Wall clock time and date at job start Tue Mar 31 2020 20:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47212 * 2 1 4 4 N 1.46501 * 109.47389 * 120.00567 * 2 1 3 5 5 S 1.65607 * 119.99902 * 262.87596 * 4 2 1 6 6 O 1.42101 * 106.39759 * 311.97863 * 5 4 2 7 7 O 1.42092 * 106.40482 * 179.05755 * 5 4 2 8 8 C 1.76202 * 107.21674 * 65.51598 * 5 4 2 9 9 C 1.37641 * 120.12849 * 244.10378 * 8 5 4 10 10 C 1.38615 * 120.24494 * 179.97438 * 9 8 5 11 11 C 1.38660 * 120.50381 * 0.02562 * 10 9 8 12 12 C 1.37591 * 120.24620 * 359.97438 * 11 10 9 13 13 C 1.40697 * 120.12541 * 64.35942 * 8 5 4 14 14 C 1.41400 * 120.24704 * 0.02562 * 13 8 5 15 15 H 1.07996 * 119.99776 * 330.56210 * 14 13 8 16 16 C 1.39945 * 119.99872 * 150.55411 * 14 13 8 17 17 N 1.30824 * 119.99848 * 344.48760 * 16 14 13 18 18 Si 1.86798 * 119.99974 * 164.48503 * 16 14 13 19 19 H 1.48510 * 109.46717 * 89.99963 * 18 16 14 20 20 H 1.48494 * 109.47313 * 210.00087 * 18 16 14 21 21 H 1.48497 * 109.47003 * 330.00440 * 18 16 14 22 22 C 1.52999 * 109.47108 * 240.00257 * 2 1 3 23 23 H 1.09000 * 109.50979 * 185.07756 * 22 2 1 24 24 C 1.53124 * 109.50202 * 64.99674 * 22 2 1 25 25 C 1.53117 * 109.16086 * 182.40359 * 24 22 2 26 26 C 1.53037 * 109.27932 * 57.65551 * 25 24 22 27 27 N 1.46846 * 109.52464 * 300.82409 * 26 25 24 28 28 C 1.46847 * 111.20018 * 61.73874 * 27 26 25 29 29 H 1.08996 * 109.46628 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46870 * 299.99352 * 1 2 3 31 31 H 1.08993 * 109.46910 * 59.99823 * 1 2 3 32 32 H 0.96996 * 120.00332 * 82.87415 * 4 2 1 33 33 H 1.07998 * 119.87290 * 359.97438 * 9 8 5 34 34 H 1.07997 * 119.74738 * 180.02562 * 10 9 8 35 35 H 1.08003 * 119.87344 * 180.02562 * 11 10 9 36 36 H 1.07999 * 120.12447 * 179.97438 * 12 11 10 37 37 H 0.97006 * 119.99340 * 180.02562 * 17 16 14 38 38 H 1.08991 * 109.52387 * 302.30961 * 24 22 2 39 39 H 1.09003 * 109.51820 * 62.50764 * 24 22 2 40 40 H 1.08996 * 109.50540 * 177.59653 * 25 24 22 41 41 H 1.08999 * 109.50642 * 297.68028 * 25 24 22 42 42 H 1.09006 * 109.46223 * 60.83392 * 26 25 24 43 43 H 1.09000 * 109.46710 * 180.81102 * 26 25 24 44 44 H 1.00906 * 110.99756 * 297.63899 * 27 26 25 45 45 H 1.08999 * 109.46248 * 178.24637 * 28 27 26 46 46 H 1.08997 * 109.46226 * 58.27575 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 16 2.4622 0.1810 2.5324 6 8 3.3077 1.2244 2.0682 7 8 2.8625 -0.7652 3.5140 8 6 1.0083 0.9583 3.1545 9 6 0.9079 2.3310 3.1613 10 6 -0.2349 2.9450 3.6496 11 6 -1.2883 2.1861 4.1365 12 6 -1.2097 0.8125 4.1394 13 6 -0.0521 0.1783 3.6510 14 6 0.0423 -1.2326 3.6546 15 1 0.6340 -1.7360 2.9044 16 6 -0.6310 -1.9765 4.6302 17 7 -1.0901 -1.3847 5.7028 18 14 -0.8742 -3.8143 4.4008 19 1 0.2759 -4.5435 4.9935 20 1 -2.1282 -4.2357 5.0753 21 1 -0.9632 -4.1247 2.9514 22 6 2.0400 -0.7212 -1.2493 23 1 3.1262 -0.8010 -1.2056 24 6 1.6352 0.0691 -2.4968 25 6 2.0968 -0.6897 -3.7441 26 6 1.4817 -2.0909 -3.7396 27 7 1.8991 -2.8064 -2.5271 28 6 1.4264 -2.1215 -1.3172 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 2.0819 -1.6586 1.2053 33 1 1.7225 2.9318 2.7848 34 1 -0.3053 4.0227 3.6507 35 1 -2.1741 2.6752 4.5142 36 1 -2.0311 0.2233 4.5195 37 1 -1.5565 -1.9005 6.3792 38 1 0.5515 0.1830 -2.5201 39 1 2.1056 1.0521 -2.4737 40 1 1.7742 -0.1534 -4.6365 41 1 3.1839 -0.7690 -3.7403 42 1 0.3947 -2.0105 -3.7577 43 1 1.8198 -2.6389 -4.6191 44 1 2.9006 -2.9281 -2.5058 45 1 1.7244 -2.6916 -0.4372 46 1 0.3398 -2.0409 -1.3466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601337538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:56 Heat of formation + Delta-G solvation = -73.685520 kcal Electronic energy + Delta-G solvation = -28941.241960 eV Core-core repulsion = 25149.315712 eV Total energy + Delta-G solvation = -3791.926248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.48111 -37.61597 -36.26767 -35.68381 -34.82905 -33.88479 -31.89186 -30.75841 -30.21801 -29.59025 -28.25059 -25.53192 -24.04681 -23.77753 -21.66231 -21.39545 -21.12845 -19.51244 -18.66103 -17.70402 -16.92749 -16.35498 -15.85210 -15.49263 -15.34802 -15.08778 -14.82317 -14.42632 -14.25017 -14.00917 -13.31561 -13.21524 -13.05086 -13.00297 -12.75282 -12.60505 -12.19435 -12.06127 -11.75656 -11.54156 -11.36423 -11.28394 -11.24267 -11.20326 -11.07865 -11.06320 -10.98643 -10.78251 -10.75520 -10.60104 -10.54775 -10.21394 -9.89416 -9.47663 -9.40820 -8.78659 -8.39624 -8.02723 -7.61786 -7.06261 -4.75446 1.54404 2.33826 2.72244 2.96914 3.00031 3.11167 3.76994 3.91390 4.20027 4.39246 4.63778 4.73531 4.75824 4.86289 4.94315 5.18948 5.25916 5.32423 5.41911 5.47876 5.54347 5.59853 5.64221 5.76576 5.82636 5.85651 5.98806 6.01902 6.03883 6.06906 6.20355 6.22663 6.28372 6.39068 6.57757 6.73968 6.78294 6.91745 6.93351 7.07073 7.28397 7.29712 7.47726 7.54237 7.66037 7.79257 7.88521 8.26906 8.49593 8.63454 9.89024 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.004992 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.940181 B = 5607.704661 C = 6711.953026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.164 3.836 3 H 0.087 0.913 4 N -1.117 6.117 5 S 2.699 3.301 6 O -1.000 7.000 7 O -0.965 6.965 8 C -0.773 4.773 9 C -0.002 4.002 10 C -0.251 4.251 11 C -0.075 4.075 12 C -0.159 4.159 13 C 0.192 3.808 14 C -0.447 4.447 15 H 0.088 0.912 16 C 0.083 3.917 17 N -0.773 5.773 18 Si 0.910 3.090 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.255 1.255 22 C -0.127 4.127 23 H 0.075 0.925 24 C -0.117 4.117 25 C -0.156 4.156 26 C 0.056 3.944 27 N -0.686 5.686 28 C 0.056 3.944 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.409 0.591 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.288 0.712 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.338 0.662 45 H 0.077 0.923 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -1.304 -13.703 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.056 3.944 3 H 0.105 0.895 4 N -0.873 5.873 5 S 2.797 3.203 6 O -0.991 6.991 7 O -0.956 6.956 8 C -0.868 4.868 9 C -0.022 4.022 10 C -0.271 4.271 11 C -0.094 4.094 12 C -0.179 4.179 13 C 0.188 3.812 14 C -0.476 4.476 15 H 0.105 0.895 16 C -0.139 4.139 17 N -0.396 5.396 18 Si 0.733 3.267 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.178 1.178 22 C -0.149 4.149 23 H 0.093 0.907 24 C -0.155 4.155 25 C -0.196 4.196 26 C -0.074 4.074 27 N -0.314 5.314 28 C -0.073 4.073 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.243 0.757 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.155 0.845 45 H 0.095 0.905 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.915 -1.583 -13.166 13.292 hybrid contribution -0.334 -0.047 0.247 0.418 sum 0.581 -1.630 -12.918 13.034 Atomic orbital electron populations 1.22444 0.95215 1.03044 1.02791 1.20547 0.94261 0.95947 0.83682 0.89505 1.55792 1.83927 1.18802 1.28769 1.01103 0.74296 0.72845 0.72097 1.93443 1.65681 1.58188 1.81747 1.93544 1.82261 1.62139 1.57641 1.29843 1.20914 1.03252 1.32820 1.20242 0.95935 0.92582 0.93402 1.20463 0.96768 0.97492 1.12422 1.20871 0.96845 0.94625 0.97047 1.21377 0.98766 0.93079 1.04633 1.16929 0.88090 0.92017 0.84187 1.19801 1.25213 0.91139 1.11402 0.89456 1.25924 0.92357 1.01988 0.93609 1.69800 1.25202 1.39261 1.05291 0.86254 0.78892 0.81128 0.80437 1.18716 1.19820 1.17808 1.22128 1.00954 0.97259 0.94529 0.90682 1.21661 1.01816 0.98687 0.93321 1.22256 1.00822 0.98061 0.98443 1.22024 1.00614 0.91849 0.92911 1.60702 1.18588 1.50043 1.02043 1.22219 1.00934 0.91645 0.92522 0.91645 0.90628 0.92346 0.75686 0.87572 0.88827 0.88917 0.86435 0.90130 0.91071 0.91628 0.91575 0.92128 0.90946 0.91111 0.84457 0.90464 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.78 37.16 0.33 -2.20 16 2 C 0.16 2.36 2.70 -67.93 -0.18 2.18 16 3 H 0.09 1.33 7.48 -51.93 -0.39 0.94 16 4 N -1.12 -18.73 4.53 -4.89 -0.02 -18.75 16 5 S 2.70 58.04 4.94 -107.50 -0.53 57.51 16 6 O -1.00 -22.53 16.29 -57.17 -0.93 -23.46 16 7 O -0.97 -23.91 16.64 -57.17 -0.95 -24.86 16 8 C -0.77 -17.93 5.07 -38.87 -0.20 -18.13 16 9 C 0.00 -0.04 9.54 -39.66 -0.38 -0.42 16 10 C -0.25 -5.38 10.05 -39.29 -0.39 -5.77 16 11 C -0.07 -1.64 10.02 -39.66 -0.40 -2.04 16 12 C -0.16 -3.81 8.66 -38.87 -0.34 -4.15 16 13 C 0.19 4.72 5.18 -106.82 -0.55 4.17 16 14 C -0.45 -10.84 7.61 -37.74 -0.29 -11.13 16 15 H 0.09 1.97 5.76 -52.49 -0.30 1.66 16 16 C 0.08 1.96 5.15 -17.34 -0.09 1.87 16 17 N -0.77 -18.82 11.18 55.55 0.62 -18.20 16 18 Si 0.91 17.67 29.59 -169.99 -5.03 12.64 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 21 H -0.25 -4.74 7.11 56.52 0.40 -4.34 16 22 C -0.13 -1.47 2.31 -90.53 -0.21 -1.68 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 C -0.12 -1.17 5.09 -26.61 -0.14 -1.31 16 25 C -0.16 -1.34 6.08 -26.65 -0.16 -1.50 16 26 C 0.06 0.50 6.55 -3.83 -0.03 0.47 16 27 N -0.69 -7.04 6.87 -113.81 -0.78 -7.82 16 28 C 0.06 0.64 5.23 -3.83 -0.02 0.62 16 29 H 0.06 0.90 6.32 -51.93 -0.33 0.58 16 30 H 0.07 1.30 6.88 -51.93 -0.36 0.94 16 31 H 0.06 0.70 6.52 -51.93 -0.34 0.37 16 32 H 0.41 6.20 7.06 -34.47 -0.24 5.96 16 33 H 0.11 2.20 7.33 -52.49 -0.38 1.82 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 36 H 0.12 2.85 6.48 -52.49 -0.34 2.51 16 37 H 0.29 6.32 8.30 -40.82 -0.34 5.98 16 38 H 0.07 0.70 6.47 -51.93 -0.34 0.37 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.34 3.15 8.86 -39.29 -0.35 2.80 16 45 H 0.08 0.91 6.78 -51.93 -0.35 0.56 16 46 H 0.08 0.98 6.29 -51.93 -0.33 0.65 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -29.50 364.86 -11.73 -41.23 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -6.56 Total: 15.23 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: -3.04 Total: -39.02 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.18 Total: -44.77 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -1.88 Total: -48.33 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 16 Polarization: 58.04 SS G_CDS: -0.53 Total: 57.51 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.50 -11.73 -41.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.451 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds