954 * 166.45179 * 16 14 13 18 18 Si 1.86801 * 119.99827 * 346.45589 * 16 14 13 19 19 H 1.48503 * 109.46938 * 90.06075 * 18 16 14 20 20 H 1.48491 * 109.47248 * 210.06430 * 18 16 14 21 21 H 1.48501 * 109.47116 * 330.06629 * 18 16 14 22 22 C 1.52998 * 109.46854 * 240.00397 * 2 1 3 23 23 H 1.09000 * 109.50702 * 299.92000 * 22 2 1 24 24 C 1.53117 * 109.50612 * 60.00177 * 22 2 1 25 25 C 1.53120 * 109.16296 * 177.59599 * 24 22 2 26 26 C 1.53040 * 109.27518 * 302.34391 * 25 24 22 27 27 N 1.46839 * 109.52544 * 59.17935 * 26 25 24 28 28 C 1.46851 * 111.20009 * 298.25805 * 27 26 25 29 29 H 1.09005 * 109.46913 * 59.99677 * 1 2 3 30 30 H 1.09000 * 109.47194 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47299 * 299.99946 * 1 2 3 32 32 H 0.96997 * 120.00509 * 84.06554 * 4 2 1 33 33 H 1.08007 * 119.87405 * 359.97438 * 9 8 5 34 34 H 1.08003 * 119.75030 * 180.02562 * 10 9 8 35 35 H 1.07999 * 119.87719 * 180.28058 * 11 10 9 36 36 H 1.08000 * 120.12521 * 179.97438 * 12 11 10 37 37 H 0.96998 * 119.99449 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.52324 * 297.49794 * 24 22 2 39 39 H 1.08999 * 109.52649 * 57.68782 * 24 22 2 40 40 H 1.08995 * 109.50324 * 62.28337 * 25 24 22 41 41 H 1.08999 * 109.50066 * 182.40404 * 25 24 22 42 42 H 1.08997 * 109.45915 * 179.19684 * 26 25 24 43 43 H 1.09005 * 109.46126 * 299.17213 * 26 25 24 44 44 H 1.00903 * 111.00456 * 174.16092 * 27 26 25 45 45 H 1.09003 * 109.46012 * 301.72868 * 28 27 26 46 46 H 1.09001 * 109.46534 * 181.75640 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4342 0.1789 2.5426 6 8 3.2835 1.2273 2.0967 7 8 2.8208 -0.7685 3.5286 8 6 0.9661 0.9483 3.1406 9 6 0.8618 2.3207 3.1546 10 6 -0.2921 2.9285 3.6239 11 6 -1.3534 2.1637 4.0835 12 6 -1.2712 0.7902 4.0787 13 6 -0.1043 0.1621 3.6051 14 6 -0.0089 -1.2485 3.5945 15 1 0.5951 -1.7433 2.8484 16 6 -0.6972 -2.0037 4.5509 17 7 -0.8305 -3.2953 4.3922 18 14 -1.4255 -1.1671 6.0539 19 1 -2.8156 -0.7378 5.7565 20 1 -1.4343 -2.1182 7.1942 21 1 -0.6055 0.0200 6.4058 22 6 2.0400 -0.7212 -1.2493 23 1 1.6781 -1.7493 -1.2492 24 6 1.5300 0.0001 -2.5000 25 6 2.0936 -0.6918 -3.7442 26 6 3.6224 -0.6888 -3.6751 27 7 4.0603 -1.3909 -2.4620 28 6 3.5704 -0.7173 -1.2525 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.0981 -1.6574 1.1994 33 1 1.6822 2.9262 2.7986 34 1 -0.3654 4.0060 3.6309 35 1 -2.2495 2.6477 4.4428 36 1 -2.0989 0.1964 4.4375 37 1 -1.3078 -3.8186 5.0550 38 1 0.4410 -0.0380 -2.5239 39 1 1.8587 1.0392 -2.4807 40 1 1.7331 -1.7197 -3.7836 41 1 1.7686 -0.1570 -4.6366 42 1 4.0266 -1.1934 -4.5526 43 1 3.9828 0.3396 -3.6494 44 1 5.0646 -1.4855 -2.4414 45 1 3.9310 0.3112 -1.2384 46 1 3.9367 -1.2427 -0.3705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601337537.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:52 Heat of formation + Delta-G solvation = -90.946296 kcal Electronic energy + Delta-G solvation = -28894.631011 eV Core-core repulsion = 25101.956280 eV Total energy + Delta-G solvation = -3792.674731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.13042 -39.59703 -38.05605 -36.86639 -36.68937 -35.62712 -33.11322 -32.48701 -31.82572 -31.57373 -29.72779 -27.17638 -25.09954 -24.07292 -23.73924 -22.94187 -22.06386 -20.90959 -20.09879 -19.53451 -18.67302 -18.23277 -17.46717 -17.11389 -16.89087 -16.06060 -15.86173 -15.58635 -15.50587 -15.21830 -15.15227 -14.86488 -14.58491 -14.44520 -14.16645 -14.04711 -13.88492 -13.58788 -13.33472 -13.06139 -13.01799 -12.94734 -12.88448 -12.67927 -12.58080 -12.48070 -12.27169 -12.12870 -11.87784 -11.69549 -11.56281 -11.39589 -11.25011 -11.15759 -10.99143 -10.22536 -9.92220 -9.57920 -9.37914 -9.01331 -6.69540 -0.18461 0.35889 0.79029 1.21013 1.36130 1.43558 2.03628 2.29887 2.53829 2.95903 3.23958 3.33054 3.75193 3.83757 3.91539 3.93803 4.17638 4.22935 4.29357 4.32692 4.40092 4.49690 4.53110 4.63274 4.64960 4.70389 4.72741 4.83785 4.89570 4.93682 5.01344 5.02842 5.04933 5.17247 5.20475 5.28984 5.39440 5.42218 5.51809 5.56500 5.59182 5.67273 5.84654 6.03584 6.08856 6.19460 6.27571 6.50513 6.50806 6.69695 8.03514 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.004241 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.163193 B = 6600.317913 C = 6940.990366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.159 3.841 3 H 0.083 0.917 4 N -1.104 6.104 5 S 2.713 3.287 6 O -1.005 7.005 7 O -1.003 7.003 8 C -0.776 4.776 9 C 0.003 3.997 10 C -0.248 4.248 11 C -0.039 4.039 12 C -0.264 4.264 13 C 0.154 3.846 14 C -0.460 4.460 15 H 0.090 0.910 16 C 0.054 3.946 17 N -0.817 5.817 18 Si 0.955 3.045 19 H -0.245 1.245 20 H -0.278 1.278 21 H -0.259 1.259 22 C -0.078 4.078 23 H 0.079 0.921 24 C -0.117 4.117 25 C -0.114 4.114 26 C 0.053 3.947 27 N -0.696 5.696 28 C 0.061 3.939 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.417 0.583 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.109 0.891 37 H 0.299 0.701 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.030 0.970 44 H 0.349 0.651 45 H 0.028 0.972 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.184 6.003 -12.586 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.051 3.949 3 H 0.101 0.899 4 N -0.863 5.863 5 S 2.810 3.190 6 O -0.995 6.995 7 O -0.994 6.994 8 C -0.870 4.870 9 C -0.017 4.017 10 C -0.268 4.268 11 C -0.057 4.057 12 C -0.283 4.283 13 C 0.149 3.851 14 C -0.488 4.488 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.440 5.440 18 Si 0.779 3.221 19 H -0.170 1.170 20 H -0.205 1.205 21 H -0.183 1.183 22 C -0.099 4.099 23 H 0.097 0.903 24 C -0.155 4.155 25 C -0.152 4.152 26 C -0.076 4.076 27 N -0.328 5.328 28 C -0.069 4.069 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.253 0.747 33 H 0.146 0.854 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.048 0.952 44 H 0.167 0.833 45 H 0.046 0.954 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.482 5.484 -12.228 13.483 hybrid contribution -0.337 0.240 1.017 1.098 sum 1.144 5.724 -11.210 12.639 Atomic orbital electron populations 1.22315 0.94866 1.02694 1.02698 1.20845 0.94338 0.95865 0.83815 0.89884 1.55396 1.83869 1.19328 1.27732 1.00524 0.73876 0.72379 0.72237 1.93431 1.65516 1.58250 1.82297 1.93506 1.83266 1.62964 1.59643 1.30109 1.20544 1.04108 1.32272 1.20728 0.97238 0.92131 0.91592 1.20974 0.95130 0.99782 1.10870 1.21268 0.98147 0.93105 0.93218 1.21431 0.98626 0.95832 1.12432 1.17169 0.89540 0.92135 0.86277 1.19894 1.24790 0.90464 1.13655 0.89237 1.26759 0.92904 0.95248 1.01563 1.69633 1.31012 1.08096 1.35296 0.85707 0.80209 0.78928 0.77262 1.16958 1.20515 1.18308 1.21353 0.94674 1.00441 0.93421 0.90298 1.21701 1.01428 0.99149 0.93193 1.21582 0.94560 1.01297 0.97750 1.22032 0.96477 0.96442 0.92633 1.60259 1.17478 1.53217 1.01865 1.21899 0.95414 0.96630 0.92961 0.89411 0.92556 0.93366 0.74736 0.85387 0.84482 0.84580 0.87309 0.88992 0.90192 0.91678 0.91727 0.89672 0.89518 0.95164 0.83252 0.95417 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.96 9.17 71.98 0.66 -4.30 16 2 C 0.16 4.71 2.49 44.99 0.11 4.82 16 3 H 0.08 2.50 7.51 -2.39 -0.02 2.48 16 4 N -1.10 -39.30 3.77 -169.39 -0.64 -39.94 16 5 S 2.71 117.43 4.93 -56.49 -0.28 117.15 16 6 O -1.00 -43.64 16.33 -128.00 -2.09 -45.73 16 7 O -1.00 -51.52 16.70 -128.00 -2.14 -53.65 16 8 C -0.78 -34.68 4.95 22.73 0.11 -34.57 16 9 C 0.00 0.11 9.53 22.22 0.21 0.32 16 10 C -0.25 -8.92 10.05 22.46 0.23 -8.69 16 11 C -0.04 -1.46 10.02 22.22 0.22 -1.23 16 12 C -0.26 -11.57 7.12 22.73 0.16 -11.40 16 13 C 0.15 7.35 4.68 -21.29 -0.10 7.25 16 14 C -0.46 -23.78 8.18 23.46 0.19 -23.59 16 15 H 0.09 4.70 5.93 -2.91 -0.02 4.68 16 16 C 0.05 2.77 5.46 85.26 0.47 3.23 16 17 N -0.82 -41.97 13.93 21.83 0.30 -41.67 16 18 Si 0.95 41.09 24.41 68.60 1.67 42.77 16 19 H -0.24 -9.50 6.51 99.48 0.65 -8.86 16 20 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 21 H -0.26 -11.74 6.84 99.48 0.68 -11.06 16 22 C -0.08 -1.95 2.05 -10.74 -0.02 -1.97 16 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 24 C -0.12 -2.30 4.86 30.67 0.15 -2.15 16 25 C -0.11 -1.94 6.09 30.65 0.19 -1.75 16 26 C 0.05 0.92 6.55 86.33 0.57 1.49 16 27 N -0.70 -14.81 6.84 -513.99 -3.52 -18.33 16 28 C 0.06 1.54 5.66 86.33 0.49 2.03 16 29 H 0.09 2.05 6.49 -2.38 -0.02 2.03 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.69 6.61 -2.39 -0.02 1.67 16 32 H 0.42 14.41 8.56 -96.75 -0.83 13.59 16 33 H 0.13 4.64 7.33 -2.91 -0.02 4.62 16 34 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 36 H 0.11 4.67 4.24 -2.91 -0.01 4.66 16 37 H 0.30 13.81 8.30 -92.71 -0.77 13.05 16 38 H 0.08 1.45 6.58 -2.39 -0.02 1.43 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 43 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 44 H 0.35 6.38 8.90 -89.69 -0.80 5.59 16 45 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 1.78 7.64 -2.39 -0.02 1.77 16 Total: -1.00 -63.59 363.55 -3.75 -67.34 By element: Atomic # 1 Polarization: 43.27 SS G_CDS: -0.70 Total: 42.58 kcal Atomic # 6 Polarization: -74.15 SS G_CDS: 3.63 Total: -70.52 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -3.85 Total: -99.94 kcal Atomic # 8 Polarization: -95.16 SS G_CDS: -4.23 Total: -99.39 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.67 Total: 42.77 kcal Atomic # 16 Polarization: 117.43 SS G_CDS: -0.28 Total: 117.15 kcal Total: -63.59 -3.75 -67.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337537.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.606 kcal (2) G-P(sol) polarization free energy of solvation -63.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds